Wall clock time and date at job start Mon Mar 8 2021 11:51:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86295 * 1 3 3 C 1.86300 * 109.47474 * 2 1 4 4 C 1.86301 * 109.47616 * 240.00059 * 2 1 3 5 5 C 1.86301 * 109.47171 * 119.99715 * 2 1 3 6 6 C 1.53002 * 109.46853 * 60.00208 * 5 2 1 7 7 C 1.53001 * 109.47318 * 179.97438 * 6 5 2 8 8 S 1.81393 * 109.47375 * 179.97438 * 7 6 5 9 9 O 1.42097 * 110.54531 * 68.37855 * 8 7 6 10 10 O 1.42108 * 110.54444 * 291.62713 * 8 7 6 11 11 O 1.52200 * 104.45305 * 180.02562 * 8 7 6 12 12 C 1.35901 * 113.99979 * 74.99679 * 11 8 7 13 13 C 1.38723 * 120.03858 * 90.00645 * 12 11 8 14 14 C 1.38176 * 119.99194 * 180.02562 * 13 12 11 15 15 C 1.50706 * 119.96068 * 180.02562 * 14 13 12 16 16 O 1.42889 * 109.46757 * 299.97797 * 15 14 13 17 17 Si 1.86304 * 109.46987 * 179.97438 * 15 14 13 18 18 H 1.48500 * 109.47073 * 59.99961 * 17 15 14 19 19 H 1.48501 * 109.46660 * 180.02562 * 17 15 14 20 20 H 1.48493 * 109.47130 * 299.99872 * 17 15 14 21 21 C 1.38215 * 120.08237 * 359.97438 * 14 13 12 22 22 C 1.38518 * 120.08211 * 359.97438 * 21 14 13 23 23 F 1.35097 * 119.99627 * 179.97438 * 22 21 14 24 24 C 1.38345 * 120.00758 * 359.97438 * 22 21 14 25 25 H 1.08998 * 109.47378 * 299.99860 * 1 2 3 26 26 H 1.08998 * 109.47085 * 60.00257 * 1 2 3 27 27 H 1.09003 * 109.46899 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47726 * 180.02562 * 3 2 1 29 29 H 1.09006 * 109.47277 * 300.00274 * 3 2 1 30 30 H 1.09005 * 109.47071 * 59.99876 * 3 2 1 31 31 H 1.09006 * 109.46538 * 300.00087 * 4 2 1 32 32 H 1.08998 * 109.47152 * 59.99725 * 4 2 1 33 33 H 1.08996 * 109.47505 * 179.97438 * 4 2 1 34 34 H 1.08998 * 109.47316 * 300.00462 * 5 2 1 35 35 H 1.09002 * 109.47431 * 180.02562 * 5 2 1 36 36 H 1.09005 * 109.47319 * 59.99883 * 6 5 2 37 37 H 1.08996 * 109.47315 * 299.99840 * 6 5 2 38 38 H 1.09005 * 109.46824 * 59.99822 * 7 6 5 39 39 H 1.09002 * 109.47396 * 300.00161 * 7 6 5 40 40 H 1.08000 * 120.00491 * 0.03929 * 13 12 11 41 41 H 1.09003 * 109.46723 * 59.97823 * 15 14 13 42 42 H 0.96702 * 114.00436 * 299.99340 * 16 15 14 43 43 H 1.07996 * 119.95886 * 179.72432 * 21 14 13 44 44 H 1.07998 * 120.04639 * 180.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8629 0.0000 0.0000 3 6 2.4841 1.7564 0.0000 4 6 2.4841 -0.8782 -1.5211 5 6 2.4840 -0.8782 1.5212 6 6 1.9740 -2.3207 1.5212 7 6 2.4845 -3.0422 2.7701 8 16 1.8792 -4.7521 2.7705 9 8 2.4909 -5.4979 1.7270 10 8 0.4719 -4.7830 2.9651 11 8 2.4474 -5.3559 4.0468 12 6 1.8165 -4.9486 5.1795 13 6 0.7291 -5.6613 5.6634 14 6 0.0881 -5.2459 6.8148 15 6 -1.0928 -6.0211 7.3401 16 8 -2.1279 -6.0375 6.3553 17 14 -1.7261 -5.2107 8.8935 18 1 -2.1433 -3.8180 8.5906 19 1 -2.8893 -5.9749 9.4115 20 1 -0.6503 -5.1937 9.9169 21 6 0.5291 -4.1211 7.4860 22 6 1.6152 -3.4076 7.0063 23 9 2.0445 -2.3080 7.6634 24 6 2.2604 -3.8209 5.8544 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 3.5740 1.7565 -0.0005 29 1 2.1207 2.2703 -0.8900 30 1 2.1207 2.2703 0.8900 31 1 2.1207 -1.9059 -1.5211 32 1 2.1208 -0.3644 -2.4111 33 1 3.5741 -0.8778 -1.5213 34 1 2.1206 -0.3644 2.4111 35 1 3.5740 -0.8778 1.5214 36 1 2.3373 -2.8345 0.6312 37 1 0.8840 -2.3207 1.5212 38 1 2.1215 -2.5284 3.6603 39 1 3.5745 -3.0422 2.7697 40 1 0.3838 -6.5408 5.1403 41 1 -0.7865 -7.0433 7.5625 42 1 -2.4499 -5.1597 6.1083 43 1 0.0238 -3.7957 8.3832 44 1 3.1075 -3.2653 5.4801 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_8925532_14927650.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 11:51:40 Heat of formation + Delta-G solvation = -203.692521 kcal Electronic energy + Delta-G solvation = -27340.441413 eV Core-core repulsion = 23230.733047 eV Total energy + Delta-G solvation = -4109.708366 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 350.102 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -50.25073 -42.41459 -39.91754 -38.32079 -37.55282 -37.21004 -36.06457 -32.91757 -31.64724 -29.79529 -28.60961 -28.47652 -28.44109 -27.33902 -25.14979 -23.63641 -22.85163 -21.55447 -19.72827 -19.20337 -18.85829 -18.29369 -17.91649 -17.55591 -17.21709 -16.96940 -16.77960 -16.26710 -16.00228 -15.75497 -15.44876 -14.96075 -14.88437 -14.34704 -14.24592 -14.21924 -14.14769 -14.06847 -13.75332 -13.70598 -13.41921 -13.33059 -13.29829 -13.26410 -13.24621 -13.20934 -13.15419 -13.12241 -13.06886 -12.43284 -12.25152 -12.06886 -11.98207 -11.93988 -10.90151 -10.86793 -10.75031 -10.65404 -10.41540 -10.12800 -1.23657 -0.45145 -0.32459 0.80529 0.96388 1.27973 1.33901 1.65312 1.76175 1.77791 1.79382 1.87844 2.43282 2.55042 2.69082 2.81546 3.07149 3.24058 3.36505 3.39956 3.46680 3.47974 3.69341 3.74255 3.92221 4.13436 4.23579 4.38407 4.41384 4.44096 4.53794 4.58664 4.65314 4.66369 4.69214 4.69847 4.70513 4.71645 4.72999 4.82182 4.84108 5.17605 5.32785 5.41023 5.49016 5.51016 6.39103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.453 4.453 2 Si 1.003 2.997 3 C -0.449 4.449 4 C -0.454 4.454 5 C -0.406 4.406 6 C -0.101 4.101 7 C -0.648 4.648 8 S 2.583 3.417 9 O -0.919 6.919 10 O -0.942 6.942 11 O -0.661 6.661 12 C 0.099 3.901 13 C -0.070 4.070 14 C -0.072 4.072 15 C -0.084 4.084 16 O -0.530 6.530 17 Si 0.945 3.055 18 H -0.246 1.246 19 H -0.245 1.245 20 H -0.246 1.246 21 C -0.144 4.144 22 C 0.131 3.869 23 F -0.122 7.122 24 C -0.167 4.167 25 H 0.069 0.931 26 H 0.070 0.930 27 H 0.070 0.930 28 H 0.068 0.932 29 H 0.070 0.930 30 H 0.068 0.932 31 H 0.070 0.930 32 H 0.070 0.930 33 H 0.069 0.931 34 H 0.081 0.919 35 H 0.081 0.919 36 H 0.083 0.917 37 H 0.083 0.917 38 H 0.135 0.865 39 H 0.141 0.859 40 H 0.156 0.844 41 H 0.130 0.870 42 H 0.381 0.619 43 H 0.147 0.853 44 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.168 3.614 2.547 4.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.560 4.560 2 Si 1.200 2.800 3 C -0.557 4.557 4 C -0.561 4.561 5 C -0.492 4.492 6 C -0.140 4.140 7 C -0.776 4.776 8 S 2.679 3.321 9 O -0.917 6.917 10 O -0.940 6.940 11 O -0.619 6.619 12 C 0.058 3.942 13 C -0.091 4.091 14 C -0.073 4.073 15 C -0.194 4.194 16 O -0.335 6.335 17 Si 0.767 3.233 18 H -0.170 1.170 19 H -0.169 1.169 20 H -0.170 1.170 21 C -0.163 4.163 22 C 0.111 3.889 23 F -0.101 7.101 24 C -0.188 4.188 25 H 0.088 0.912 26 H 0.089 0.911 27 H 0.089 0.911 28 H 0.087 0.913 29 H 0.089 0.911 30 H 0.087 0.913 31 H 0.089 0.911 32 H 0.089 0.911 33 H 0.089 0.911 34 H 0.100 0.900 35 H 0.100 0.900 36 H 0.102 0.898 37 H 0.102 0.898 38 H 0.153 0.847 39 H 0.159 0.841 40 H 0.174 0.826 41 H 0.147 0.853 42 H 0.229 0.771 43 H 0.164 0.836 44 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -0.507 2.638 3.163 4.150 hybrid contribution 0.867 1.196 -0.341 1.516 sum 0.360 3.834 2.822 4.775 Atomic orbital electron populations 1.26171 1.20649 1.04625 1.04604 0.79314 0.67282 0.67012 0.66440 1.26109 1.06243 1.18830 1.04516 1.26178 1.06374 1.08187 1.15371 1.26172 1.06300 1.00386 1.16342 1.20983 1.01719 0.97011 0.94256 1.30948 1.13751 1.24110 1.08762 1.05897 0.74854 0.77432 0.73876 1.93674 1.77647 1.67709 1.52650 1.93680 1.30963 1.86152 1.83240 1.85770 1.70351 1.76170 1.29619 1.17612 0.94072 0.95560 0.86993 1.21265 0.92152 1.00190 0.95466 1.20151 0.97721 0.94864 0.94577 1.25109 0.86854 1.06096 1.01368 1.86569 1.52699 1.34256 1.60000 0.85733 0.81563 0.80069 0.75968 1.16960 1.16856 1.16988 1.21315 0.97297 0.95952 1.01760 1.17006 0.94775 0.85484 0.91615 1.91596 1.88916 1.50007 1.79559 1.21285 1.02718 0.98031 0.96783 0.91173 0.91085 0.91095 0.91254 0.91130 0.91266 0.91088 0.91088 0.91145 0.90041 0.89975 0.89826 0.89819 0.84678 0.84088 0.82647 0.85275 0.77107 0.83589 0.82497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.45 0.87 8.65 101.05 0.87 1.74 16 2 Si 1.00 -3.24 12.19 -169.99 -2.07 -5.31 16 3 C -0.45 0.91 8.65 101.05 0.87 1.78 16 4 C -0.45 0.80 8.65 101.05 0.87 1.67 16 5 C -0.41 1.19 4.45 37.16 0.17 1.36 16 6 C -0.10 0.20 4.59 -26.73 -0.12 0.08 16 7 C -0.65 1.47 5.47 37.16 0.20 1.68 16 8 S 2.58 3.22 5.17 -107.50 -0.56 2.66 16 9 O -0.92 -4.39 18.09 -67.03 -1.21 -5.61 16 10 O -0.94 -2.82 16.26 -67.04 -1.09 -3.91 16 11 O -0.66 -0.75 10.05 -51.75 -0.52 -1.27 16 12 C 0.10 0.05 4.79 -39.23 -0.19 -0.14 16 13 C -0.07 -0.02 8.61 -39.42 -0.34 -0.36 16 14 C -0.07 0.08 5.39 -104.65 -0.56 -0.48 16 15 C -0.08 0.18 2.82 36.01 0.10 0.28 16 16 O -0.53 0.47 12.77 -35.23 -0.45 0.02 16 17 Si 0.95 -2.28 25.07 -169.99 -4.26 -6.54 16 18 H -0.25 0.58 7.11 56.52 0.40 0.98 16 19 H -0.25 0.20 7.11 56.52 0.40 0.60 16 20 H -0.25 0.51 7.11 56.52 0.40 0.91 16 21 C -0.14 0.20 8.65 -39.49 -0.34 -0.14 16 22 C 0.13 -0.11 7.30 -39.44 -0.29 -0.40 16 23 F -0.12 0.02 17.27 2.25 0.04 0.06 16 24 C -0.17 0.20 8.44 -39.37 -0.33 -0.13 16 25 H 0.07 -0.14 7.96 -51.93 -0.41 -0.55 16 26 H 0.07 -0.12 7.96 -51.93 -0.41 -0.53 16 27 H 0.07 -0.13 7.79 -51.93 -0.40 -0.54 16 28 H 0.07 -0.13 7.96 -51.93 -0.41 -0.55 16 29 H 0.07 -0.12 7.96 -51.93 -0.41 -0.53 16 30 H 0.07 -0.14 7.96 -51.93 -0.41 -0.55 16 31 H 0.07 -0.12 7.79 -51.93 -0.40 -0.52 16 32 H 0.07 -0.11 7.96 -51.93 -0.41 -0.52 16 33 H 0.07 -0.12 7.96 -51.93 -0.41 -0.54 16 34 H 0.08 -0.28 7.96 -51.93 -0.41 -0.69 16 35 H 0.08 -0.28 7.96 -51.93 -0.41 -0.69 16 36 H 0.08 -0.21 7.79 -51.93 -0.40 -0.62 16 37 H 0.08 -0.23 7.79 -51.93 -0.40 -0.64 16 38 H 0.13 -0.55 6.61 -51.92 -0.34 -0.89 16 39 H 0.14 -0.58 8.14 -51.92 -0.42 -1.01 16 40 H 0.16 0.02 8.06 -52.49 -0.42 -0.41 16 41 H 0.13 -0.43 7.96 -51.93 -0.41 -0.85 16 42 H 0.38 -1.51 8.70 45.56 0.40 -1.12 16 43 H 0.15 -0.42 4.87 -52.49 -0.26 -0.68 16 44 H 0.16 -0.59 7.50 -52.49 -0.39 -0.99 16 LS Contribution 379.33 15.07 5.72 5.72 Total: 0.00 -8.68 379.33 -9.48 -18.16 By element: Atomic # 1 Polarization: -4.92 SS G_CDS: -5.99 Total: -10.91 kcal Atomic # 6 Polarization: 6.01 SS G_CDS: 0.92 Total: 6.93 kcal Atomic # 8 Polarization: -7.49 SS G_CDS: -3.27 Total: -10.76 kcal Atomic # 9 Polarization: 0.02 SS G_CDS: 0.04 Total: 0.06 kcal Atomic # 14 Polarization: -5.52 SS G_CDS: -6.33 Total: -11.85 kcal Atomic # 16 Polarization: 3.22 SS G_CDS: -0.56 Total: 2.66 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -8.68 -9.48 -18.16 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_8925532_14927650.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -185.531 kcal (2) G-P(sol) polarization free energy of solvation -8.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -194.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.162 kcal (6) G-S(sol) free energy of system = (1) + (5) -203.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds