Wall clock time and date at job start Mon Mar 8 2021 12:16:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.45198 * 109.47533 * 2 1 4 4 C 1.34225 * 116.99943 * 180.02562 * 3 2 1 5 5 O 1.20827 * 120.00488 * 0.02562 * 4 3 2 6 6 C 1.50703 * 119.99762 * 180.02562 * 4 3 2 7 7 H 1.08996 * 112.85169 * 48.80051 * 6 4 3 8 8 C 1.53781 * 113.61417 * 180.02562 * 6 4 3 9 9 C 1.53786 * 87.17350 * 139.93966 * 8 6 4 10 10 F 1.39897 * 113.61259 * 220.06188 * 9 8 6 11 11 C 1.52993 * 113.61559 * 89.15694 * 9 8 6 12 12 S 1.81398 * 109.47175 * 185.00129 * 11 9 8 13 13 O 1.42106 * 110.54507 * 291.62644 * 12 11 9 14 14 O 1.42099 * 110.54292 * 68.37425 * 12 11 9 15 15 O 1.52199 * 104.44952 * 180.02562 * 12 11 9 16 16 C 1.35898 * 113.99984 * 75.00418 * 15 12 11 17 17 C 1.38674 * 120.03514 * 269.72079 * 16 15 12 18 18 C 1.38394 * 119.91462 * 179.73008 * 17 16 15 19 19 F 1.35097 * 119.99178 * 180.31821 * 18 17 16 20 20 C 1.38469 * 120.00423 * 0.56899 * 18 17 16 21 21 C 1.38249 * 120.08592 * 359.70353 * 20 18 17 22 22 C 1.50705 * 119.96120 * 180.02562 * 21 20 18 23 23 O 1.42898 * 109.47283 * 244.98243 * 22 21 20 24 24 Si 1.86304 * 109.46981 * 4.97868 * 22 21 20 25 25 C 1.38133 * 120.08133 * 0.02562 * 21 20 18 26 26 C 1.53782 * 113.61283 * 277.49868 * 6 4 3 27 27 H 1.08998 * 109.47169 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.46271 * 299.99875 * 1 2 3 29 29 H 1.08997 * 109.47103 * 59.99513 * 1 2 3 30 30 H 1.09007 * 109.46820 * 240.00172 * 2 1 3 31 31 H 1.09002 * 109.47355 * 120.00874 * 2 1 3 32 32 H 1.09002 * 113.61445 * 254.52965 * 8 6 4 33 33 H 1.09002 * 113.61408 * 25.34696 * 8 6 4 34 34 H 1.08998 * 109.47564 * 305.00195 * 11 9 8 35 35 H 1.08999 * 109.47209 * 65.00143 * 11 9 8 36 36 H 1.07995 * 120.04176 * 0.02562 * 17 16 15 37 37 H 1.08001 * 119.95614 * 179.72587 * 20 18 17 38 38 H 1.08998 * 109.47598 * 124.97956 * 22 21 20 39 39 H 0.96706 * 114.00187 * 59.99223 * 23 22 21 40 40 H 1.48501 * 109.99918 * 58.68283 * 24 22 21 41 41 H 1.48499 * 110.00026 * 180.02562 * 24 22 21 42 42 H 1.08005 * 120.00183 * 180.02562 * 25 21 20 43 43 H 1.08997 * 113.61668 * 334.56418 * 26 6 4 44 44 H 1.08998 * 113.61674 * 105.38927 * 26 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3689 0.0000 4 6 3.3448 1.5447 -0.0005 5 8 4.0809 0.5865 -0.0015 6 6 3.9209 2.9372 0.0000 7 1 3.4717 3.5808 0.7564 8 6 5.4584 2.9679 -0.0013 9 6 5.3583 4.1425 -0.9889 10 9 6.3107 4.0966 -2.0126 11 6 5.2808 5.5105 -0.3083 12 16 5.0182 6.7953 -1.5616 13 8 6.1712 6.9367 -2.3802 14 8 3.7233 6.6758 -2.1345 15 8 4.9601 8.0931 -0.7686 16 6 6.1705 8.5261 -0.3278 17 6 6.6408 8.1259 0.9139 18 6 7.8762 8.5638 1.3580 19 9 8.3387 8.1697 2.5646 20 6 8.6359 9.4101 0.5679 21 6 8.1647 9.8137 -0.6675 22 6 8.9940 10.7343 -1.5253 23 8 8.3163 11.9831 -1.6773 24 14 10.6462 11.0195 -0.7128 25 6 6.9345 9.3743 -1.1167 26 6 3.9858 3.5776 -1.3967 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3632 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 1.8933 -0.5138 -0.8901 31 1 1.8934 -0.5140 0.8899 32 1 5.8905 3.2422 0.9610 33 1 5.9125 2.0745 -0.4300 34 1 4.4516 5.5180 0.3990 35 1 6.2127 5.7056 0.2223 36 1 6.0458 7.4694 1.5314 37 1 9.5979 9.7549 0.9172 38 1 9.1444 10.2809 -2.5050 39 1 8.1485 12.4437 -0.8437 40 1 11.3476 9.7248 -0.5201 41 1 11.4734 11.9263 -1.5486 42 1 6.5678 9.6901 -2.0822 43 1 4.0375 2.8515 -2.2079 44 1 3.2278 4.3433 -1.5616 There are 69 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 69 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_8925532_15494190.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 12:16:15 Heat of formation + Delta-G solvation = -246.348116 kcal Electronic energy + Delta-G solvation = -35530.014090 eV Core-core repulsion = 30179.854500 eV Total energy + Delta-G solvation = -5350.159589 eV No. of doubly occupied orbitals = 69 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 393.092 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -50.11479 -49.11745 -42.44706 -41.95079 -39.86870 -39.62718 -38.58592 -37.64690 -37.52884 -37.38897 -32.93244 -32.74168 -31.62474 -31.52333 -27.44161 -27.32311 -27.02707 -25.11844 -24.07262 -23.39113 -22.41712 -21.75433 -20.53051 -19.89688 -19.40959 -19.16218 -18.82401 -18.18773 -18.06539 -17.87539 -17.71761 -17.45676 -17.16140 -16.97813 -16.82258 -16.54081 -16.26626 -16.14935 -16.10551 -15.57840 -15.49346 -15.27145 -14.92376 -14.51289 -14.35795 -14.27765 -14.18612 -14.06942 -13.73739 -13.71121 -13.57526 -13.49088 -13.28375 -13.25314 -13.10000 -13.07467 -12.98123 -12.77776 -12.53291 -12.50013 -12.19909 -12.09417 -12.06028 -11.60542 -11.55568 -11.48572 -10.62386 -10.34793 -10.06583 -5.03066 -1.42367 -0.38870 -0.26451 0.71257 0.95281 1.22063 1.51806 1.63075 1.95050 1.99674 2.18659 2.55094 2.58248 2.77803 2.83266 2.90928 3.10855 3.20710 3.22663 3.39195 3.50796 3.61178 3.66049 3.75556 3.83545 3.86924 3.94671 4.00863 4.03495 4.20360 4.28994 4.29510 4.37991 4.42771 4.46698 4.50437 4.55562 4.65392 4.70814 4.74895 4.80491 4.87652 4.93560 4.97645 5.10858 5.37936 5.42394 6.56296 6.73227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.053 3.947 3 O -0.357 6.357 4 C 0.473 3.527 5 O -0.535 6.535 6 C -0.100 4.100 7 H 0.177 0.823 8 C -0.117 4.117 9 C 0.091 3.909 10 F -0.201 7.201 11 C -0.652 4.652 12 S 2.587 3.413 13 O -0.966 6.966 14 O -0.945 6.945 15 O -0.655 6.655 16 C 0.074 3.926 17 C -0.158 4.158 18 C 0.128 3.872 19 F -0.120 7.120 20 C -0.126 4.126 21 C -0.074 4.074 22 C -0.083 4.083 23 O -0.550 6.550 24 Si 0.785 3.215 25 C -0.092 4.092 26 C -0.162 4.162 27 H 0.096 0.904 28 H 0.071 0.929 29 H 0.067 0.933 30 H 0.066 0.934 31 H 0.072 0.928 32 H 0.131 0.869 33 H 0.101 0.899 34 H 0.211 0.789 35 H 0.184 0.816 36 H 0.194 0.806 37 H 0.175 0.825 38 H 0.115 0.885 39 H 0.399 0.601 40 H -0.277 1.277 41 H -0.296 1.296 42 H 0.140 0.860 43 H 0.105 0.895 44 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.780 2.140 8.948 9.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.020 4.020 3 O -0.274 6.274 4 C 0.317 3.683 5 O -0.424 6.424 6 C -0.118 4.118 7 H 0.194 0.806 8 C -0.155 4.155 9 C 0.072 3.928 10 F -0.181 7.181 11 C -0.780 4.780 12 S 2.686 3.314 13 O -0.964 6.964 14 O -0.943 6.943 15 O -0.614 6.614 16 C 0.032 3.968 17 C -0.178 4.178 18 C 0.109 3.891 19 F -0.099 7.099 20 C -0.144 4.144 21 C -0.074 4.074 22 C -0.192 4.192 23 O -0.359 6.359 24 Si 0.689 3.311 25 C -0.112 4.112 26 C -0.199 4.199 27 H 0.114 0.886 28 H 0.090 0.910 29 H 0.086 0.914 30 H 0.084 0.916 31 H 0.090 0.910 32 H 0.149 0.851 33 H 0.119 0.881 34 H 0.228 0.772 35 H 0.202 0.798 36 H 0.211 0.789 37 H 0.192 0.808 38 H 0.132 0.868 39 H 0.250 0.750 40 H -0.203 1.203 41 H -0.223 1.223 42 H 0.158 0.842 43 H 0.124 0.876 44 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -0.008 1.981 7.649 7.901 hybrid contribution -0.332 -1.226 -0.494 1.363 sum -0.340 0.755 7.155 7.203 Atomic orbital electron populations 1.21835 0.90696 1.04287 1.03817 1.23286 0.96941 0.79194 1.02605 1.86520 1.23988 1.33613 1.83266 1.23738 0.80716 0.92604 0.71273 1.90693 1.61158 1.44080 1.46472 1.22498 0.97190 0.90958 1.01190 0.80594 1.23600 0.93718 0.96695 1.01479 1.21831 0.88496 0.94712 0.87773 1.92967 1.66629 1.97375 1.61117 1.31204 1.18227 1.09303 1.19246 1.05590 0.74065 0.75549 0.76241 1.93656 1.52672 1.83416 1.66703 1.93634 1.40768 1.85029 1.74909 1.85755 1.39039 1.58221 1.78395 1.17825 0.81559 1.02111 0.95290 1.21562 0.96696 1.04317 0.95260 1.17055 0.92598 0.97171 0.82292 1.91614 1.88259 1.89009 1.40984 1.21499 1.01744 0.97678 0.93519 1.20141 0.94397 0.98138 0.94769 1.25400 1.05346 0.84825 1.03607 1.86531 1.80174 1.31700 1.37469 0.93882 0.71800 0.79748 0.85643 1.21390 0.94162 0.95182 1.00502 1.24005 0.96204 1.02432 0.97274 0.88580 0.90989 0.91391 0.91558 0.91005 0.85097 0.88078 0.77198 0.79849 0.78924 0.80789 0.86806 0.74996 1.20334 1.22340 0.84242 0.87613 0.86221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.62 10.29 71.98 0.74 1.36 16 2 C 0.05 0.00 6.19 71.98 0.45 0.45 16 3 O -0.36 -0.69 10.22 -51.37 -0.52 -1.22 16 4 C 0.47 1.07 7.48 71.24 0.53 1.60 16 5 O -0.53 -4.69 15.65 21.96 0.34 -4.35 16 6 C -0.10 0.52 3.91 -11.01 -0.04 0.48 16 7 H 0.18 -2.38 7.63 -2.39 -0.02 -2.40 16 8 C -0.12 0.57 6.88 31.12 0.21 0.78 16 9 C 0.09 -0.22 1.75 -10.22 -0.02 -0.24 16 10 F -0.20 -1.07 16.54 44.97 0.74 -0.33 16 11 C -0.65 5.41 5.05 71.98 0.36 5.77 16 12 S 2.59 6.01 4.92 -56.49 -0.28 5.73 16 13 O -0.97 -8.76 15.82 -118.57 -1.88 -10.63 16 14 O -0.95 -7.79 16.98 -118.57 -2.01 -9.80 16 15 O -0.66 -0.32 10.05 -61.49 -0.62 -0.94 16 16 C 0.07 -0.06 4.79 22.50 0.11 0.04 16 17 C -0.16 1.07 8.44 22.41 0.19 1.26 16 18 C 0.13 -0.78 7.30 22.36 0.16 -0.61 16 19 F -0.12 0.65 17.27 44.97 0.78 1.43 16 20 C -0.13 0.80 8.64 22.33 0.19 0.99 16 21 C -0.07 0.21 5.35 -19.89 -0.11 0.11 16 22 C -0.08 0.26 2.80 71.24 0.20 0.46 16 23 O -0.55 1.36 12.83 -148.98 -1.91 -0.55 16 24 Si 0.79 -4.50 29.80 68.60 2.04 -2.46 16 25 C -0.09 -0.10 8.68 22.37 0.19 0.10 16 26 C -0.16 0.36 7.05 31.17 0.22 0.58 16 27 H 0.10 -0.66 8.14 -2.39 -0.02 -0.68 16 28 H 0.07 -0.33 8.14 -2.39 -0.02 -0.35 16 29 H 0.07 -0.25 8.14 -2.39 -0.02 -0.27 16 30 H 0.07 0.06 8.13 -2.38 -0.02 0.04 16 31 H 0.07 0.00 8.13 -2.39 -0.02 -0.02 16 32 H 0.13 -1.46 8.10 -2.39 -0.02 -1.48 16 33 H 0.10 -0.02 7.43 -2.39 -0.02 -0.03 16 34 H 0.21 -3.78 7.33 -2.39 -0.02 -3.80 16 35 H 0.18 -2.54 6.62 -2.39 -0.02 -2.55 16 36 H 0.19 -2.88 7.52 -2.91 -0.02 -2.90 16 37 H 0.18 -1.97 4.90 -2.91 -0.01 -1.99 16 38 H 0.11 -0.11 7.96 -2.39 -0.02 -0.13 16 39 H 0.40 -4.63 8.70 -74.05 -0.64 -5.28 16 40 H -0.28 0.42 7.11 99.48 0.71 1.12 16 41 H -0.30 -0.71 7.11 99.48 0.71 0.00 16 42 H 0.14 0.41 8.06 -2.91 -0.02 0.39 16 43 H 0.11 -0.03 8.09 -2.39 -0.02 -0.05 16 44 H 0.12 -0.42 6.97 -2.39 -0.02 -0.44 16 Total: 0.00 -31.39 388.90 0.55 -30.83 By element: Atomic # 1 Polarization: -21.29 SS G_CDS: 0.47 Total: -20.82 kcal Atomic # 6 Polarization: 9.72 SS G_CDS: 3.40 Total: 13.12 kcal Atomic # 8 Polarization: -20.90 SS G_CDS: -6.60 Total: -27.50 kcal Atomic # 9 Polarization: -0.42 SS G_CDS: 1.52 Total: 1.10 kcal Atomic # 14 Polarization: -4.50 SS G_CDS: 2.04 Total: -2.46 kcal Atomic # 16 Polarization: 6.01 SS G_CDS: -0.28 Total: 5.73 kcal Total: -31.39 0.55 -30.83 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_8925532_15494190.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -215.514 kcal (2) G-P(sol) polarization free energy of solvation -31.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -246.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.834 kcal (6) G-S(sol) free energy of system = (1) + (5) -246.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds