Wall clock time and date at job start Mon Mar 8 2021 12:30:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.45208 * 109.46666 * 2 1 4 4 C 1.34232 * 116.99618 * 180.02562 * 3 2 1 5 5 O 1.20826 * 120.00236 * 359.97438 * 4 3 2 6 6 C 1.50697 * 120.00079 * 180.02562 * 4 3 2 7 7 H 1.08998 * 109.46862 * 300.00390 * 6 4 3 8 8 C 1.53006 * 109.47239 * 59.99547 * 6 4 3 9 9 C 1.52997 * 109.47164 * 180.02562 * 8 6 4 10 10 C 1.53002 * 109.46978 * 299.99874 * 9 8 6 11 11 F 1.39902 * 109.46894 * 179.97438 * 10 9 8 12 12 C 1.52993 * 109.47392 * 299.99957 * 10 9 8 13 13 S 1.81400 * 109.47353 * 305.00254 * 12 10 9 14 14 O 1.42098 * 110.54140 * 291.62383 * 13 12 10 15 15 O 1.42100 * 110.54383 * 68.37428 * 13 12 10 16 16 O 1.52197 * 104.44888 * 179.97438 * 13 12 10 17 17 C 1.35895 * 114.00401 * 74.99720 * 16 13 12 18 18 C 1.38672 * 120.04102 * 89.99800 * 17 16 13 19 19 C 1.38388 * 119.92229 * 179.97438 * 18 17 16 20 20 F 1.35096 * 119.99998 * 179.97438 * 19 18 17 21 21 C 1.38475 * 120.00063 * 0.02562 * 19 18 17 22 22 C 1.38254 * 120.08752 * 359.97438 * 21 19 18 23 23 C 1.50702 * 119.95613 * 180.02562 * 22 21 19 24 24 O 1.42900 * 109.46558 * 244.99412 * 23 22 21 25 25 Si 1.86292 * 109.47466 * 4.99281 * 23 22 21 26 26 C 1.38136 * 120.07938 * 359.73943 * 22 21 19 27 27 C 1.52996 * 109.46891 * 60.00410 * 10 9 8 28 28 C 1.52997 * 109.47466 * 179.97438 * 6 4 3 29 29 H 1.09003 * 109.46618 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.46939 * 299.99720 * 1 2 3 31 31 H 1.08992 * 109.47077 * 59.99823 * 1 2 3 32 32 H 1.08998 * 109.46939 * 240.00280 * 2 1 3 33 33 H 1.08996 * 109.47314 * 119.99461 * 2 1 3 34 34 H 1.09001 * 109.47002 * 60.00070 * 8 6 4 35 35 H 1.09000 * 109.47050 * 300.00336 * 8 6 4 36 36 H 1.09002 * 109.47045 * 180.02562 * 9 8 6 37 37 H 1.09001 * 109.47375 * 59.99966 * 9 8 6 38 38 H 1.09005 * 109.46770 * 65.00196 * 12 10 9 39 39 H 1.08999 * 109.47318 * 184.99883 * 12 10 9 40 40 H 1.08002 * 120.03962 * 359.95480 * 18 17 16 41 41 H 1.08005 * 119.95178 * 179.97438 * 21 19 18 42 42 H 1.08998 * 109.47030 * 125.00107 * 23 22 21 43 43 H 0.96694 * 114.00359 * 60.00291 * 24 23 22 44 44 H 1.48495 * 110.00067 * 180.02562 * 25 23 22 45 45 H 1.48497 * 110.00525 * 301.32322 * 25 23 22 46 46 H 1.07999 * 120.00018 * 180.28214 * 26 22 21 47 47 H 1.09004 * 109.47368 * 179.97438 * 27 10 9 48 48 H 1.09001 * 109.47372 * 59.99964 * 27 10 9 49 49 H 1.09002 * 109.47153 * 59.99773 * 28 6 4 50 50 H 1.09001 * 109.46832 * 299.99964 * 28 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3691 0.0000 4 6 3.3447 1.5450 -0.0005 5 8 4.0808 0.5868 -0.0005 6 6 3.9207 2.9375 0.0000 7 1 3.5843 3.4702 -0.8895 8 6 3.4497 3.6838 1.2499 9 6 4.0339 5.0978 1.2501 10 6 5.5619 5.0183 1.2492 11 9 6.0961 6.3113 1.2488 12 6 6.0345 4.2710 2.4977 13 16 5.3528 5.0716 3.9759 14 8 5.9344 6.3549 4.1610 15 8 3.9449 4.8897 4.0371 16 8 5.8884 4.2453 5.1364 17 6 7.2013 4.4636 5.4110 18 6 7.5669 5.4497 6.3148 19 6 8.9045 5.6695 6.5930 20 9 9.2625 6.6302 7.4728 21 6 9.8762 4.9055 5.9688 22 6 9.5120 3.9223 5.0677 23 6 10.5719 3.0922 4.3905 24 8 10.5583 3.3560 2.9861 25 14 12.2430 3.5290 5.0883 26 6 8.1775 3.6959 4.7919 27 6 6.0329 4.2721 -0.0007 28 6 5.4486 2.8575 -0.0001 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5137 0.8900 34 1 3.7860 3.1512 2.1395 35 1 2.3611 3.7408 1.2504 36 1 3.6987 5.6293 2.1408 37 1 3.6973 5.6303 0.3606 38 1 5.6919 3.2371 2.4538 39 1 7.1234 4.2913 2.5430 40 1 6.8085 6.0457 6.8008 41 1 10.9200 5.0780 6.1862 42 1 10.3709 2.0349 4.5634 43 1 10.7302 4.2798 2.7578 44 1 13.2970 2.7176 4.4281 45 1 12.5153 4.9749 4.8871 46 1 7.8942 2.9245 4.0912 47 1 7.1214 4.2157 -0.0017 48 1 5.6962 4.8045 -0.8903 49 1 5.7845 2.3257 -0.8903 50 1 5.7846 2.3250 0.8896 There are 75 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 75 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_8925532_16464696.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 12:30:54 Heat of formation + Delta-G solvation = -277.944086 kcal Electronic energy + Delta-G solvation = -41476.967781 eV Core-core repulsion = 35814.362850 eV Total energy + Delta-G solvation = -5662.604931 eV No. of doubly occupied orbitals = 75 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 421.123 amu Computer time = 1.41 seconds Orbital eigenvalues (eV) -50.18409 -49.06855 -42.50178 -41.87099 -39.94820 -39.64491 -38.58649 -37.70226 -37.57720 -37.48375 -33.60387 -32.84491 -32.50935 -32.10700 -31.64766 -29.31417 -27.28001 -25.45680 -25.08957 -24.19487 -23.63667 -23.44934 -22.03794 -21.74370 -20.50475 -19.76304 -19.25057 -19.02714 -18.78897 -18.39773 -18.00605 -17.78025 -17.72835 -17.63878 -17.37932 -17.09404 -16.91741 -16.74630 -16.23741 -16.15189 -16.11169 -15.68940 -15.44541 -15.34154 -15.08841 -14.95370 -14.49746 -14.43383 -14.29486 -14.16492 -14.05505 -13.82882 -13.70530 -13.59303 -13.53347 -13.37031 -13.31700 -13.27278 -13.17898 -13.08491 -12.91474 -12.81417 -12.71340 -12.51115 -12.29860 -12.28588 -11.99657 -11.89564 -11.63518 -11.52767 -11.41416 -11.17470 -10.77403 -10.41202 -10.13684 -4.91604 -1.41775 -0.39366 -0.34623 0.68255 1.06646 1.24289 1.59706 1.60300 1.89697 1.98852 2.20151 2.54168 2.77792 2.80576 3.05619 3.09101 3.15607 3.29521 3.37025 3.43259 3.48160 3.55336 3.63947 3.70337 3.77485 3.80152 3.91984 3.97440 4.01392 4.03339 4.16452 4.19362 4.27323 4.28167 4.31559 4.51216 4.52226 4.54941 4.61539 4.63755 4.69025 4.74955 4.81294 4.83843 4.86638 4.88966 4.91093 4.99177 5.09765 5.13056 5.21505 5.37098 5.43580 6.44650 6.63231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.054 3.946 3 O -0.361 6.361 4 C 0.465 3.535 5 O -0.535 6.535 6 C -0.082 4.082 7 H 0.140 0.860 8 C -0.109 4.109 9 C -0.175 4.175 10 C 0.135 3.865 11 F -0.205 7.205 12 C -0.678 4.678 13 S 2.585 3.415 14 O -0.965 6.965 15 O -0.940 6.940 16 O -0.661 6.661 17 C 0.074 3.926 18 C -0.142 4.142 19 C 0.121 3.879 20 F -0.129 7.129 21 C -0.126 4.126 22 C -0.063 4.063 23 C -0.075 4.075 24 O -0.537 6.537 25 Si 0.755 3.245 26 C -0.110 4.110 27 C -0.120 4.120 28 C -0.106 4.106 29 H 0.095 0.905 30 H 0.067 0.933 31 H 0.069 0.931 32 H 0.070 0.930 33 H 0.068 0.932 34 H 0.070 0.930 35 H 0.099 0.901 36 H 0.077 0.923 37 H 0.122 0.878 38 H 0.184 0.816 39 H 0.177 0.823 40 H 0.151 0.849 41 H 0.172 0.828 42 H 0.149 0.851 43 H 0.390 0.610 44 H -0.297 1.297 45 H -0.278 1.278 46 H 0.178 0.822 47 H 0.102 0.898 48 H 0.103 0.897 49 H 0.090 0.910 50 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.273 -3.650 -1.684 4.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.020 4.020 3 O -0.277 6.277 4 C 0.310 3.690 5 O -0.424 6.424 6 C -0.101 4.101 7 H 0.158 0.842 8 C -0.146 4.146 9 C -0.213 4.213 10 C 0.115 3.885 11 F -0.185 7.185 12 C -0.807 4.807 13 S 2.684 3.316 14 O -0.963 6.963 15 O -0.938 6.938 16 O -0.620 6.620 17 C 0.033 3.967 18 C -0.163 4.163 19 C 0.101 3.899 20 F -0.107 7.107 21 C -0.145 4.145 22 C -0.064 4.064 23 C -0.184 4.184 24 O -0.345 6.345 25 Si 0.660 3.340 26 C -0.130 4.130 27 C -0.158 4.158 28 C -0.144 4.144 29 H 0.114 0.886 30 H 0.086 0.914 31 H 0.088 0.912 32 H 0.088 0.912 33 H 0.086 0.914 34 H 0.088 0.912 35 H 0.118 0.882 36 H 0.095 0.905 37 H 0.140 0.860 38 H 0.202 0.798 39 H 0.195 0.805 40 H 0.169 0.831 41 H 0.189 0.811 42 H 0.167 0.833 43 H 0.240 0.760 44 H -0.224 1.224 45 H -0.204 1.204 46 H 0.196 0.804 47 H 0.121 0.879 48 H 0.122 0.878 49 H 0.109 0.891 50 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 2.609 -3.890 -1.291 4.858 hybrid contribution -0.406 0.549 -0.880 1.114 sum 2.203 -3.341 -2.172 4.553 Atomic orbital electron populations 1.21832 0.90922 1.04213 1.03713 1.23251 0.96799 0.79353 1.02559 1.86523 1.24349 1.33456 1.83396 1.24139 0.80616 0.93072 0.71221 1.90674 1.60978 1.44203 1.46552 1.21332 0.96941 0.88739 1.03075 0.84205 1.21519 1.03327 0.93564 0.96196 1.22682 0.92131 0.99612 1.06872 1.20650 0.94036 0.78359 0.95457 1.92973 1.87923 1.40115 1.97525 1.31593 1.17100 1.16278 1.15712 1.05708 0.75126 0.74488 0.76296 1.93658 1.78446 1.40947 1.83259 1.93640 1.29104 1.85707 1.85336 1.85736 1.31881 1.78001 1.66399 1.17881 0.77676 0.99337 1.01838 1.21436 0.97021 0.98631 0.99202 1.17229 0.91818 0.89275 0.91562 1.91578 1.92204 1.60921 1.66018 1.21558 1.00932 0.95296 0.96723 1.20093 0.94359 0.95835 0.96081 1.25213 1.05072 1.04071 0.84055 1.86619 1.93128 1.34262 1.20508 0.94032 0.72748 0.77881 0.89359 1.21564 0.91240 0.99510 1.00667 1.22055 1.03315 0.94959 0.95487 1.21544 0.91174 0.96543 1.05124 0.88627 0.91394 0.91204 0.91198 0.91379 0.91157 0.88212 0.90471 0.86000 0.79849 0.80519 0.83109 0.81091 0.83348 0.75966 1.22415 1.20412 0.80448 0.87949 0.87822 0.89149 0.90175 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.55 10.29 71.98 0.74 1.29 16 2 C 0.05 0.01 6.19 71.98 0.45 0.46 16 3 O -0.36 -0.83 10.12 -51.44 -0.52 -1.35 16 4 C 0.47 1.02 7.26 71.23 0.52 1.54 16 5 O -0.53 -4.08 15.73 21.97 0.35 -3.73 16 6 C -0.08 0.34 2.63 -11.54 -0.03 0.31 16 7 H 0.14 -1.19 8.14 -2.39 -0.02 -1.21 16 8 C -0.11 0.29 4.56 30.60 0.14 0.43 16 9 C -0.18 0.35 4.62 30.59 0.14 0.49 16 10 C 0.13 -0.34 1.11 -10.80 -0.01 -0.35 16 11 F -0.20 -0.60 16.37 44.97 0.74 0.13 16 12 C -0.68 2.68 4.08 71.98 0.29 2.98 16 13 S 2.59 11.80 4.41 -56.49 -0.25 11.55 16 14 O -0.96 -9.85 15.97 -118.57 -1.89 -11.75 16 15 O -0.94 -8.62 14.90 -118.57 -1.77 -10.39 16 16 O -0.66 -2.30 10.05 -61.46 -0.62 -2.92 16 17 C 0.07 0.12 4.79 22.50 0.11 0.23 16 18 C -0.14 -0.45 9.03 22.41 0.20 -0.25 16 19 C 0.12 0.09 7.30 22.36 0.16 0.25 16 20 F -0.13 -0.38 17.27 44.97 0.78 0.39 16 21 C -0.13 0.57 8.64 22.33 0.19 0.76 16 22 C -0.06 0.39 5.35 -19.88 -0.11 0.28 16 23 C -0.07 0.63 2.80 71.24 0.20 0.83 16 24 O -0.54 3.32 12.84 -148.98 -1.91 1.41 16 25 Si 0.75 -5.61 29.88 68.60 2.05 -3.56 16 26 C -0.11 0.49 8.10 22.37 0.18 0.67 16 27 C -0.12 0.85 5.19 30.61 0.16 1.01 16 28 C -0.11 0.61 4.22 30.61 0.13 0.74 16 29 H 0.10 -0.62 8.14 -2.39 -0.02 -0.64 16 30 H 0.07 -0.22 8.14 -2.39 -0.02 -0.24 16 31 H 0.07 -0.26 8.14 -2.39 -0.02 -0.28 16 32 H 0.07 0.02 8.13 -2.39 -0.02 0.00 16 33 H 0.07 0.04 8.13 -2.39 -0.02 0.03 16 34 H 0.07 -0.15 6.06 -2.39 -0.01 -0.16 16 35 H 0.10 -0.28 8.11 -2.39 -0.02 -0.30 16 36 H 0.08 0.15 5.40 -2.39 -0.01 0.13 16 37 H 0.12 -0.74 8.14 -2.39 -0.02 -0.76 16 38 H 0.18 -1.58 4.82 -2.39 -0.01 -1.59 16 39 H 0.18 -1.57 6.63 -2.39 -0.02 -1.59 16 40 H 0.15 0.51 8.06 -2.91 -0.02 0.49 16 41 H 0.17 -1.49 4.84 -2.91 -0.01 -1.50 16 42 H 0.15 -1.73 7.96 -2.39 -0.02 -1.75 16 43 H 0.39 -4.35 8.70 -74.06 -0.64 -4.99 16 44 H -0.30 -0.22 7.11 99.48 0.71 0.48 16 45 H -0.28 0.95 7.01 99.48 0.70 1.65 16 46 H 0.18 -1.80 7.53 -2.91 -0.02 -1.82 16 47 H 0.10 -0.91 8.14 -2.39 -0.02 -0.93 16 48 H 0.10 -0.95 8.14 -2.39 -0.02 -0.97 16 49 H 0.09 -0.48 8.10 -2.39 -0.02 -0.50 16 50 H 0.08 -0.46 6.28 -2.39 -0.01 -0.48 16 Total: 0.00 -26.26 413.53 0.81 -25.45 By element: Atomic # 1 Polarization: -17.31 SS G_CDS: 0.40 Total: -16.91 kcal Atomic # 6 Polarization: 8.20 SS G_CDS: 3.46 Total: 11.67 kcal Atomic # 8 Polarization: -22.36 SS G_CDS: -6.37 Total: -28.73 kcal Atomic # 9 Polarization: -0.99 SS G_CDS: 1.51 Total: 0.53 kcal Atomic # 14 Polarization: -5.61 SS G_CDS: 2.05 Total: -3.56 kcal Atomic # 16 Polarization: 11.80 SS G_CDS: -0.25 Total: 11.55 kcal Total: -26.26 0.81 -25.45 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_8925532_16464696.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -252.490 kcal (2) G-P(sol) polarization free energy of solvation -26.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -278.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -25.454 kcal (6) G-S(sol) free energy of system = (1) + (5) -277.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.41 seconds