Wall clock time and date at job start Mon Mar 8 2021 15:02:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34228 * 117.00017 * 2 1 4 4 O 1.20827 * 119.99981 * 0.02562 * 3 2 1 5 5 C 1.50704 * 120.00085 * 180.02562 * 3 2 1 6 6 H 1.09004 * 112.84808 * 311.19479 * 5 3 2 7 7 C 1.53959 * 113.66728 * 82.43993 * 5 3 2 8 8 C 1.53781 * 87.01754 * 139.93069 * 7 5 3 9 9 H 1.09002 * 113.61354 * 89.22883 * 8 7 5 10 10 S 1.81395 * 113.61502 * 220.04659 * 8 7 5 11 11 O 1.42109 * 110.54223 * 172.51583 * 10 8 7 12 12 O 1.42095 * 110.54332 * 35.76522 * 10 8 7 13 13 O 1.52201 * 104.44999 * 284.13831 * 10 8 7 14 14 C 1.35897 * 113.99763 * 75.00336 * 13 10 8 15 15 C 1.38666 * 120.04789 * 89.99951 * 14 13 10 16 16 C 1.38383 * 119.91973 * 180.02562 * 15 14 13 17 17 F 1.35100 * 119.99133 * 180.02562 * 16 15 14 18 18 C 1.38468 * 120.01244 * 0.02562 * 16 15 14 19 19 C 1.38258 * 120.07859 * 359.95716 * 18 16 15 20 20 C 1.50693 * 119.95648 * 180.02562 * 19 18 16 21 21 O 1.42907 * 109.47661 * 119.99891 * 20 19 18 22 22 Si 1.86298 * 109.47618 * 359.97438 * 20 19 18 23 23 C 1.38130 * 120.07993 * 0.27310 * 19 18 16 24 24 C 1.53783 * 87.17758 * 334.63928 * 8 7 5 25 25 H 1.09005 * 109.46474 * 299.99328 * 1 2 3 26 26 H 1.08989 * 109.47209 * 59.99332 * 1 2 3 27 27 H 1.08997 * 109.46877 * 180.02562 * 1 2 3 28 28 H 1.08999 * 113.60841 * 25.41635 * 7 5 3 29 29 H 1.08994 * 113.66522 * 254.45660 * 7 5 3 30 30 H 1.08004 * 120.03372 * 359.97438 * 15 14 13 31 31 H 1.07996 * 119.96301 * 179.97438 * 18 16 15 32 32 H 1.09000 * 109.46936 * 239.99514 * 20 19 18 33 33 H 0.96697 * 114.00527 * 179.97438 * 21 20 19 34 34 H 1.48506 * 109.99834 * 298.68714 * 22 20 19 35 35 H 1.48502 * 110.00011 * 59.99978 * 22 20 19 36 36 H 1.08004 * 120.00165 * 179.72759 * 23 19 18 37 37 H 1.09000 * 113.61503 * 139.93198 * 24 8 7 38 38 H 1.08997 * 113.61111 * 270.84024 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5664 1.2749 -0.0006 6 1 4.0240 0.6362 0.7550 7 6 4.1927 1.1222 -1.3987 8 6 5.1807 2.2271 -0.9886 9 1 6.0812 1.8497 -0.5042 10 16 5.5381 3.4113 -2.3153 11 8 6.3154 4.4937 -1.8216 12 8 4.3785 3.6419 -3.1037 13 8 6.4827 2.6649 -3.2465 14 6 5.8729 1.7237 -4.0141 15 6 5.3686 2.0642 -5.2601 16 6 4.7477 1.1038 -6.0393 17 9 4.2563 1.4338 -7.2538 18 6 4.6299 -0.1952 -5.5745 19 6 5.1329 -0.5349 -4.3323 20 6 5.0037 -1.9496 -3.8294 21 8 6.3045 -2.4907 -3.5897 22 14 4.1255 -2.9846 -5.1053 23 6 5.7491 0.4219 -3.5496 24 6 4.1078 2.7143 -0.0005 25 1 -0.3632 0.5138 0.8901 26 1 -0.3633 0.5139 -0.8898 27 1 -0.3633 -1.0276 0.0005 28 1 3.5253 1.4126 -2.2101 29 1 4.6646 0.1536 -1.5633 30 1 5.4597 3.0778 -5.6216 31 1 4.1448 -0.9439 -6.1831 32 1 4.4316 -1.9545 -2.9016 33 1 6.2978 -3.4008 -3.2631 34 1 2.7596 -2.4509 -5.3397 35 1 4.8950 -2.9861 -6.3754 36 1 6.1377 0.1561 -2.5775 37 1 4.5112 3.0289 0.9620 38 1 3.4172 3.4406 -0.4290 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_8925532_13206342.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 15:02:54 Heat of formation + Delta-G solvation = -190.823682 kcal Electronic energy + Delta-G solvation = -30021.051023 eV Core-core repulsion = 25453.828368 eV Total energy + Delta-G solvation = -4567.222655 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 347.070 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -50.33796 -42.54534 -41.90551 -39.91560 -39.52870 -38.55908 -37.49543 -37.44580 -37.36281 -32.99434 -31.81693 -29.88966 -27.82166 -27.31019 -27.09456 -25.12527 -23.45980 -23.36857 -21.59694 -20.79509 -19.92628 -19.37526 -19.01447 -18.68190 -18.34588 -18.21109 -18.04696 -17.69868 -17.31639 -17.00506 -16.94629 -16.80783 -16.02243 -15.61897 -15.46945 -15.35634 -14.78070 -14.59418 -14.44938 -14.34028 -14.05561 -13.91462 -13.81520 -13.66958 -13.59076 -13.42651 -13.35515 -13.24180 -13.09713 -13.00349 -12.74776 -12.45658 -12.02513 -11.87175 -11.83376 -11.61481 -11.36077 -10.58547 -10.25978 -10.09197 -4.93626 -1.35070 -0.45045 -0.39909 0.71017 1.03387 1.28206 1.66374 1.68439 1.84474 1.99948 2.23719 2.48515 2.67742 2.88142 2.99207 3.11460 3.17116 3.30436 3.37240 3.58201 3.62982 3.64805 3.89219 3.91404 4.18189 4.27754 4.29383 4.30421 4.31896 4.38947 4.44347 4.50692 4.54297 4.54862 4.65454 4.70115 4.72484 4.81326 4.95706 5.29264 5.32584 6.62407 6.97479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.352 6.352 3 C 0.461 3.539 4 O -0.542 6.542 5 C -0.082 4.082 6 H 0.183 0.817 7 C -0.112 4.112 8 C -0.613 4.613 9 H 0.218 0.782 10 S 2.585 3.415 11 O -0.962 6.962 12 O -0.975 6.975 13 O -0.659 6.659 14 C 0.087 3.913 15 C -0.145 4.145 16 C 0.114 3.886 17 F -0.134 7.134 18 C -0.150 4.150 19 C -0.032 4.032 20 C -0.068 4.068 21 O -0.555 6.555 22 Si 0.756 3.244 23 C -0.098 4.098 24 C -0.105 4.105 25 H 0.059 0.941 26 H 0.055 0.945 27 H 0.134 0.866 28 H 0.092 0.908 29 H 0.151 0.849 30 H 0.151 0.849 31 H 0.143 0.857 32 H 0.133 0.867 33 H 0.411 0.589 34 H -0.286 1.286 35 H -0.302 1.302 36 H 0.199 0.801 37 H 0.130 0.870 38 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.048 -13.033 6.077 14.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.268 6.268 3 C 0.306 3.694 4 O -0.432 6.432 5 C -0.102 4.102 6 H 0.200 0.800 7 C -0.150 4.150 8 C -0.725 4.725 9 H 0.235 0.765 10 S 2.686 3.314 11 O -0.961 6.961 12 O -0.973 6.973 13 O -0.618 6.618 14 C 0.045 3.955 15 C -0.166 4.166 16 C 0.094 3.906 17 F -0.113 7.113 18 C -0.169 4.169 19 C -0.032 4.032 20 C -0.179 4.179 21 O -0.366 6.366 22 Si 0.663 3.337 23 C -0.118 4.118 24 C -0.144 4.144 25 H 0.078 0.922 26 H 0.074 0.926 27 H 0.152 0.848 28 H 0.111 0.889 29 H 0.169 0.831 30 H 0.169 0.831 31 H 0.161 0.839 32 H 0.151 0.849 33 H 0.264 0.736 34 H -0.213 1.213 35 H -0.230 1.230 36 H 0.216 0.784 37 H 0.148 0.852 38 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -0.266 -11.472 4.635 12.376 hybrid contribution -0.419 1.246 -0.309 1.350 sum -0.685 -10.226 4.326 11.125 Atomic orbital electron populations 1.23545 0.75205 1.05826 1.02194 1.86494 1.24476 1.32474 1.83350 1.24200 0.92862 0.81237 0.71148 1.90713 1.68055 1.37825 1.46567 1.22649 0.85560 0.99927 1.02020 0.80020 1.23290 0.95430 1.00183 0.96127 1.32103 1.10149 1.14040 1.16161 0.76520 1.05705 0.72729 0.76280 0.76658 1.93613 1.69544 1.51555 1.81345 1.93640 1.52779 1.85008 1.65914 1.85716 1.57934 1.57583 1.60544 1.17780 0.98906 0.87624 0.91163 1.21391 0.99167 1.01591 0.94418 1.17218 0.98236 0.93267 0.81864 1.91553 1.85446 1.93170 1.41121 1.21317 1.03005 0.94988 0.97621 1.19357 0.95869 0.96228 0.91757 1.24604 0.91907 0.91599 1.09786 1.86442 1.24765 1.35886 1.89520 0.94297 0.75384 0.87203 0.76776 1.21709 0.97859 0.88537 1.03646 1.22812 0.93967 0.96567 1.01020 0.92197 0.92597 0.84780 0.88913 0.83148 0.83110 0.83934 0.84916 0.73594 1.21301 1.22957 0.78435 0.85188 0.89687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.10 10.56 113.37 1.20 1.09 16 2 O -0.35 0.82 10.57 -51.40 -0.54 0.28 16 3 C 0.46 0.06 7.49 71.24 0.53 0.60 16 4 O -0.54 -4.78 15.65 21.96 0.34 -4.44 16 5 C -0.08 0.70 4.26 -10.95 -0.05 0.65 16 6 H 0.18 -3.04 8.14 -2.38 -0.02 -3.06 16 7 C -0.11 1.06 4.72 31.18 0.15 1.21 16 8 C -0.61 4.86 4.01 31.12 0.12 4.99 16 9 H 0.22 -3.73 8.14 -2.39 -0.02 -3.75 16 10 S 2.59 10.62 5.15 -56.49 -0.29 10.33 16 11 O -0.96 -11.65 18.09 -118.57 -2.15 -13.79 16 12 O -0.97 -9.87 15.62 -118.57 -1.85 -11.73 16 13 O -0.66 -2.25 10.05 -61.48 -0.62 -2.87 16 14 C 0.09 0.21 4.63 22.50 0.10 0.31 16 15 C -0.14 -0.86 9.03 22.41 0.20 -0.66 16 16 C 0.11 0.64 7.30 22.36 0.16 0.80 16 17 F -0.13 -1.13 17.27 44.97 0.78 -0.35 16 18 C -0.15 -0.24 8.65 22.33 0.19 -0.04 16 19 C -0.03 0.12 5.42 -19.89 -0.11 0.01 16 20 C -0.07 0.74 2.81 71.23 0.20 0.94 16 21 O -0.56 6.22 12.75 -148.98 -1.90 4.32 16 22 Si 0.76 -6.14 29.79 68.60 2.04 -4.10 16 23 C -0.10 0.44 6.21 22.37 0.14 0.58 16 24 C -0.10 0.56 7.00 31.12 0.22 0.77 16 25 H 0.06 -0.17 8.13 -2.38 -0.02 -0.19 16 26 H 0.06 -0.11 8.13 -2.39 -0.02 -0.13 16 27 H 0.13 -1.38 8.14 -2.39 -0.02 -1.40 16 28 H 0.09 -0.46 7.52 -2.39 -0.02 -0.47 16 29 H 0.15 -2.66 5.85 -2.39 -0.01 -2.68 16 30 H 0.15 0.92 8.06 -2.91 -0.02 0.89 16 31 H 0.14 0.10 4.87 -2.91 -0.01 0.09 16 32 H 0.13 -2.50 7.96 -2.39 -0.02 -2.52 16 33 H 0.41 -8.69 8.74 -74.06 -0.65 -9.34 16 34 H -0.29 0.59 7.11 99.48 0.71 1.29 16 35 H -0.30 -0.34 7.11 99.48 0.71 0.37 16 36 H 0.20 -2.64 6.41 -2.91 -0.02 -2.66 16 37 H 0.13 -1.28 8.14 -2.39 -0.02 -1.30 16 38 H 0.08 0.05 7.39 -2.39 -0.02 0.03 16 Total: 0.00 -35.32 336.87 -0.59 -35.91 By element: Atomic # 1 Polarization: -25.35 SS G_CDS: 0.53 Total: -24.82 kcal Atomic # 6 Polarization: 8.19 SS G_CDS: 3.07 Total: 11.26 kcal Atomic # 8 Polarization: -21.52 SS G_CDS: -6.71 Total: -28.23 kcal Atomic # 9 Polarization: -1.13 SS G_CDS: 0.78 Total: -0.35 kcal Atomic # 14 Polarization: -6.14 SS G_CDS: 2.04 Total: -4.10 kcal Atomic # 16 Polarization: 10.62 SS G_CDS: -0.29 Total: 10.33 kcal Total: -35.32 -0.59 -35.91 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_8925532_13206342.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -154.909 kcal (2) G-P(sol) polarization free energy of solvation -35.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -190.230 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.915 kcal (6) G-S(sol) free energy of system = (1) + (5) -190.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds