Wall clock time and date at job start Mon Mar 8 2021 12:22:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42905 * 1 3 3 Si 1.86298 * 109.46822 * 2 1 4 4 C 1.50703 * 109.46852 * 119.99799 * 2 1 3 5 5 C 1.38131 * 119.96214 * 65.00769 * 4 2 1 6 6 C 1.38767 * 119.99451 * 180.27619 * 5 4 2 7 7 O 1.35897 * 120.04078 * 179.69890 * 6 5 4 8 8 S 1.52201 * 113.99828 * 90.00285 * 7 6 5 9 9 O 1.42104 * 104.27758 * 191.07010 * 8 7 6 10 10 O 1.42103 * 104.27416 * 318.92621 * 8 7 6 11 11 C 1.81394 * 104.45206 * 74.99910 * 8 7 6 12 12 H 1.08998 * 112.85310 * 53.80615 * 11 8 7 13 13 C 1.53784 * 113.61311 * 185.00231 * 11 8 7 14 14 C 1.53786 * 87.08106 * 139.98141 * 13 11 8 15 15 H 1.09000 * 113.60855 * 220.01787 * 14 13 11 16 16 O 1.42900 * 113.61568 * 89.19951 * 14 13 11 17 17 C 1.42896 * 113.99719 * 149.99921 * 16 14 13 18 18 C 1.50702 * 109.46766 * 179.97438 * 17 16 14 19 19 C 1.38239 * 119.99969 * 269.72330 * 18 17 16 20 20 C 1.38232 * 119.99917 * 179.78665 * 19 18 17 21 21 C 1.38241 * 120.00096 * 0.45112 * 20 19 18 22 22 C 1.38240 * 119.99483 * 359.80701 * 21 20 19 23 23 C 1.38230 * 119.99734 * 90.00487 * 18 17 16 24 24 C 1.53785 * 87.08027 * 334.56421 * 14 13 11 25 25 C 1.38677 * 119.91299 * 359.43983 * 6 5 4 26 26 C 1.38375 * 119.91957 * 0.53812 * 25 6 5 27 27 F 1.35100 * 119.99723 * 179.72425 * 26 25 6 28 28 C 1.38253 * 119.95568 * 244.97953 * 4 2 1 29 29 H 0.96699 * 114.00057 * 60.00239 * 1 2 3 30 30 H 1.08993 * 109.47502 * 239.99860 * 2 1 3 31 31 H 1.48498 * 110.00217 * 298.67865 * 3 2 1 32 32 H 1.48504 * 110.00305 * 60.00016 * 3 2 1 33 33 H 1.08002 * 119.99873 * 359.97438 * 5 4 2 34 34 H 1.09003 * 113.61340 * 254.52746 * 13 11 8 35 35 H 1.08996 * 113.61635 * 25.43389 * 13 11 8 36 36 H 1.08996 * 109.47451 * 300.00115 * 17 16 14 37 37 H 1.09007 * 109.47374 * 59.99981 * 17 16 14 38 38 H 1.07998 * 119.99741 * 0.02562 * 19 18 17 39 39 H 1.07998 * 120.00551 * 180.27224 * 20 19 18 40 40 H 1.07994 * 120.00274 * 179.83125 * 21 20 19 41 41 H 1.07999 * 119.99558 * 180.02562 * 22 21 20 42 42 H 1.07993 * 120.00321 * 359.97377 * 23 18 17 43 43 H 1.08996 * 113.61465 * 270.88683 * 24 14 13 44 44 H 1.08999 * 113.61302 * 139.98237 * 24 14 13 45 45 H 1.08006 * 120.03619 * 180.27985 * 25 6 5 46 46 H 1.08002 * 119.96443 * 359.97438 * 28 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0499 1.7565 0.0000 4 6 1.9313 -0.7104 1.2305 5 6 1.6846 -2.0592 1.3975 6 6 2.1418 -2.7127 2.5330 7 8 1.8942 -4.0384 2.7011 8 16 2.9700 -4.9471 2.1237 9 8 2.3945 -6.2455 2.1710 10 8 3.3117 -4.3418 0.8842 11 6 4.3482 -4.8187 3.2961 12 1 4.0525 -5.0359 4.3225 13 6 5.6115 -5.5716 2.8466 14 6 6.4189 -4.3790 3.3859 15 1 7.2623 -4.1013 2.7538 16 8 6.7760 -4.5056 4.7638 17 6 8.0003 -3.8546 5.1090 18 6 8.2770 -4.0512 6.5773 19 6 7.8051 -3.1347 7.4984 20 6 8.0552 -3.3174 8.8456 21 6 8.7850 -4.4117 9.2710 22 6 9.2614 -5.3253 8.3493 23 6 9.0076 -5.1450 7.0025 24 6 5.1634 -3.5230 3.1490 25 6 2.8562 -2.0126 3.4934 26 6 3.1018 -0.6616 3.3224 27 9 3.7929 0.0233 4.2597 28 6 2.6391 -0.0114 2.1907 29 1 -0.3933 0.4417 -0.7651 30 1 1.7924 -0.5138 -0.8899 31 1 1.5879 2.4586 -1.2242 32 1 1.5614 2.4680 1.2085 33 1 1.1316 -2.6040 0.6466 34 1 5.7848 -6.4989 3.3928 35 1 5.6847 -5.6956 1.7662 36 1 8.8158 -4.2810 4.5249 37 1 7.9183 -2.7890 4.8946 38 1 7.2379 -2.2780 7.1657 39 1 7.6828 -2.6038 9.5656 40 1 8.9827 -4.5530 10.3232 41 1 9.8313 -6.1804 8.6817 42 1 9.3797 -5.8587 6.2826 43 1 5.1141 -3.0870 2.1513 44 1 4.9749 -2.7964 3.9393 45 1 3.2170 -2.5203 4.3758 46 1 2.8317 1.0430 2.0578 There are 69 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 69 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_8925532_15608174.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 12:22:03 Heat of formation + Delta-G solvation = -118.548830 kcal Electronic energy + Delta-G solvation = -35252.564445 eV Core-core repulsion = 30311.404395 eV Total energy + Delta-G solvation = -4941.160050 eV No. of doubly occupied orbitals = 69 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 395.101 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -50.17335 -42.37895 -40.90138 -40.03886 -39.78023 -38.31461 -37.69274 -37.20441 -37.12904 -33.05289 -32.73770 -31.86393 -31.57352 -27.89957 -27.41633 -26.96766 -26.51543 -25.03107 -23.55383 -23.26571 -22.35563 -21.81107 -21.06960 -19.74551 -19.12862 -18.84986 -18.74299 -18.17690 -18.10273 -17.72392 -17.50961 -17.27961 -16.83517 -16.73311 -16.60334 -16.28696 -15.96590 -15.77383 -15.58009 -15.39346 -15.23543 -14.83186 -14.39122 -14.36435 -14.27950 -14.07381 -14.05414 -13.87200 -13.70333 -13.61141 -13.55560 -13.31043 -13.27207 -13.25659 -13.17596 -13.04753 -12.45343 -12.19566 -12.15458 -11.99384 -11.95954 -11.86851 -11.31133 -10.79937 -10.70835 -10.30656 -10.04717 -9.87697 -9.82602 -5.13455 -1.16566 -0.37494 -0.24848 0.26785 0.44683 0.85821 1.06248 1.43430 1.78520 1.91171 2.28956 2.37084 2.62542 2.73568 2.88855 3.05057 3.06580 3.18390 3.30590 3.32942 3.46639 3.54444 3.66072 3.68668 3.79842 3.80641 3.84018 4.00843 4.05167 4.15668 4.18195 4.20335 4.22665 4.30059 4.37425 4.44630 4.49712 4.54469 4.58347 4.62531 4.66076 4.68595 4.73934 4.77162 4.93156 4.99129 5.06724 5.39608 5.48340 5.56412 5.58338 5.99796 6.04468 6.24274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.533 6.533 2 C -0.081 4.081 3 Si 0.686 3.314 4 C -0.027 4.027 5 C -0.071 4.071 6 C 0.099 3.901 7 O -0.658 6.658 8 S 2.593 3.407 9 O -0.920 6.920 10 O -0.943 6.943 11 C -0.635 4.635 12 H 0.162 0.838 13 C -0.108 4.108 14 C 0.080 3.920 15 H 0.090 0.910 16 O -0.356 6.356 17 C 0.102 3.898 18 C -0.096 4.096 19 C -0.098 4.098 20 C -0.123 4.123 21 C -0.112 4.112 22 C -0.123 4.123 23 C -0.098 4.098 24 C -0.141 4.141 25 C -0.160 4.160 26 C 0.127 3.873 27 F -0.122 7.122 28 C -0.133 4.133 29 H 0.386 0.614 30 H 0.090 0.910 31 H -0.254 1.254 32 H -0.250 1.250 33 H 0.151 0.849 34 H 0.102 0.898 35 H 0.107 0.893 36 H 0.063 0.937 37 H 0.063 0.937 38 H 0.123 0.877 39 H 0.125 0.875 40 H 0.124 0.876 41 H 0.125 0.875 42 H 0.123 0.877 43 H 0.114 0.886 44 H 0.098 0.902 45 H 0.160 0.840 46 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.495 4.071 -1.119 6.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.341 6.341 2 C -0.190 4.190 3 Si 0.586 3.414 4 C -0.027 4.027 5 C -0.091 4.091 6 C 0.058 3.942 7 O -0.617 6.617 8 S 2.689 3.311 9 O -0.919 6.919 10 O -0.942 6.942 11 C -0.743 4.743 12 H 0.180 0.820 13 C -0.147 4.147 14 C 0.021 3.979 15 H 0.108 0.892 16 O -0.275 6.275 17 C 0.026 3.974 18 C -0.096 4.096 19 C -0.116 4.116 20 C -0.141 4.141 21 C -0.130 4.130 22 C -0.141 4.141 23 C -0.116 4.116 24 C -0.179 4.179 25 C -0.181 4.181 26 C 0.107 3.893 27 F -0.100 7.100 28 C -0.152 4.152 29 H 0.235 0.765 30 H 0.108 0.892 31 H -0.179 1.179 32 H -0.175 1.175 33 H 0.169 0.831 34 H 0.120 0.880 35 H 0.125 0.875 36 H 0.081 0.919 37 H 0.081 0.919 38 H 0.141 0.859 39 H 0.143 0.857 40 H 0.142 0.858 41 H 0.143 0.857 42 H 0.141 0.859 43 H 0.132 0.868 44 H 0.117 0.883 45 H 0.177 0.823 46 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 4.705 4.206 -0.853 6.369 hybrid contribution -0.626 -0.198 0.229 0.696 sum 4.079 4.008 -0.624 5.753 Atomic orbital electron populations 1.86578 1.17027 1.80373 1.50141 1.24842 0.85168 1.11449 0.97559 0.95011 0.91422 0.73943 0.81019 1.18891 0.96402 0.92493 0.94951 1.21220 0.97447 0.94321 0.96158 1.17516 1.01784 0.78841 0.96101 1.85750 1.65552 1.24446 1.85919 1.05652 0.75208 0.74516 0.75679 1.93664 1.74119 1.37479 1.86589 1.93655 1.83929 1.75645 1.40954 1.32170 1.15699 1.07554 1.18884 0.81986 1.22880 0.90389 0.99400 1.02001 1.22800 0.95891 0.95276 0.83937 0.89246 1.87981 1.40354 1.75162 1.23954 1.21449 0.86546 0.97187 0.92253 1.19544 0.99723 0.96233 0.94075 1.21080 0.98578 0.98965 0.93020 1.21202 0.98994 0.98157 0.95771 1.21275 0.97337 0.94493 0.99886 1.21204 1.00250 0.99530 0.93124 1.21083 0.97876 0.96548 0.96104 1.23558 0.95496 0.94034 1.04823 1.21354 1.01525 0.94023 1.01165 1.16923 0.95669 0.88941 0.87744 1.91593 1.76374 1.79017 1.63050 1.21228 0.99700 1.01321 0.92920 0.76530 0.89185 1.17882 1.17490 0.83149 0.87978 0.87469 0.91896 0.91920 0.85892 0.85740 0.85817 0.85733 0.85882 0.86822 0.88346 0.82293 0.83054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.53 0.17 12.81 -35.23 -0.45 -0.28 16 2 C -0.08 0.13 2.79 36.01 0.10 0.23 16 3 Si 0.69 -1.81 29.85 -169.99 -5.07 -6.88 16 4 C -0.03 0.01 5.38 -104.65 -0.56 -0.56 16 5 C -0.07 -0.08 8.68 -39.43 -0.34 -0.42 16 6 C 0.10 0.11 4.64 -39.22 -0.18 -0.07 16 7 O -0.66 -1.33 10.05 -51.74 -0.52 -1.85 16 8 S 2.59 4.45 5.15 -107.50 -0.55 3.90 16 9 O -0.92 -5.18 18.09 -67.04 -1.21 -6.40 16 10 O -0.94 -2.44 15.58 -67.04 -1.04 -3.48 16 11 C -0.64 0.76 3.90 -25.91 -0.10 0.66 16 12 H 0.16 -0.32 8.14 -51.93 -0.42 -0.74 16 13 C -0.11 0.19 7.50 -25.91 -0.19 0.00 16 14 C 0.08 -0.16 4.37 -25.91 -0.11 -0.27 16 15 H 0.09 -0.34 7.87 -51.93 -0.41 -0.75 16 16 O -0.36 -0.02 10.26 -35.23 -0.36 -0.38 16 17 C 0.10 -0.11 5.90 36.01 0.21 0.10 16 18 C -0.10 -0.05 5.51 -104.62 -0.58 -0.63 16 19 C -0.10 -0.04 9.70 -39.58 -0.38 -0.43 16 20 C -0.12 -0.04 10.05 -39.58 -0.40 -0.44 16 21 C -0.11 -0.04 10.05 -39.58 -0.40 -0.44 16 22 C -0.12 -0.05 10.05 -39.58 -0.40 -0.44 16 23 C -0.10 -0.05 9.70 -39.58 -0.38 -0.43 16 24 C -0.14 0.33 5.14 -25.91 -0.13 0.19 16 25 C -0.16 0.11 6.67 -39.37 -0.26 -0.16 16 26 C 0.13 -0.10 7.30 -39.44 -0.29 -0.38 16 27 F -0.12 0.05 17.27 2.25 0.04 0.09 16 28 C -0.13 0.15 8.64 -39.49 -0.34 -0.19 16 29 H 0.39 -1.67 8.74 45.56 0.40 -1.27 16 30 H 0.09 -0.30 7.96 -51.93 -0.41 -0.72 16 31 H -0.25 0.14 7.11 56.52 0.40 0.54 16 32 H -0.25 -0.06 7.05 56.52 0.40 0.34 16 33 H 0.15 0.13 8.06 -52.49 -0.42 -0.29 16 34 H 0.10 -0.17 8.14 -51.93 -0.42 -0.60 16 35 H 0.11 -0.35 8.10 -51.93 -0.42 -0.77 16 36 H 0.06 -0.14 8.09 -51.93 -0.42 -0.56 16 37 H 0.06 -0.15 8.08 -51.92 -0.42 -0.57 16 38 H 0.12 -0.13 8.06 -52.49 -0.42 -0.55 16 39 H 0.12 -0.17 8.06 -52.49 -0.42 -0.59 16 40 H 0.12 -0.17 8.06 -52.49 -0.42 -0.59 16 41 H 0.12 -0.16 8.06 -52.49 -0.42 -0.59 16 42 H 0.12 -0.12 8.06 -52.49 -0.42 -0.54 16 43 H 0.11 -0.37 7.53 -51.93 -0.39 -0.76 16 44 H 0.10 -0.29 5.93 -51.93 -0.31 -0.60 16 45 H 0.16 -0.42 6.52 -52.48 -0.34 -0.76 16 46 H 0.15 -0.45 4.86 -52.49 -0.26 -0.71 16 LS Contribution 397.49 15.07 5.99 5.99 Total: 0.00 -10.55 397.49 -13.50 -24.04 By element: Atomic # 1 Polarization: -5.50 SS G_CDS: -5.56 Total: -11.07 kcal Atomic # 6 Polarization: 1.06 SS G_CDS: -4.75 Total: -3.68 kcal Atomic # 8 Polarization: -8.79 SS G_CDS: -3.59 Total: -12.38 kcal Atomic # 9 Polarization: 0.05 SS G_CDS: 0.04 Total: 0.09 kcal Atomic # 14 Polarization: -1.81 SS G_CDS: -5.07 Total: -6.88 kcal Atomic # 16 Polarization: 4.45 SS G_CDS: -0.55 Total: 3.90 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -10.55 -13.50 -24.04 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_8925532_15608174.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.506 kcal (2) G-P(sol) polarization free energy of solvation -10.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.042 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds