Wall clock time and date at job start Mon Mar 8 2021 12:30:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.45208 * 109.46666 * 2 1 4 4 C 1.34232 * 116.99618 * 180.02562 * 3 2 1 5 5 O 1.20826 * 120.00236 * 359.97438 * 4 3 2 6 6 C 1.50697 * 120.00079 * 180.02562 * 4 3 2 7 7 H 1.09002 * 109.47120 * 59.99588 * 6 4 3 8 8 C 1.52997 * 109.47466 * 179.97438 * 6 4 3 9 9 C 1.53000 * 109.47060 * 180.02562 * 8 6 4 10 10 C 1.53002 * 109.47233 * 299.99657 * 9 8 6 11 11 F 1.39905 * 109.47058 * 300.00814 * 10 9 8 12 12 C 1.52997 * 109.47415 * 180.02562 * 10 9 8 13 13 S 1.81398 * 109.47164 * 185.00277 * 12 10 9 14 14 O 1.42099 * 110.54215 * 291.62193 * 13 12 10 15 15 O 1.42097 * 110.54444 * 68.37666 * 13 12 10 16 16 O 1.52198 * 104.44906 * 179.97438 * 13 12 10 17 17 C 1.35902 * 113.99922 * 74.99767 * 16 13 12 18 18 C 1.38671 * 120.04173 * 90.00375 * 17 16 13 19 19 C 1.38386 * 119.91987 * 179.97438 * 18 17 16 20 20 F 1.35099 * 119.99333 * 179.97438 * 19 18 17 21 21 C 1.38468 * 120.00588 * 0.02562 * 19 18 17 22 22 C 1.38256 * 120.08698 * 359.97438 * 21 19 18 23 23 C 1.50703 * 119.96190 * 180.02562 * 22 21 19 24 24 O 1.42900 * 109.46646 * 244.99687 * 23 22 21 25 25 Si 1.86299 * 109.46976 * 5.00022 * 23 22 21 26 26 C 1.38138 * 120.07526 * 359.74390 * 22 21 19 27 27 C 1.52997 * 109.46817 * 60.00194 * 10 9 8 28 28 C 1.52999 * 109.46961 * 300.00186 * 6 4 3 29 29 H 1.08998 * 109.46939 * 299.99720 * 1 2 3 30 30 H 1.08992 * 109.47077 * 59.99823 * 1 2 3 31 31 H 1.09003 * 109.46618 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.47407 * 240.00533 * 2 1 3 33 33 H 1.08996 * 109.47314 * 119.99461 * 2 1 3 34 34 H 1.09002 * 109.47153 * 59.99773 * 8 6 4 35 35 H 1.09001 * 109.46832 * 299.99964 * 8 6 4 36 36 H 1.08992 * 109.47399 * 59.99823 * 9 8 6 37 37 H 1.09004 * 109.46724 * 180.02562 * 9 8 6 38 38 H 1.09001 * 109.46547 * 305.00282 * 12 10 9 39 39 H 1.08998 * 109.47097 * 64.99767 * 12 10 9 40 40 H 1.08003 * 120.03655 * 359.97438 * 18 17 16 41 41 H 1.07997 * 119.96146 * 179.97438 * 21 19 18 42 42 H 1.09000 * 109.46897 * 125.00364 * 23 22 21 43 43 H 0.96699 * 113.99790 * 60.00455 * 24 23 22 44 44 H 1.48497 * 110.00247 * 58.68259 * 25 23 22 45 45 H 1.48503 * 109.99544 * 180.02562 * 25 23 22 46 46 H 1.08004 * 119.99919 * 180.27739 * 26 22 21 47 47 H 1.09002 * 109.47153 * 60.00231 * 27 10 9 48 48 H 1.09001 * 109.47289 * 180.02562 * 27 10 9 49 49 H 1.09000 * 109.47486 * 59.99568 * 28 6 4 50 50 H 1.09002 * 109.46716 * 299.99650 * 28 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3691 0.0000 4 6 3.3447 1.5450 -0.0005 5 8 4.0808 0.5868 -0.0005 6 6 3.9207 2.9375 0.0000 7 1 3.5851 3.4692 0.8904 8 6 5.4486 2.8575 -0.0001 9 6 6.0333 4.2714 0.0011 10 6 5.5617 5.0194 -1.2475 11 9 5.9928 4.3373 -2.3904 12 6 6.1469 6.4330 -1.2467 13 16 5.4714 7.3679 -2.6468 14 8 5.9584 6.8466 -3.8758 15 8 4.0862 7.6208 -2.4558 16 8 6.1215 8.7397 -2.5365 17 6 7.4242 8.7666 -2.9225 18 6 7.7515 9.0312 -4.2438 19 6 9.0789 9.0586 -4.6339 20 9 9.3994 9.3156 -5.9209 21 6 10.0786 8.8214 -3.7056 22 6 9.7526 8.5577 -2.3882 23 6 10.8429 8.3006 -1.3800 24 8 10.7457 6.9560 -0.9059 25 14 12.5042 8.5576 -2.1829 26 6 8.4289 8.5352 -1.9937 27 6 4.0338 5.0994 -1.2474 28 6 3.4485 3.6852 -1.2485 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 1.8934 -0.5137 -0.8900 33 1 1.8934 -0.5137 0.8900 34 1 5.7845 2.3257 -0.8903 35 1 5.7846 2.3250 0.8896 36 1 5.6974 4.8028 0.8914 37 1 7.1218 4.2144 0.0005 38 1 5.8847 6.9341 -0.3149 39 1 7.2317 6.3772 -1.3365 40 1 6.9713 9.2156 -4.9675 41 1 11.1143 8.8426 -4.0109 42 1 10.7333 8.9898 -0.5427 43 1 10.8343 6.2873 -1.5988 44 1 12.6055 9.9428 -2.7084 45 1 13.5879 8.3065 -1.1991 46 1 8.1759 8.3335 -0.9633 47 1 3.6979 5.6308 -0.3570 48 1 3.6977 5.6319 -2.1372 49 1 2.3600 3.7422 -1.2480 50 1 3.7841 3.1535 -2.1390 There are 75 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 75 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_8925532_16464698.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 12:30:59 Heat of formation + Delta-G solvation = -283.315496 kcal Electronic energy + Delta-G solvation = -40656.178014 eV Core-core repulsion = 34993.340161 eV Total energy + Delta-G solvation = -5662.837853 eV No. of doubly occupied orbitals = 75 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 421.123 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -50.16343 -49.02960 -42.44357 -41.77326 -39.86337 -39.09185 -38.52089 -37.66883 -37.44845 -37.36562 -34.22044 -32.78607 -32.62208 -32.06099 -31.61683 -29.08425 -27.24142 -25.28626 -24.90620 -24.14539 -23.54434 -23.38411 -21.98865 -21.54159 -20.83618 -19.73434 -19.15052 -19.03918 -18.78362 -18.24025 -17.87634 -17.71954 -17.66770 -17.57095 -17.22315 -17.06120 -16.86543 -16.66400 -16.24779 -16.14970 -16.06748 -15.53820 -15.36546 -15.25476 -15.00580 -14.86372 -14.52194 -14.36204 -14.23636 -14.08984 -13.99194 -13.73634 -13.68493 -13.49822 -13.45755 -13.28553 -13.22584 -13.21285 -13.15896 -13.14362 -13.03311 -12.91519 -12.59568 -12.45060 -12.17564 -12.16405 -12.06806 -11.93905 -11.72371 -11.55873 -11.34058 -11.10833 -10.59297 -10.33152 -10.10930 -4.98326 -1.34573 -0.34884 -0.31480 0.75478 1.07637 1.26417 1.61177 1.64135 1.95636 1.98783 2.28775 2.61809 2.83516 2.84420 3.11546 3.19388 3.30138 3.36679 3.44860 3.52509 3.55419 3.62581 3.67856 3.79063 3.81175 3.82090 3.95975 4.02758 4.04174 4.06832 4.17528 4.29600 4.30753 4.32315 4.35601 4.49582 4.56632 4.57515 4.63146 4.66426 4.72027 4.80152 4.81609 4.86312 4.88374 4.92140 4.96400 5.03658 5.10838 5.13733 5.27851 5.40235 5.43478 6.64091 6.75152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.053 3.947 3 O -0.360 6.360 4 C 0.464 3.536 5 O -0.539 6.539 6 C -0.078 4.078 7 H 0.147 0.853 8 C -0.110 4.110 9 C -0.121 4.121 10 C 0.128 3.872 11 F -0.210 7.210 12 C -0.664 4.664 13 S 2.582 3.418 14 O -0.968 6.968 15 O -0.947 6.947 16 O -0.661 6.661 17 C 0.077 3.923 18 C -0.145 4.145 19 C 0.118 3.882 20 F -0.130 7.130 21 C -0.125 4.125 22 C -0.068 4.068 23 C -0.060 4.060 24 O -0.543 6.543 25 Si 0.754 3.246 26 C -0.109 4.109 27 C -0.178 4.178 28 C -0.110 4.110 29 H 0.071 0.929 30 H 0.067 0.933 31 H 0.095 0.905 32 H 0.064 0.936 33 H 0.069 0.931 34 H 0.058 0.942 35 H 0.087 0.913 36 H 0.125 0.875 37 H 0.103 0.897 38 H 0.205 0.795 39 H 0.178 0.822 40 H 0.149 0.851 41 H 0.173 0.827 42 H 0.134 0.866 43 H 0.399 0.601 44 H -0.284 1.284 45 H -0.293 1.293 46 H 0.184 0.816 47 H 0.135 0.865 48 H 0.075 0.925 49 H 0.098 0.902 50 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.698 0.724 5.520 6.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.020 4.020 3 O -0.276 6.276 4 C 0.308 3.692 5 O -0.429 6.429 6 C -0.096 4.096 7 H 0.164 0.836 8 C -0.147 4.147 9 C -0.159 4.159 10 C 0.108 3.892 11 F -0.190 7.190 12 C -0.793 4.793 13 S 2.681 3.319 14 O -0.967 6.967 15 O -0.945 6.945 16 O -0.620 6.620 17 C 0.035 3.965 18 C -0.166 4.166 19 C 0.099 3.901 20 F -0.109 7.109 21 C -0.144 4.144 22 C -0.068 4.068 23 C -0.171 4.171 24 O -0.351 6.351 25 Si 0.660 3.340 26 C -0.129 4.129 27 C -0.216 4.216 28 C -0.147 4.147 29 H 0.090 0.910 30 H 0.086 0.914 31 H 0.114 0.886 32 H 0.082 0.918 33 H 0.088 0.912 34 H 0.077 0.923 35 H 0.106 0.894 36 H 0.143 0.857 37 H 0.122 0.878 38 H 0.222 0.778 39 H 0.195 0.805 40 H 0.167 0.833 41 H 0.189 0.811 42 H 0.151 0.849 43 H 0.250 0.750 44 H -0.211 1.211 45 H -0.220 1.220 46 H 0.201 0.799 47 H 0.153 0.847 48 H 0.093 0.907 49 H 0.116 0.884 50 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 3.034 1.500 5.459 6.423 hybrid contribution -0.502 -0.200 -0.193 0.574 sum 2.532 1.300 5.266 5.985 Atomic orbital electron populations 1.21824 0.90682 1.04243 1.03770 1.23244 0.96928 0.79422 1.02400 1.86517 1.24276 1.33387 1.83465 1.24272 0.80573 0.93286 0.71066 1.90672 1.61119 1.44440 1.46659 1.21301 0.96733 0.88508 1.03102 0.83593 1.21470 0.91528 0.97733 1.04005 1.22153 1.03375 0.94315 0.96064 1.20775 0.94647 0.88199 0.85556 1.92950 1.91287 1.81711 1.53091 1.31444 1.16304 1.08264 1.23273 1.05771 0.74966 0.73780 0.77343 1.93658 1.80718 1.79351 1.42933 1.93636 1.30890 1.82594 1.87370 1.85734 1.31581 1.58044 1.86663 1.17858 0.78331 1.07112 0.93191 1.21445 0.97258 1.01353 0.96503 1.17261 0.92185 1.01094 0.79566 1.91576 1.93204 1.91312 1.34764 1.21507 1.00374 1.00096 0.92444 1.20190 0.94850 0.97884 0.93922 1.25071 1.03838 0.88279 0.99949 1.86513 1.95772 1.13821 1.38979 0.93846 0.73565 0.83366 0.83249 1.21590 0.90789 0.99356 1.01122 1.22820 0.92478 0.99115 1.07178 1.21464 1.02746 0.94211 0.96311 0.91042 0.91382 0.88623 0.91754 0.91230 0.92340 0.89445 0.85683 0.87814 0.77754 0.80468 0.83311 0.81055 0.84856 0.74997 1.21061 1.22037 0.79860 0.84724 0.90693 0.88383 0.92123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.46 10.29 71.98 0.74 1.20 16 2 C 0.05 0.08 6.19 71.98 0.45 0.53 16 3 O -0.36 -1.30 10.12 -51.44 -0.52 -1.82 16 4 C 0.46 2.09 7.26 71.23 0.52 2.60 16 5 O -0.54 -5.95 15.73 21.97 0.35 -5.61 16 6 C -0.08 0.20 2.63 -11.54 -0.03 0.17 16 7 H 0.15 -1.30 8.14 -2.39 -0.02 -1.32 16 8 C -0.11 0.31 4.37 30.59 0.13 0.44 16 9 C -0.12 1.04 5.00 30.60 0.15 1.19 16 10 C 0.13 -0.51 0.89 -10.79 -0.01 -0.52 16 11 F -0.21 -0.75 15.33 44.97 0.69 -0.06 16 12 C -0.66 5.46 4.79 71.98 0.34 5.81 16 13 S 2.58 6.26 4.41 -56.49 -0.25 6.01 16 14 O -0.97 -8.72 15.96 -118.57 -1.89 -10.62 16 15 O -0.95 -7.40 15.64 -118.57 -1.85 -9.26 16 16 O -0.66 -0.96 10.05 -61.54 -0.62 -1.58 16 17 C 0.08 0.01 4.79 22.50 0.11 0.12 16 18 C -0.14 -0.37 9.03 22.41 0.20 -0.16 16 19 C 0.12 0.03 7.30 22.36 0.16 0.19 16 20 F -0.13 -0.36 17.27 44.97 0.78 0.42 16 21 C -0.13 0.66 8.64 22.33 0.19 0.86 16 22 C -0.07 0.49 5.35 -19.88 -0.11 0.38 16 23 C -0.06 0.57 2.80 71.24 0.20 0.77 16 24 O -0.54 5.32 12.84 -148.98 -1.91 3.41 16 25 Si 0.75 -5.92 29.80 68.60 2.04 -3.88 16 26 C -0.11 0.68 8.10 22.37 0.18 0.87 16 27 C -0.18 0.52 4.32 30.61 0.13 0.65 16 28 C -0.11 0.15 5.02 30.61 0.15 0.31 16 29 H 0.07 -0.25 8.14 -2.39 -0.02 -0.27 16 30 H 0.07 -0.19 8.14 -2.39 -0.02 -0.21 16 31 H 0.10 -0.56 8.14 -2.39 -0.02 -0.58 16 32 H 0.06 0.17 8.13 -2.39 -0.02 0.15 16 33 H 0.07 0.11 8.13 -2.39 -0.02 0.09 16 34 H 0.06 0.15 7.76 -2.39 -0.02 0.13 16 35 H 0.09 -0.27 8.10 -2.39 -0.02 -0.29 16 36 H 0.12 -1.87 8.14 -2.39 -0.02 -1.89 16 37 H 0.10 -1.09 8.14 -2.39 -0.02 -1.10 16 38 H 0.21 -3.52 8.14 -2.39 -0.02 -3.54 16 39 H 0.18 -2.26 6.63 -2.39 -0.02 -2.28 16 40 H 0.15 0.46 8.06 -2.91 -0.02 0.44 16 41 H 0.17 -1.71 4.90 -2.91 -0.01 -1.72 16 42 H 0.13 -1.41 7.96 -2.39 -0.02 -1.43 16 43 H 0.40 -6.68 8.70 -74.06 -0.64 -7.32 16 44 H -0.28 0.68 7.11 99.48 0.71 1.39 16 45 H -0.29 -0.02 7.11 99.48 0.71 0.68 16 46 H 0.18 -2.42 7.52 -2.91 -0.02 -2.44 16 47 H 0.13 -1.26 8.14 -2.39 -0.02 -1.28 16 48 H 0.07 0.11 5.40 -2.39 -0.01 0.09 16 49 H 0.10 -0.26 8.11 -2.39 -0.02 -0.28 16 50 H 0.06 0.15 7.80 -2.39 -0.02 0.13 16 Total: 0.00 -31.16 420.47 0.72 -30.44 By element: Atomic # 1 Polarization: -23.25 SS G_CDS: 0.39 Total: -22.86 kcal Atomic # 6 Polarization: 11.89 SS G_CDS: 3.52 Total: 15.41 kcal Atomic # 8 Polarization: -19.03 SS G_CDS: -6.45 Total: -25.48 kcal Atomic # 9 Polarization: -1.11 SS G_CDS: 1.47 Total: 0.36 kcal Atomic # 14 Polarization: -5.92 SS G_CDS: 2.04 Total: -3.88 kcal Atomic # 16 Polarization: 6.26 SS G_CDS: -0.25 Total: 6.01 kcal Total: -31.16 0.72 -30.44 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_8925532_16464698.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -252.877 kcal (2) G-P(sol) polarization free energy of solvation -31.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -284.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.438 kcal (6) G-S(sol) free energy of system = (1) + (5) -283.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds