Wall clock time and date at job start Mon Mar 8 2021 11:51:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86295 * 1 3 3 C 1.86300 * 109.47474 * 2 1 4 4 C 1.86301 * 109.47616 * 240.00059 * 2 1 3 5 5 C 1.86301 * 109.47171 * 119.99715 * 2 1 3 6 6 C 1.53002 * 109.46853 * 60.00208 * 5 2 1 7 7 C 1.53001 * 109.47318 * 179.97438 * 6 5 2 8 8 S 1.81393 * 109.47375 * 179.97438 * 7 6 5 9 9 O 1.42097 * 110.54531 * 68.37855 * 8 7 6 10 10 O 1.42108 * 110.54444 * 291.62713 * 8 7 6 11 11 O 1.52200 * 104.45305 * 180.02562 * 8 7 6 12 12 C 1.35901 * 113.99979 * 74.99679 * 11 8 7 13 13 C 1.38723 * 120.03858 * 90.00645 * 12 11 8 14 14 C 1.38176 * 119.99194 * 180.02562 * 13 12 11 15 15 C 1.50706 * 119.96068 * 180.02562 * 14 13 12 16 16 O 1.42889 * 109.46757 * 299.97797 * 15 14 13 17 17 Si 1.86304 * 109.46987 * 179.97438 * 15 14 13 18 18 H 1.48500 * 109.47073 * 59.99961 * 17 15 14 19 19 H 1.48501 * 109.46660 * 180.02562 * 17 15 14 20 20 H 1.48493 * 109.47130 * 299.99872 * 17 15 14 21 21 C 1.38215 * 120.08237 * 359.97438 * 14 13 12 22 22 C 1.38518 * 120.08211 * 359.97438 * 21 14 13 23 23 F 1.35097 * 119.99627 * 179.97438 * 22 21 14 24 24 C 1.38345 * 120.00758 * 359.97438 * 22 21 14 25 25 H 1.08998 * 109.47378 * 299.99860 * 1 2 3 26 26 H 1.08998 * 109.47085 * 60.00257 * 1 2 3 27 27 H 1.09003 * 109.46899 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47726 * 180.02562 * 3 2 1 29 29 H 1.09006 * 109.47277 * 300.00274 * 3 2 1 30 30 H 1.09005 * 109.47071 * 59.99876 * 3 2 1 31 31 H 1.09006 * 109.46538 * 300.00087 * 4 2 1 32 32 H 1.08998 * 109.47152 * 59.99725 * 4 2 1 33 33 H 1.08996 * 109.47505 * 179.97438 * 4 2 1 34 34 H 1.08998 * 109.47316 * 300.00462 * 5 2 1 35 35 H 1.09002 * 109.47431 * 180.02562 * 5 2 1 36 36 H 1.09005 * 109.47319 * 59.99883 * 6 5 2 37 37 H 1.08996 * 109.47315 * 299.99840 * 6 5 2 38 38 H 1.09005 * 109.46824 * 59.99822 * 7 6 5 39 39 H 1.09002 * 109.47396 * 300.00161 * 7 6 5 40 40 H 1.08000 * 120.00491 * 0.03929 * 13 12 11 41 41 H 1.09003 * 109.46723 * 59.97823 * 15 14 13 42 42 H 0.96702 * 114.00436 * 299.99340 * 16 15 14 43 43 H 1.07996 * 119.95886 * 179.72432 * 21 14 13 44 44 H 1.07998 * 120.04639 * 180.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8629 0.0000 0.0000 3 6 2.4841 1.7564 0.0000 4 6 2.4841 -0.8782 -1.5211 5 6 2.4840 -0.8782 1.5212 6 6 1.9740 -2.3207 1.5212 7 6 2.4845 -3.0422 2.7701 8 16 1.8792 -4.7521 2.7705 9 8 2.4909 -5.4979 1.7270 10 8 0.4719 -4.7830 2.9651 11 8 2.4474 -5.3559 4.0468 12 6 1.8165 -4.9486 5.1795 13 6 0.7291 -5.6613 5.6634 14 6 0.0881 -5.2459 6.8148 15 6 -1.0928 -6.0211 7.3401 16 8 -2.1279 -6.0375 6.3553 17 14 -1.7261 -5.2107 8.8935 18 1 -2.1433 -3.8180 8.5906 19 1 -2.8893 -5.9749 9.4115 20 1 -0.6503 -5.1937 9.9169 21 6 0.5291 -4.1211 7.4860 22 6 1.6152 -3.4076 7.0063 23 9 2.0445 -2.3080 7.6634 24 6 2.2604 -3.8209 5.8544 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 3.5740 1.7565 -0.0005 29 1 2.1207 2.2703 -0.8900 30 1 2.1207 2.2703 0.8900 31 1 2.1207 -1.9059 -1.5211 32 1 2.1208 -0.3644 -2.4111 33 1 3.5741 -0.8778 -1.5213 34 1 2.1206 -0.3644 2.4111 35 1 3.5740 -0.8778 1.5214 36 1 2.3373 -2.8345 0.6312 37 1 0.8840 -2.3207 1.5212 38 1 2.1215 -2.5284 3.6603 39 1 3.5745 -3.0422 2.7697 40 1 0.3838 -6.5408 5.1403 41 1 -0.7865 -7.0433 7.5625 42 1 -2.4499 -5.1597 6.1083 43 1 0.0238 -3.7957 8.3832 44 1 3.1075 -3.2653 5.4801 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_8925532_14927650.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 11:51:39 Heat of formation + Delta-G solvation = -200.803673 kcal Electronic energy + Delta-G solvation = -27340.316143 eV Core-core repulsion = 23230.733047 eV Total energy + Delta-G solvation = -4109.583096 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 350.102 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -50.17393 -42.39181 -39.84373 -38.47012 -37.46720 -37.33275 -35.87007 -32.81286 -31.57193 -29.61562 -28.42413 -28.30185 -28.25185 -27.20010 -25.10940 -23.51767 -22.67184 -21.51759 -19.72064 -19.17994 -18.86231 -18.24026 -17.82107 -17.51356 -17.13503 -16.88529 -16.64819 -16.12251 -15.90013 -15.72893 -15.35787 -14.83859 -14.71810 -14.27124 -14.15124 -14.06778 -14.02566 -13.96871 -13.58396 -13.55549 -13.46003 -13.37994 -13.26241 -13.19264 -13.14258 -13.11271 -13.03857 -12.97855 -12.95531 -12.26920 -12.08665 -11.86758 -11.81885 -11.81036 -10.71132 -10.67988 -10.61658 -10.45708 -10.28837 -10.05604 -1.23340 -0.36428 -0.26492 0.82258 1.12290 1.47426 1.51116 1.91727 1.92984 1.96423 2.01380 2.01714 2.43855 2.73679 2.74610 2.84828 3.21466 3.38271 3.48838 3.60138 3.62909 3.67232 3.81022 3.86118 4.16365 4.32518 4.40842 4.51462 4.56790 4.62407 4.66128 4.76622 4.79530 4.81916 4.83948 4.86987 4.87128 4.87838 4.89555 4.92631 5.09633 5.41671 5.45665 5.60103 5.66858 5.67600 6.66557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.472 4.472 2 Si 1.069 2.931 3 C -0.464 4.464 4 C -0.475 4.475 5 C -0.410 4.410 6 C -0.121 4.121 7 C -0.627 4.627 8 S 2.578 3.422 9 O -0.966 6.966 10 O -0.969 6.969 11 O -0.666 6.666 12 C 0.081 3.919 13 C -0.087 4.087 14 C -0.071 4.071 15 C -0.087 4.087 16 O -0.548 6.548 17 Si 0.979 3.021 18 H -0.243 1.243 19 H -0.270 1.270 20 H -0.247 1.247 21 C -0.142 4.142 22 C 0.126 3.874 23 F -0.125 7.125 24 C -0.161 4.161 25 H 0.072 0.928 26 H 0.065 0.935 27 H 0.067 0.933 28 H 0.069 0.931 29 H 0.064 0.936 30 H 0.070 0.930 31 H 0.067 0.933 32 H 0.065 0.935 33 H 0.070 0.930 34 H 0.094 0.906 35 H 0.093 0.907 36 H 0.085 0.915 37 H 0.088 0.912 38 H 0.160 0.840 39 H 0.167 0.833 40 H 0.147 0.853 41 H 0.138 0.862 42 H 0.392 0.608 43 H 0.161 0.839 44 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.544 5.111 3.670 6.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.578 4.578 2 Si 1.261 2.739 3 C -0.570 4.570 4 C -0.581 4.581 5 C -0.496 4.496 6 C -0.160 4.160 7 C -0.758 4.758 8 S 2.679 3.321 9 O -0.964 6.964 10 O -0.968 6.968 11 O -0.625 6.625 12 C 0.039 3.961 13 C -0.108 4.108 14 C -0.071 4.071 15 C -0.197 4.197 16 O -0.356 6.356 17 Si 0.801 3.199 18 H -0.166 1.166 19 H -0.195 1.195 20 H -0.170 1.170 21 C -0.161 4.161 22 C 0.107 3.893 23 F -0.103 7.103 24 C -0.181 4.181 25 H 0.091 0.909 26 H 0.084 0.916 27 H 0.087 0.913 28 H 0.088 0.912 29 H 0.083 0.917 30 H 0.089 0.911 31 H 0.086 0.914 32 H 0.084 0.916 33 H 0.089 0.911 34 H 0.112 0.888 35 H 0.111 0.889 36 H 0.103 0.897 37 H 0.107 0.893 38 H 0.178 0.822 39 H 0.185 0.815 40 H 0.165 0.835 41 H 0.155 0.845 42 H 0.242 0.758 43 H 0.178 0.822 44 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges 0.189 4.106 4.258 5.918 hybrid contribution 0.624 0.772 -0.691 1.209 sum 0.812 4.877 3.567 6.097 Atomic orbital electron populations 1.26412 1.22501 1.04431 1.04482 0.78293 0.65174 0.65314 0.65096 1.26288 1.06430 1.19959 1.04356 1.26449 1.06597 1.08386 1.16619 1.26215 1.07125 0.99370 1.16860 1.21227 1.02449 0.97828 0.94455 1.30808 1.15304 1.19751 1.09908 1.05888 0.74195 0.78867 0.73137 1.93609 1.78137 1.70205 1.54475 1.93634 1.32617 1.87149 1.83376 1.85729 1.70144 1.76835 1.29788 1.17815 0.94580 0.96545 0.87121 1.21383 0.92766 1.00409 0.96214 1.20203 0.97781 0.95032 0.94132 1.25267 0.86353 1.06771 1.01301 1.86536 1.53038 1.35551 1.60450 0.85267 0.80163 0.79490 0.74992 1.16594 1.19515 1.17033 1.21497 0.97119 0.95456 1.02005 1.17072 0.94983 0.85498 0.91796 1.91594 1.88969 1.50126 1.79619 1.21493 1.03055 0.97307 0.96261 0.90930 0.91617 0.91337 0.91158 0.91703 0.91060 0.91416 0.91609 0.91082 0.88757 0.88856 0.89656 0.89306 0.82234 0.81512 0.83508 0.84486 0.75810 0.82153 0.79788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.47 1.84 8.65 113.37 0.98 2.82 16 2 Si 1.07 -7.70 12.19 68.60 0.84 -6.87 16 3 C -0.46 2.20 8.65 113.37 0.98 3.18 16 4 C -0.47 1.58 8.65 113.37 0.98 2.56 16 5 C -0.41 3.27 4.45 71.98 0.32 3.59 16 6 C -0.12 0.62 4.59 30.60 0.14 0.76 16 7 C -0.63 3.84 5.47 71.98 0.39 4.23 16 8 S 2.58 8.48 5.17 -56.49 -0.29 8.18 16 9 O -0.97 -10.99 18.09 -118.57 -2.15 -13.14 16 10 O -0.97 -7.17 16.26 -118.57 -1.93 -9.10 16 11 O -0.67 -1.99 10.05 -61.53 -0.62 -2.61 16 12 C 0.08 0.08 4.79 22.50 0.11 0.19 16 13 C -0.09 -0.13 8.61 22.37 0.19 0.06 16 14 C -0.07 0.15 5.39 -19.88 -0.11 0.04 16 15 C -0.09 0.35 2.82 71.24 0.20 0.55 16 16 O -0.55 0.60 12.77 -148.98 -1.90 -1.30 16 17 Si 0.98 -5.03 25.07 68.60 1.72 -3.31 16 18 H -0.24 1.40 7.11 99.48 0.71 2.11 16 19 H -0.27 0.27 7.11 99.48 0.71 0.98 16 20 H -0.25 1.25 7.11 99.48 0.71 1.96 16 21 C -0.14 0.52 8.65 22.33 0.19 0.71 16 22 C 0.13 -0.38 7.30 22.36 0.16 -0.21 16 23 F -0.12 0.25 17.27 44.97 0.78 1.02 16 24 C -0.16 0.59 8.44 22.41 0.19 0.78 16 25 H 0.07 -0.32 7.96 -2.39 -0.02 -0.34 16 26 H 0.06 -0.19 7.96 -2.39 -0.02 -0.21 16 27 H 0.07 -0.23 7.79 -2.39 -0.02 -0.25 16 28 H 0.07 -0.34 7.96 -2.39 -0.02 -0.35 16 29 H 0.06 -0.23 7.96 -2.38 -0.02 -0.24 16 30 H 0.07 -0.36 7.96 -2.38 -0.02 -0.37 16 31 H 0.07 -0.18 7.79 -2.38 -0.02 -0.20 16 32 H 0.06 -0.16 7.96 -2.39 -0.02 -0.18 16 33 H 0.07 -0.25 7.96 -2.39 -0.02 -0.27 16 34 H 0.09 -0.94 7.96 -2.39 -0.02 -0.96 16 35 H 0.09 -0.90 7.96 -2.39 -0.02 -0.91 16 36 H 0.08 -0.46 7.79 -2.38 -0.02 -0.48 16 37 H 0.09 -0.55 7.79 -2.39 -0.02 -0.57 16 38 H 0.16 -1.73 6.61 -2.39 -0.02 -1.74 16 39 H 0.17 -1.82 8.14 -2.39 -0.02 -1.84 16 40 H 0.15 0.35 8.06 -2.91 -0.02 0.33 16 41 H 0.14 -0.85 7.96 -2.39 -0.02 -0.87 16 42 H 0.39 -2.88 8.70 -74.06 -0.64 -3.53 16 43 H 0.16 -1.14 4.87 -2.91 -0.01 -1.15 16 44 H 0.18 -1.86 7.50 -2.91 -0.02 -1.89 16 Total: 0.00 -21.14 379.33 2.30 -18.83 By element: Atomic # 1 Polarization: -12.10 SS G_CDS: 1.12 Total: -10.99 kcal Atomic # 6 Polarization: 14.53 SS G_CDS: 4.74 Total: 19.26 kcal Atomic # 8 Polarization: -19.54 SS G_CDS: -6.59 Total: -26.14 kcal Atomic # 9 Polarization: 0.25 SS G_CDS: 0.78 Total: 1.02 kcal Atomic # 14 Polarization: -12.74 SS G_CDS: 2.56 Total: -10.18 kcal Atomic # 16 Polarization: 8.48 SS G_CDS: -0.29 Total: 8.18 kcal Total: -21.14 2.30 -18.83 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_8925532_14927650.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -181.969 kcal (2) G-P(sol) polarization free energy of solvation -21.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -203.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.835 kcal (6) G-S(sol) free energy of system = (1) + (5) -200.804 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds