Wall clock time and date at job start Mon Mar 8 2021 12:22:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42905 * 1 3 3 Si 1.86298 * 109.46822 * 2 1 4 4 C 1.50703 * 109.46852 * 119.99799 * 2 1 3 5 5 C 1.38131 * 119.96214 * 65.00769 * 4 2 1 6 6 C 1.38767 * 119.99451 * 180.27619 * 5 4 2 7 7 O 1.35897 * 120.04078 * 179.69890 * 6 5 4 8 8 S 1.52201 * 113.99828 * 90.00285 * 7 6 5 9 9 O 1.42104 * 104.27758 * 191.07010 * 8 7 6 10 10 O 1.42103 * 104.27416 * 318.92621 * 8 7 6 11 11 C 1.81394 * 104.45206 * 74.99910 * 8 7 6 12 12 H 1.08998 * 112.85310 * 53.80615 * 11 8 7 13 13 C 1.53784 * 113.61311 * 185.00231 * 11 8 7 14 14 C 1.53786 * 87.08106 * 139.98141 * 13 11 8 15 15 H 1.09000 * 113.60855 * 220.01787 * 14 13 11 16 16 O 1.42900 * 113.61568 * 89.19951 * 14 13 11 17 17 C 1.42896 * 113.99719 * 149.99921 * 16 14 13 18 18 C 1.50702 * 109.46766 * 179.97438 * 17 16 14 19 19 C 1.38239 * 119.99969 * 269.72330 * 18 17 16 20 20 C 1.38232 * 119.99917 * 179.78665 * 19 18 17 21 21 C 1.38241 * 120.00096 * 0.45112 * 20 19 18 22 22 C 1.38240 * 119.99483 * 359.80701 * 21 20 19 23 23 C 1.38230 * 119.99734 * 90.00487 * 18 17 16 24 24 C 1.53785 * 87.08027 * 334.56421 * 14 13 11 25 25 C 1.38677 * 119.91299 * 359.43983 * 6 5 4 26 26 C 1.38375 * 119.91957 * 0.53812 * 25 6 5 27 27 F 1.35100 * 119.99723 * 179.72425 * 26 25 6 28 28 C 1.38253 * 119.95568 * 244.97953 * 4 2 1 29 29 H 0.96699 * 114.00057 * 60.00239 * 1 2 3 30 30 H 1.08993 * 109.47502 * 239.99860 * 2 1 3 31 31 H 1.48498 * 110.00217 * 298.67865 * 3 2 1 32 32 H 1.48504 * 110.00305 * 60.00016 * 3 2 1 33 33 H 1.08002 * 119.99873 * 359.97438 * 5 4 2 34 34 H 1.09003 * 113.61340 * 254.52746 * 13 11 8 35 35 H 1.08996 * 113.61635 * 25.43389 * 13 11 8 36 36 H 1.08996 * 109.47451 * 300.00115 * 17 16 14 37 37 H 1.09007 * 109.47374 * 59.99981 * 17 16 14 38 38 H 1.07998 * 119.99741 * 0.02562 * 19 18 17 39 39 H 1.07998 * 120.00551 * 180.27224 * 20 19 18 40 40 H 1.07994 * 120.00274 * 179.83125 * 21 20 19 41 41 H 1.07999 * 119.99558 * 180.02562 * 22 21 20 42 42 H 1.07993 * 120.00321 * 359.97377 * 23 18 17 43 43 H 1.08996 * 113.61465 * 270.88683 * 24 14 13 44 44 H 1.08999 * 113.61302 * 139.98237 * 24 14 13 45 45 H 1.08006 * 120.03619 * 180.27985 * 25 6 5 46 46 H 1.08002 * 119.96443 * 359.97438 * 28 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0499 1.7565 0.0000 4 6 1.9313 -0.7104 1.2305 5 6 1.6846 -2.0592 1.3975 6 6 2.1418 -2.7127 2.5330 7 8 1.8942 -4.0384 2.7011 8 16 2.9700 -4.9471 2.1237 9 8 2.3945 -6.2455 2.1710 10 8 3.3117 -4.3418 0.8842 11 6 4.3482 -4.8187 3.2961 12 1 4.0525 -5.0359 4.3225 13 6 5.6115 -5.5716 2.8466 14 6 6.4189 -4.3790 3.3859 15 1 7.2623 -4.1013 2.7538 16 8 6.7760 -4.5056 4.7638 17 6 8.0003 -3.8546 5.1090 18 6 8.2770 -4.0512 6.5773 19 6 7.8051 -3.1347 7.4984 20 6 8.0552 -3.3174 8.8456 21 6 8.7850 -4.4117 9.2710 22 6 9.2614 -5.3253 8.3493 23 6 9.0076 -5.1450 7.0025 24 6 5.1634 -3.5230 3.1490 25 6 2.8562 -2.0126 3.4934 26 6 3.1018 -0.6616 3.3224 27 9 3.7929 0.0233 4.2597 28 6 2.6391 -0.0114 2.1907 29 1 -0.3933 0.4417 -0.7651 30 1 1.7924 -0.5138 -0.8899 31 1 1.5879 2.4586 -1.2242 32 1 1.5614 2.4680 1.2085 33 1 1.1316 -2.6040 0.6466 34 1 5.7848 -6.4989 3.3928 35 1 5.6847 -5.6956 1.7662 36 1 8.8158 -4.2810 4.5249 37 1 7.9183 -2.7890 4.8946 38 1 7.2379 -2.2780 7.1657 39 1 7.6828 -2.6038 9.5656 40 1 8.9827 -4.5530 10.3232 41 1 9.8313 -6.1804 8.6817 42 1 9.3797 -5.8587 6.2826 43 1 5.1141 -3.0870 2.1513 44 1 4.9749 -2.7964 3.9393 45 1 3.2170 -2.5203 4.3758 46 1 2.8317 1.0430 2.0578 There are 69 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 69 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_8925532_15608174.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 12:22:01 Heat of formation + Delta-G solvation = -118.171367 kcal Electronic energy + Delta-G solvation = -35252.548077 eV Core-core repulsion = 30311.404395 eV Total energy + Delta-G solvation = -4941.143682 eV No. of doubly occupied orbitals = 69 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 395.101 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -50.11660 -42.41582 -40.77614 -39.96217 -39.74643 -38.50433 -37.61873 -37.39259 -37.02318 -32.99200 -32.66320 -31.81087 -31.54558 -27.78511 -27.30147 -26.82142 -26.41279 -25.04062 -23.50419 -23.21063 -22.28444 -21.79701 -20.98166 -19.77187 -19.11325 -18.91825 -18.63896 -18.14680 -18.03689 -17.66570 -17.45488 -17.20146 -16.77721 -16.62362 -16.52353 -16.29744 -15.88935 -15.74415 -15.47895 -15.32707 -15.21103 -14.78397 -14.42286 -14.30329 -14.22028 -14.11327 -13.93427 -13.79302 -13.66777 -13.54927 -13.51492 -13.42897 -13.32744 -13.24041 -13.17522 -13.07923 -12.35369 -12.07667 -12.06314 -11.93556 -11.85005 -11.73392 -11.23988 -10.67401 -10.55838 -10.24016 -10.01288 -9.84689 -9.78631 -4.93293 -1.22128 -0.34397 -0.23237 0.30969 0.47600 0.80261 1.23090 1.60510 1.92816 1.96936 2.34355 2.42327 2.61452 2.81517 2.96435 3.11983 3.15623 3.23669 3.42622 3.47902 3.53321 3.65352 3.75061 3.82999 3.87248 3.91795 3.94776 4.13406 4.24136 4.28400 4.29439 4.35883 4.43576 4.47938 4.49297 4.54543 4.60529 4.65002 4.68065 4.74554 4.75256 4.79827 4.84602 4.90108 4.98033 5.06733 5.13278 5.44309 5.52900 5.60228 5.63028 6.07126 6.21103 6.53941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.557 6.557 2 C -0.095 4.095 3 Si 0.772 3.228 4 C -0.033 4.033 5 C -0.089 4.089 6 C 0.081 3.919 7 O -0.668 6.668 8 S 2.594 3.406 9 O -0.971 6.971 10 O -0.958 6.958 11 C -0.619 4.619 12 H 0.171 0.829 13 C -0.117 4.117 14 C 0.081 3.919 15 H 0.113 0.887 16 O -0.374 6.374 17 C 0.100 3.900 18 C -0.107 4.107 19 C -0.110 4.110 20 C -0.136 4.136 21 C -0.126 4.126 22 C -0.136 4.136 23 C -0.112 4.112 24 C -0.140 4.140 25 C -0.155 4.155 26 C 0.128 3.872 27 F -0.121 7.121 28 C -0.128 4.128 29 H 0.401 0.599 30 H 0.108 0.892 31 H -0.281 1.281 32 H -0.288 1.288 33 H 0.143 0.857 34 H 0.100 0.900 35 H 0.121 0.879 36 H 0.074 0.926 37 H 0.077 0.923 38 H 0.135 0.865 39 H 0.137 0.863 40 H 0.136 0.864 41 H 0.136 0.864 42 H 0.133 0.867 43 H 0.125 0.875 44 H 0.108 0.892 45 H 0.178 0.822 46 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.827 5.270 -1.074 8.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.368 6.368 2 C -0.203 4.203 3 Si 0.675 3.325 4 C -0.033 4.033 5 C -0.109 4.109 6 C 0.040 3.960 7 O -0.627 6.627 8 S 2.695 3.305 9 O -0.969 6.969 10 O -0.956 6.956 11 C -0.730 4.730 12 H 0.188 0.812 13 C -0.156 4.156 14 C 0.021 3.979 15 H 0.131 0.869 16 O -0.293 6.293 17 C 0.025 3.975 18 C -0.107 4.107 19 C -0.128 4.128 20 C -0.153 4.153 21 C -0.144 4.144 22 C -0.154 4.154 23 C -0.130 4.130 24 C -0.178 4.178 25 C -0.175 4.175 26 C 0.109 3.891 27 F -0.100 7.100 28 C -0.147 4.147 29 H 0.252 0.748 30 H 0.125 0.875 31 H -0.208 1.208 32 H -0.215 1.215 33 H 0.161 0.839 34 H 0.119 0.881 35 H 0.139 0.861 36 H 0.093 0.907 37 H 0.095 0.905 38 H 0.153 0.847 39 H 0.155 0.845 40 H 0.154 0.846 41 H 0.154 0.846 42 H 0.151 0.849 43 H 0.143 0.857 44 H 0.127 0.873 45 H 0.195 0.805 46 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 6.010 5.380 -0.847 8.110 hybrid contribution -1.048 -0.520 0.243 1.195 sum 4.962 4.860 -0.604 6.972 Atomic orbital electron populations 1.86533 1.17889 1.80970 1.51385 1.25151 0.84708 1.12677 0.97726 0.94082 0.89959 0.71127 0.77325 1.19078 0.96463 0.92067 0.95718 1.21338 0.98073 0.95129 0.96391 1.17718 1.02959 0.78485 0.96873 1.85710 1.66064 1.25091 1.85836 1.05516 0.75591 0.73362 0.76079 1.93595 1.75825 1.40003 1.87489 1.93619 1.84188 1.75406 1.42394 1.32058 1.13875 1.09198 1.17825 0.81178 1.23084 0.89813 0.99625 1.03046 1.22880 0.96667 0.94815 0.83508 0.86930 1.87951 1.40838 1.75514 1.25039 1.21530 0.86591 0.98063 0.91337 1.19826 0.99550 0.96150 0.95190 1.21331 0.98821 0.99515 0.93178 1.21469 0.99067 0.98525 0.96279 1.21531 0.97499 0.94646 1.00681 1.21460 1.00496 1.00061 0.93351 1.21328 0.98187 0.97024 0.96483 1.23696 0.94684 0.93556 1.05883 1.21487 1.00736 0.94102 1.01179 1.16928 0.95588 0.88852 0.87773 1.91599 1.76351 1.78969 1.63057 1.21429 0.98819 1.02079 0.92405 0.74814 0.87454 1.20810 1.21534 0.83936 0.88150 0.86051 0.90737 0.90527 0.84686 0.84508 0.84610 0.84590 0.84926 0.85712 0.87349 0.80512 0.81321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 0.20 12.81 -148.98 -1.91 -1.71 16 2 C -0.09 0.34 2.79 71.24 0.20 0.54 16 3 Si 0.77 -4.59 29.85 68.60 2.05 -2.54 16 4 C -0.03 0.02 5.38 -19.89 -0.11 -0.09 16 5 C -0.09 -0.28 8.68 22.37 0.19 -0.08 16 6 C 0.08 0.23 4.64 22.50 0.10 0.33 16 7 O -0.67 -3.64 10.05 -61.48 -0.62 -4.26 16 8 S 2.59 12.14 5.15 -56.49 -0.29 11.85 16 9 O -0.97 -13.17 18.09 -118.57 -2.15 -15.32 16 10 O -0.96 -5.96 15.58 -118.57 -1.85 -7.80 16 11 C -0.62 1.62 3.90 31.12 0.12 1.74 16 12 H 0.17 -0.71 8.14 -2.39 -0.02 -0.73 16 13 C -0.12 0.48 7.50 31.12 0.23 0.72 16 14 C 0.08 -0.45 4.37 31.12 0.14 -0.31 16 15 H 0.11 -1.12 7.87 -2.39 -0.02 -1.14 16 16 O -0.37 0.46 10.26 -148.98 -1.53 -1.07 16 17 C 0.10 -0.35 5.90 71.24 0.42 0.07 16 18 C -0.11 -0.06 5.51 -19.87 -0.11 -0.17 16 19 C -0.11 -0.05 9.70 22.27 0.22 0.16 16 20 C -0.14 -0.08 10.05 22.27 0.22 0.14 16 21 C -0.13 -0.09 10.05 22.27 0.22 0.13 16 22 C -0.14 -0.12 10.05 22.27 0.22 0.10 16 23 C -0.11 -0.11 9.70 22.27 0.22 0.11 16 24 C -0.14 0.85 5.14 31.12 0.16 1.01 16 25 C -0.15 0.29 6.67 22.41 0.15 0.44 16 26 C 0.13 -0.32 7.30 22.36 0.16 -0.16 16 27 F -0.12 0.27 17.27 44.97 0.78 1.05 16 28 C -0.13 0.39 8.64 22.33 0.19 0.59 16 29 H 0.40 -3.38 8.74 -74.06 -0.65 -4.03 16 30 H 0.11 -0.78 7.96 -2.39 -0.02 -0.80 16 31 H -0.28 0.41 7.11 99.48 0.71 1.12 16 32 H -0.29 -0.10 7.05 99.48 0.70 0.60 16 33 H 0.14 0.53 8.06 -2.91 -0.02 0.51 16 34 H 0.10 -0.36 8.14 -2.39 -0.02 -0.38 16 35 H 0.12 -0.87 8.10 -2.39 -0.02 -0.89 16 36 H 0.07 -0.46 8.09 -2.39 -0.02 -0.48 16 37 H 0.08 -0.50 8.08 -2.38 -0.02 -0.52 16 38 H 0.14 -0.40 8.06 -2.91 -0.02 -0.42 16 39 H 0.14 -0.40 8.06 -2.91 -0.02 -0.43 16 40 H 0.14 -0.38 8.06 -2.91 -0.02 -0.40 16 41 H 0.14 -0.35 8.06 -2.91 -0.02 -0.37 16 42 H 0.13 -0.27 8.06 -2.91 -0.02 -0.30 16 43 H 0.12 -1.00 7.53 -2.39 -0.02 -1.01 16 44 H 0.11 -0.85 5.93 -2.39 -0.01 -0.86 16 45 H 0.18 -1.11 6.52 -2.91 -0.02 -1.13 16 46 H 0.17 -1.22 4.86 -2.91 -0.01 -1.23 16 Total: 0.00 -25.30 397.49 -2.13 -27.44 By element: Atomic # 1 Polarization: -13.32 SS G_CDS: 0.42 Total: -12.90 kcal Atomic # 6 Polarization: 2.30 SS G_CDS: 2.96 Total: 5.26 kcal Atomic # 8 Polarization: -22.11 SS G_CDS: -8.05 Total: -30.16 kcal Atomic # 9 Polarization: 0.27 SS G_CDS: 0.78 Total: 1.05 kcal Atomic # 14 Polarization: -4.59 SS G_CDS: 2.05 Total: -2.54 kcal Atomic # 16 Polarization: 12.14 SS G_CDS: -0.29 Total: 11.85 kcal Total: -25.30 -2.13 -27.44 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_8925532_15608174.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.734 kcal (2) G-P(sol) polarization free energy of solvation -25.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -27.438 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds