Wall clock time and date at job start Mon Mar 8 2021 12:33:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.45199 * 109.47075 * 2 1 4 4 C 1.34230 * 116.99614 * 179.97438 * 3 2 1 5 5 O 1.20824 * 120.00179 * 0.02562 * 4 3 2 6 6 C 1.50706 * 119.99717 * 179.97438 * 4 3 2 7 7 H 1.08999 * 112.84683 * 50.33974 * 6 4 3 8 8 C 1.53780 * 113.61385 * 181.53083 * 6 4 3 9 9 C 1.53780 * 87.07918 * 139.98333 * 8 6 4 10 10 F 1.39901 * 113.61408 * 89.20262 * 9 8 6 11 11 C 1.53001 * 113.61340 * 220.01803 * 9 8 6 12 12 S 1.81399 * 109.47220 * 180.02562 * 11 9 8 13 13 O 1.42102 * 110.53809 * 291.62441 * 12 11 9 14 14 O 1.42099 * 110.54274 * 68.37299 * 12 11 9 15 15 O 1.52198 * 104.45108 * 180.02562 * 12 11 9 16 16 C 1.35908 * 113.99827 * 74.99945 * 15 12 11 17 17 C 1.38667 * 120.03838 * 269.72519 * 16 15 12 18 18 C 1.38390 * 119.91762 * 179.75372 * 17 16 15 19 19 F 1.35095 * 120.00038 * 180.25274 * 18 17 16 20 20 C 1.38478 * 120.00181 * 0.54150 * 18 17 16 21 21 C 1.38246 * 120.08371 * 359.71131 * 20 18 17 22 22 C 1.50705 * 119.95972 * 180.02562 * 21 20 18 23 23 O 1.42903 * 109.47147 * 119.97213 * 22 21 20 24 24 Si 1.86299 * 109.46695 * 359.97438 * 22 21 20 25 25 C 1.38128 * 120.08586 * 0.02562 * 21 20 18 26 26 C 1.53772 * 113.61623 * 279.13898 * 6 4 3 27 27 H 1.08996 * 109.47853 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47153 * 300.00058 * 1 2 3 29 29 H 1.08998 * 109.47533 * 59.99688 * 1 2 3 30 30 H 1.09002 * 109.47153 * 239.99942 * 2 1 3 31 31 H 1.09001 * 109.46832 * 120.00132 * 2 1 3 32 32 H 1.09001 * 113.61713 * 254.53211 * 8 6 4 33 33 H 1.09002 * 113.61647 * 25.43696 * 8 6 4 34 34 H 1.09001 * 109.47122 * 300.00297 * 11 9 8 35 35 H 1.08996 * 109.47300 * 59.99961 * 11 9 8 36 36 H 1.08006 * 120.04551 * 359.97438 * 17 16 15 37 37 H 1.07998 * 119.95717 * 179.72733 * 20 18 17 38 38 H 1.08996 * 109.47306 * 239.97780 * 22 21 20 39 39 H 0.96700 * 113.99555 * 179.97438 * 23 22 21 40 40 H 1.48500 * 110.00258 * 60.00197 * 24 22 21 41 41 H 1.48505 * 109.99961 * 181.32154 * 24 22 21 42 42 H 1.07993 * 120.00763 * 179.97438 * 25 21 20 43 43 H 1.09000 * 113.61784 * 334.57061 * 26 6 4 44 44 H 1.08999 * 113.61446 * 105.47293 * 26 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5447 0.0005 5 8 4.0807 0.5865 0.0005 6 6 3.9207 2.9374 0.0000 7 1 3.4897 3.5739 0.7727 8 6 5.4578 2.9682 -0.0369 9 6 5.3323 4.1520 -1.0104 10 9 5.2762 5.3969 -0.3745 11 6 6.3470 4.1147 -2.1548 12 16 6.1004 5.5555 -3.2290 13 8 4.8655 5.4531 -3.9247 14 8 6.4624 6.7507 -2.5510 15 8 7.1560 5.4048 -4.3150 16 6 6.8674 4.4494 -5.2376 17 6 7.2956 3.1449 -5.0433 18 6 6.9960 2.1730 -5.9818 19 9 7.4080 0.9006 -5.7917 20 6 6.2790 2.5061 -7.1187 21 6 5.8565 3.8077 -7.3151 22 6 5.0759 4.1669 -8.5532 23 8 3.7963 4.6803 -8.1773 24 14 4.8501 2.6475 -9.6074 25 6 6.1489 4.7794 -6.3780 26 6 3.9501 3.5913 -1.3914 27 1 -0.3635 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 5.9123 3.2340 0.9175 33 1 5.9017 2.0794 -0.4854 34 1 7.3571 4.1357 -1.7456 35 1 6.2085 3.2016 -2.7336 36 1 7.8593 2.8869 -4.1588 37 1 6.0494 1.7480 -7.8528 38 1 5.6194 4.9238 -9.1185 39 1 3.2387 4.9331 -8.9257 40 1 4.1103 1.6077 -8.8480 41 1 4.1093 2.9948 -10.8467 42 1 5.8186 5.7959 -6.5329 43 1 3.9810 2.8732 -2.2109 44 1 3.1891 4.3595 -1.5290 There are 69 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 69 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_8925532_16464788.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 12:33:20 Heat of formation + Delta-G solvation = -241.226051 kcal Electronic energy + Delta-G solvation = -36050.773126 eV Core-core repulsion = 30700.835646 eV Total energy + Delta-G solvation = -5349.937480 eV No. of doubly occupied orbitals = 69 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 393.092 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -50.23630 -49.22866 -42.45266 -41.82457 -39.87345 -39.41210 -38.38095 -37.71723 -37.48321 -37.26340 -33.19789 -32.85272 -32.04551 -31.65115 -27.53597 -27.42360 -26.92786 -25.14761 -24.07474 -23.37293 -22.31574 -21.56691 -20.96628 -19.68340 -19.30519 -19.09838 -18.87605 -18.62909 -18.09440 -17.91219 -17.72808 -17.64436 -17.45196 -17.16326 -16.89489 -16.53651 -16.25181 -16.13336 -15.86106 -15.64991 -15.49747 -15.27786 -14.72099 -14.69371 -14.43692 -14.35408 -14.21062 -13.92964 -13.83169 -13.80374 -13.58898 -13.42056 -13.32369 -13.26764 -13.15783 -13.09976 -13.01590 -12.98944 -12.62279 -12.54000 -12.48905 -12.04763 -11.96513 -11.58973 -11.57281 -11.41577 -10.82855 -10.44473 -10.12911 -5.15749 -1.35646 -0.48398 -0.33521 0.73407 1.03229 1.03592 1.41747 1.51143 1.77202 1.86381 2.27320 2.48086 2.57707 2.64239 2.66459 2.80114 3.01445 3.04735 3.13862 3.25744 3.38166 3.40846 3.53100 3.64194 3.72247 3.73846 3.88433 3.91773 3.94660 4.09866 4.15263 4.20011 4.24121 4.25723 4.31753 4.41846 4.49507 4.54062 4.55454 4.66448 4.66829 4.76341 4.85344 4.87985 4.98059 5.30911 5.37967 6.24384 6.63855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.060 3.940 3 O -0.353 6.353 4 C 0.475 3.525 5 O -0.502 6.502 6 C -0.109 4.109 7 H 0.139 0.861 8 C -0.121 4.121 9 C 0.103 3.897 10 F -0.170 7.170 11 C -0.675 4.675 12 S 2.592 3.408 13 O -0.931 6.931 14 O -0.902 6.902 15 O -0.657 6.657 16 C 0.094 3.906 17 C -0.170 4.170 18 C 0.132 3.868 19 F -0.120 7.120 20 C -0.132 4.132 21 C -0.024 4.024 22 C -0.081 4.081 23 O -0.529 6.529 24 Si 0.682 3.318 25 C -0.069 4.069 26 C -0.143 4.143 27 H 0.082 0.918 28 H 0.068 0.932 29 H 0.068 0.932 30 H 0.071 0.929 31 H 0.072 0.928 32 H 0.102 0.898 33 H 0.121 0.879 34 H 0.159 0.841 35 H 0.155 0.845 36 H 0.158 0.842 37 H 0.154 0.846 38 H 0.090 0.910 39 H 0.386 0.614 40 H -0.249 1.249 41 H -0.253 1.253 42 H 0.153 0.847 43 H 0.115 0.885 44 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.154 -3.594 -4.043 5.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.013 4.013 3 O -0.270 6.270 4 C 0.318 3.682 5 O -0.390 6.390 6 C -0.128 4.128 7 H 0.157 0.843 8 C -0.159 4.159 9 C 0.083 3.917 10 F -0.150 7.150 11 C -0.799 4.799 12 S 2.685 3.315 13 O -0.929 6.929 14 O -0.900 6.900 15 O -0.615 6.615 16 C 0.053 3.947 17 C -0.190 4.190 18 C 0.112 3.888 19 F -0.098 7.098 20 C -0.151 4.151 21 C -0.024 4.024 22 C -0.190 4.190 23 O -0.337 6.337 24 Si 0.582 3.418 25 C -0.090 4.090 26 C -0.181 4.181 27 H 0.101 0.899 28 H 0.087 0.913 29 H 0.087 0.913 30 H 0.090 0.910 31 H 0.090 0.910 32 H 0.121 0.879 33 H 0.139 0.861 34 H 0.177 0.823 35 H 0.173 0.827 36 H 0.176 0.824 37 H 0.171 0.829 38 H 0.108 0.892 39 H 0.235 0.765 40 H -0.174 1.174 41 H -0.178 1.178 42 H 0.171 0.829 43 H 0.133 0.867 44 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -0.057 -3.856 -4.027 5.576 hybrid contribution -0.485 0.083 0.658 0.821 sum -0.542 -3.773 -3.369 5.087 Atomic orbital electron populations 1.21828 0.92202 1.03328 1.03780 1.23124 0.95738 0.79613 1.02827 1.86522 1.24011 1.32961 1.83493 1.23217 0.80904 0.91814 0.72307 1.90691 1.60540 1.42712 1.45035 1.22482 0.97158 0.92039 1.01148 0.84343 1.23583 0.93872 0.97534 1.00897 1.21204 0.95650 0.82398 0.92433 1.93019 1.97084 1.41977 1.82922 1.31367 1.10122 1.25041 1.13397 1.05735 0.73986 0.76582 0.75177 1.93711 1.44132 1.86710 1.68344 1.93702 1.81940 1.40444 1.73897 1.85800 1.68291 1.59599 1.47830 1.17599 1.01616 0.84924 0.90602 1.21281 1.03822 0.91203 1.02738 1.16948 0.97774 0.79413 0.94629 1.91606 1.88094 1.35131 1.95010 1.21215 0.99479 0.97030 0.97344 1.18954 0.96263 0.91753 0.95480 1.24831 0.86429 1.09191 0.98537 1.86627 1.26324 1.84227 1.36473 0.95151 0.90762 0.77599 0.78325 1.21235 0.94612 1.01997 0.91135 1.23806 0.95971 1.01744 0.96585 0.89934 0.91289 0.91281 0.91013 0.90966 0.87900 0.86067 0.82296 0.82700 0.82414 0.82899 0.89231 0.76538 1.17375 1.17770 0.82912 0.86682 0.87072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.25 10.29 37.16 0.38 0.64 16 2 C 0.06 0.01 6.19 37.16 0.23 0.23 16 3 O -0.35 -0.52 10.22 -39.26 -0.40 -0.93 16 4 C 0.48 0.73 7.48 36.01 0.27 1.00 16 5 O -0.50 -1.95 15.66 -18.75 -0.29 -2.24 16 6 C -0.11 0.08 4.23 -90.96 -0.39 -0.30 16 7 H 0.14 -0.30 8.14 -51.93 -0.42 -0.72 16 8 C -0.12 0.17 6.85 -25.92 -0.18 -0.01 16 9 C 0.10 -0.04 1.62 -89.72 -0.15 -0.19 16 10 F -0.17 -0.34 16.28 2.25 0.04 -0.30 16 11 C -0.67 1.25 5.19 37.16 0.19 1.44 16 12 S 2.59 4.95 4.89 -107.50 -0.53 4.42 16 13 O -0.93 -3.28 16.26 -67.04 -1.09 -4.37 16 14 O -0.90 -5.04 17.54 -67.03 -1.18 -6.21 16 15 O -0.66 -0.78 10.05 -51.78 -0.52 -1.30 16 16 C 0.09 0.04 4.79 -39.23 -0.19 -0.14 16 17 C -0.17 0.24 8.44 -39.37 -0.33 -0.09 16 18 C 0.13 -0.15 7.30 -39.44 -0.29 -0.43 16 19 F -0.12 0.06 17.27 2.25 0.04 0.10 16 20 C -0.13 0.20 8.65 -39.49 -0.34 -0.14 16 21 C -0.02 0.01 5.42 -104.66 -0.57 -0.55 16 22 C -0.08 0.16 2.81 36.01 0.10 0.27 16 23 O -0.53 0.19 12.74 -35.23 -0.45 -0.26 16 24 Si 0.68 -1.95 29.78 -169.99 -5.06 -7.01 16 25 C -0.07 -0.05 8.61 -39.43 -0.34 -0.39 16 26 C -0.14 0.13 7.09 -25.83 -0.18 -0.06 16 27 H 0.08 -0.24 8.14 -51.93 -0.42 -0.66 16 28 H 0.07 -0.11 8.14 -51.93 -0.42 -0.53 16 29 H 0.07 -0.10 8.14 -51.93 -0.42 -0.53 16 30 H 0.07 0.00 8.13 -51.93 -0.42 -0.43 16 31 H 0.07 0.00 8.13 -51.93 -0.42 -0.42 16 32 H 0.10 -0.23 8.14 -51.93 -0.42 -0.65 16 33 H 0.12 -0.21 7.41 -51.93 -0.38 -0.60 16 34 H 0.16 -0.70 8.14 -51.92 -0.42 -1.12 16 35 H 0.15 -0.68 6.43 -51.93 -0.33 -1.01 16 36 H 0.16 -0.68 7.52 -52.48 -0.39 -1.07 16 37 H 0.15 -0.54 4.87 -52.49 -0.26 -0.79 16 38 H 0.09 -0.38 7.96 -51.93 -0.41 -0.79 16 39 H 0.39 -1.70 8.74 45.56 0.40 -1.30 16 40 H -0.25 -0.04 7.11 56.52 0.40 0.36 16 41 H -0.25 0.20 7.11 56.52 0.40 0.60 16 42 H 0.15 0.06 8.06 -52.49 -0.42 -0.36 16 43 H 0.11 -0.22 7.92 -51.93 -0.41 -0.63 16 44 H 0.11 -0.14 8.14 -51.93 -0.42 -0.56 16 LS Contribution 392.05 15.07 5.91 5.91 Total: 0.00 -11.62 392.05 -10.53 -22.15 By element: Atomic # 1 Polarization: -6.00 SS G_CDS: -5.22 Total: -11.22 kcal Atomic # 6 Polarization: 3.04 SS G_CDS: -1.77 Total: 1.27 kcal Atomic # 8 Polarization: -11.38 SS G_CDS: -3.93 Total: -15.31 kcal Atomic # 9 Polarization: -0.27 SS G_CDS: 0.08 Total: -0.20 kcal Atomic # 14 Polarization: -1.95 SS G_CDS: -5.06 Total: -7.01 kcal Atomic # 16 Polarization: 4.95 SS G_CDS: -0.53 Total: 4.42 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -11.62 -10.53 -22.15 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_8925532_16464788.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -219.077 kcal (2) G-P(sol) polarization free energy of solvation -11.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -230.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.149 kcal (6) G-S(sol) free energy of system = (1) + (5) -241.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds