Wall clock time and date at job start Mon Mar 8 2021 12:33:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.45199 * 109.47075 * 2 1 4 4 C 1.34230 * 116.99614 * 179.97438 * 3 2 1 5 5 O 1.20824 * 120.00179 * 0.02562 * 4 3 2 6 6 C 1.50706 * 119.99717 * 179.97438 * 4 3 2 7 7 H 1.08999 * 112.84683 * 50.33974 * 6 4 3 8 8 C 1.53780 * 113.61385 * 181.53083 * 6 4 3 9 9 C 1.53780 * 87.07918 * 139.98333 * 8 6 4 10 10 F 1.39901 * 113.61408 * 89.20262 * 9 8 6 11 11 C 1.53001 * 113.61340 * 220.01803 * 9 8 6 12 12 S 1.81399 * 109.47220 * 180.02562 * 11 9 8 13 13 O 1.42102 * 110.53809 * 291.62441 * 12 11 9 14 14 O 1.42099 * 110.54274 * 68.37299 * 12 11 9 15 15 O 1.52198 * 104.45108 * 180.02562 * 12 11 9 16 16 C 1.35908 * 113.99827 * 74.99945 * 15 12 11 17 17 C 1.38667 * 120.03838 * 269.72519 * 16 15 12 18 18 C 1.38390 * 119.91762 * 179.75372 * 17 16 15 19 19 F 1.35095 * 120.00038 * 180.25274 * 18 17 16 20 20 C 1.38478 * 120.00181 * 0.54150 * 18 17 16 21 21 C 1.38246 * 120.08371 * 359.71131 * 20 18 17 22 22 C 1.50705 * 119.95972 * 180.02562 * 21 20 18 23 23 O 1.42903 * 109.47147 * 119.97213 * 22 21 20 24 24 Si 1.86299 * 109.46695 * 359.97438 * 22 21 20 25 25 C 1.38128 * 120.08586 * 0.02562 * 21 20 18 26 26 C 1.53772 * 113.61623 * 279.13898 * 6 4 3 27 27 H 1.08996 * 109.47853 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47153 * 300.00058 * 1 2 3 29 29 H 1.08998 * 109.47533 * 59.99688 * 1 2 3 30 30 H 1.09002 * 109.47153 * 239.99942 * 2 1 3 31 31 H 1.09001 * 109.46832 * 120.00132 * 2 1 3 32 32 H 1.09001 * 113.61713 * 254.53211 * 8 6 4 33 33 H 1.09002 * 113.61647 * 25.43696 * 8 6 4 34 34 H 1.09001 * 109.47122 * 300.00297 * 11 9 8 35 35 H 1.08996 * 109.47300 * 59.99961 * 11 9 8 36 36 H 1.08006 * 120.04551 * 359.97438 * 17 16 15 37 37 H 1.07998 * 119.95717 * 179.72733 * 20 18 17 38 38 H 1.08996 * 109.47306 * 239.97780 * 22 21 20 39 39 H 0.96700 * 113.99555 * 179.97438 * 23 22 21 40 40 H 1.48500 * 110.00258 * 60.00197 * 24 22 21 41 41 H 1.48505 * 109.99961 * 181.32154 * 24 22 21 42 42 H 1.07993 * 120.00763 * 179.97438 * 25 21 20 43 43 H 1.09000 * 113.61784 * 334.57061 * 26 6 4 44 44 H 1.08999 * 113.61446 * 105.47293 * 26 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5447 0.0005 5 8 4.0807 0.5865 0.0005 6 6 3.9207 2.9374 0.0000 7 1 3.4897 3.5739 0.7727 8 6 5.4578 2.9682 -0.0369 9 6 5.3323 4.1520 -1.0104 10 9 5.2762 5.3969 -0.3745 11 6 6.3470 4.1147 -2.1548 12 16 6.1004 5.5555 -3.2290 13 8 4.8655 5.4531 -3.9247 14 8 6.4624 6.7507 -2.5510 15 8 7.1560 5.4048 -4.3150 16 6 6.8674 4.4494 -5.2376 17 6 7.2956 3.1449 -5.0433 18 6 6.9960 2.1730 -5.9818 19 9 7.4080 0.9006 -5.7917 20 6 6.2790 2.5061 -7.1187 21 6 5.8565 3.8077 -7.3151 22 6 5.0759 4.1669 -8.5532 23 8 3.7963 4.6803 -8.1773 24 14 4.8501 2.6475 -9.6074 25 6 6.1489 4.7794 -6.3780 26 6 3.9501 3.5913 -1.3914 27 1 -0.3635 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 5.9123 3.2340 0.9175 33 1 5.9017 2.0794 -0.4854 34 1 7.3571 4.1357 -1.7456 35 1 6.2085 3.2016 -2.7336 36 1 7.8593 2.8869 -4.1588 37 1 6.0494 1.7480 -7.8528 38 1 5.6194 4.9238 -9.1185 39 1 3.2387 4.9331 -8.9257 40 1 4.1103 1.6077 -8.8480 41 1 4.1093 2.9948 -10.8467 42 1 5.8186 5.7959 -6.5329 43 1 3.9810 2.8732 -2.2109 44 1 3.1891 4.3595 -1.5290 There are 69 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 69 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_8925532_16464788.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 12:33:19 Heat of formation + Delta-G solvation = -242.542463 kcal Electronic energy + Delta-G solvation = -36050.830210 eV Core-core repulsion = 30700.835646 eV Total energy + Delta-G solvation = -5349.994564 eV No. of doubly occupied orbitals = 69 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 393.092 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -50.14657 -49.26414 -42.44682 -41.89195 -39.80453 -39.38052 -38.57442 -37.63295 -37.59094 -37.44569 -33.10700 -32.79680 -31.97293 -31.57733 -27.42763 -27.30329 -26.89214 -25.12253 -24.02604 -23.29279 -22.33353 -21.57923 -20.92049 -19.71915 -19.33823 -19.10401 -18.87257 -18.57771 -18.01881 -17.92500 -17.73829 -17.65045 -17.41041 -17.11284 -16.80527 -16.53028 -16.25805 -16.17375 -15.79800 -15.52545 -15.47672 -15.26389 -14.72356 -14.65723 -14.41366 -14.34898 -14.21552 -13.87966 -13.73290 -13.69816 -13.56104 -13.53636 -13.45633 -13.27657 -13.12894 -13.11101 -12.99568 -12.95664 -12.57036 -12.49839 -12.37663 -11.98382 -11.91464 -11.60879 -11.55041 -11.45827 -10.69314 -10.33012 -10.05557 -4.95015 -1.40871 -0.40486 -0.27251 0.70156 0.95196 1.21783 1.51886 1.59362 1.91945 1.96768 2.23798 2.54442 2.63416 2.71851 2.75072 2.83718 3.12556 3.15371 3.20467 3.38360 3.49409 3.56499 3.67193 3.72827 3.82340 3.85374 3.93996 3.99858 4.05467 4.25078 4.28517 4.30985 4.31579 4.39096 4.46597 4.49760 4.59746 4.64354 4.71221 4.73600 4.78229 4.85939 4.94144 4.98537 5.09131 5.36695 5.40289 6.55135 6.55796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.053 3.947 3 O -0.361 6.361 4 C 0.477 3.523 5 O -0.528 6.528 6 C -0.110 4.110 7 H 0.150 0.850 8 C -0.113 4.113 9 C 0.093 3.907 10 F -0.187 7.187 11 C -0.658 4.658 12 S 2.589 3.411 13 O -0.958 6.958 14 O -0.951 6.951 15 O -0.658 6.658 16 C 0.075 3.925 17 C -0.161 4.161 18 C 0.128 3.872 19 F -0.121 7.121 20 C -0.129 4.129 21 C -0.033 4.033 22 C -0.094 4.094 23 O -0.555 6.555 24 Si 0.767 3.233 25 C -0.088 4.088 26 C -0.149 4.149 27 H 0.097 0.903 28 H 0.068 0.932 29 H 0.067 0.933 30 H 0.071 0.929 31 H 0.071 0.929 32 H 0.113 0.887 33 H 0.130 0.870 34 H 0.191 0.809 35 H 0.185 0.815 36 H 0.189 0.811 37 H 0.171 0.829 38 H 0.112 0.888 39 H 0.400 0.600 40 H -0.290 1.290 41 H -0.281 1.281 42 H 0.144 0.856 43 H 0.126 0.874 44 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.867 -5.058 -4.134 6.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.020 4.020 3 O -0.277 6.277 4 C 0.320 3.680 5 O -0.418 6.418 6 C -0.129 4.129 7 H 0.168 0.832 8 C -0.151 4.151 9 C 0.073 3.927 10 F -0.167 7.167 11 C -0.786 4.786 12 S 2.687 3.313 13 O -0.956 6.956 14 O -0.949 6.949 15 O -0.617 6.617 16 C 0.034 3.966 17 C -0.182 4.182 18 C 0.109 3.891 19 F -0.100 7.100 20 C -0.148 4.148 21 C -0.033 4.033 22 C -0.202 4.202 23 O -0.365 6.365 24 Si 0.670 3.330 25 C -0.108 4.108 26 C -0.187 4.187 27 H 0.115 0.885 28 H 0.087 0.913 29 H 0.086 0.914 30 H 0.090 0.910 31 H 0.089 0.911 32 H 0.131 0.869 33 H 0.148 0.852 34 H 0.209 0.791 35 H 0.203 0.797 36 H 0.206 0.794 37 H 0.188 0.812 38 H 0.130 0.870 39 H 0.251 0.749 40 H -0.217 1.217 41 H -0.207 1.207 42 H 0.162 0.838 43 H 0.144 0.856 44 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 0.651 -5.254 -4.147 6.725 hybrid contribution -0.766 0.462 0.663 1.113 sum -0.115 -4.792 -3.485 5.926 Atomic orbital electron populations 1.21837 0.90922 1.04289 1.03676 1.23290 0.96812 0.79108 1.02769 1.86533 1.24167 1.33762 1.83283 1.23615 0.80689 0.92319 0.71331 1.90672 1.60970 1.43705 1.46407 1.22599 0.97778 0.90877 1.01616 0.83226 1.23605 0.93313 0.97048 1.01129 1.21410 0.96223 0.82032 0.93044 1.92991 1.97185 1.43198 1.83317 1.31276 1.11756 1.23424 1.12134 1.05556 0.73400 0.77124 0.75223 1.93669 1.45386 1.87353 1.69215 1.93640 1.82524 1.43962 1.74797 1.85763 1.67636 1.60282 1.48044 1.17799 1.02688 0.85574 0.90581 1.21525 1.03030 0.90040 1.03603 1.17003 0.97899 0.79385 0.94834 1.91608 1.88133 1.35202 1.95030 1.21434 0.98687 0.96998 0.97635 1.19133 0.96507 0.91855 0.95807 1.25135 0.86066 1.10655 0.98300 1.86582 1.27262 1.84569 1.38131 0.94262 0.88972 0.74570 0.75198 1.21365 0.95273 1.02152 0.92031 1.23918 0.95919 1.01932 0.96913 0.88452 0.91333 0.91387 0.91047 0.91082 0.86886 0.85219 0.79118 0.79746 0.79393 0.81204 0.87049 0.74859 1.21747 1.20707 0.83793 0.85611 0.87255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.53 10.29 71.98 0.74 1.27 16 2 C 0.05 0.02 6.19 71.98 0.45 0.46 16 3 O -0.36 -1.12 10.22 -51.42 -0.53 -1.65 16 4 C 0.48 1.37 7.48 71.24 0.53 1.91 16 5 O -0.53 -3.95 15.66 21.97 0.34 -3.61 16 6 C -0.11 0.22 4.23 -11.01 -0.05 0.17 16 7 H 0.15 -0.69 8.14 -2.39 -0.02 -0.71 16 8 C -0.11 0.46 6.85 31.12 0.21 0.67 16 9 C 0.09 -0.14 1.62 -10.21 -0.02 -0.16 16 10 F -0.19 -0.81 16.28 44.97 0.73 -0.08 16 11 C -0.66 3.27 5.19 71.98 0.37 3.64 16 12 S 2.59 12.15 4.89 -56.49 -0.28 11.87 16 13 O -0.96 -8.28 16.26 -118.57 -1.93 -10.21 16 14 O -0.95 -12.44 17.54 -118.57 -2.08 -14.52 16 15 O -0.66 -2.01 10.05 -61.61 -0.62 -2.63 16 16 C 0.08 0.08 4.79 22.50 0.11 0.19 16 17 C -0.16 0.66 8.44 22.41 0.19 0.85 16 18 C 0.13 -0.43 7.30 22.36 0.16 -0.27 16 19 F -0.12 0.31 17.27 44.97 0.78 1.09 16 20 C -0.13 0.47 8.65 22.33 0.19 0.66 16 21 C -0.03 0.04 5.42 -19.89 -0.11 -0.07 16 22 C -0.09 0.38 2.81 71.24 0.20 0.58 16 23 O -0.55 0.01 12.74 -148.98 -1.90 -1.89 16 24 Si 0.77 -4.59 29.78 68.60 2.04 -2.54 16 25 C -0.09 -0.20 8.61 22.37 0.19 -0.01 16 26 C -0.15 0.30 7.09 31.17 0.22 0.52 16 27 H 0.10 -0.64 8.14 -2.39 -0.02 -0.66 16 28 H 0.07 -0.22 8.14 -2.39 -0.02 -0.24 16 29 H 0.07 -0.21 8.14 -2.39 -0.02 -0.23 16 30 H 0.07 0.01 8.13 -2.39 -0.02 -0.01 16 31 H 0.07 0.02 8.13 -2.39 -0.02 0.00 16 32 H 0.11 -0.66 8.14 -2.39 -0.02 -0.68 16 33 H 0.13 -0.71 7.41 -2.39 -0.02 -0.73 16 34 H 0.19 -2.15 8.14 -2.39 -0.02 -2.17 16 35 H 0.18 -2.05 6.43 -2.39 -0.02 -2.06 16 36 H 0.19 -2.11 7.52 -2.91 -0.02 -2.14 16 37 H 0.17 -1.35 4.87 -2.91 -0.01 -1.37 16 38 H 0.11 -0.98 7.96 -2.39 -0.02 -1.00 16 39 H 0.40 -3.29 8.74 -74.06 -0.65 -3.93 16 40 H -0.29 -0.23 7.11 99.48 0.71 0.48 16 41 H -0.28 0.43 7.11 99.48 0.71 1.14 16 42 H 0.14 0.43 8.06 -2.91 -0.02 0.41 16 43 H 0.13 -0.56 7.92 -2.39 -0.02 -0.58 16 44 H 0.11 -0.19 8.14 -2.39 -0.02 -0.21 16 Total: 0.00 -28.85 392.05 0.43 -28.42 By element: Atomic # 1 Polarization: -15.15 SS G_CDS: 0.46 Total: -14.69 kcal Atomic # 6 Polarization: 7.02 SS G_CDS: 3.40 Total: 10.42 kcal Atomic # 8 Polarization: -27.79 SS G_CDS: -6.71 Total: -34.49 kcal Atomic # 9 Polarization: -0.50 SS G_CDS: 1.51 Total: 1.01 kcal Atomic # 14 Polarization: -4.59 SS G_CDS: 2.04 Total: -2.54 kcal Atomic # 16 Polarization: 12.15 SS G_CDS: -0.28 Total: 11.87 kcal Total: -28.85 0.43 -28.42 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_8925532_16464788.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -214.125 kcal (2) G-P(sol) polarization free energy of solvation -28.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -242.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -28.418 kcal (6) G-S(sol) free energy of system = (1) + (5) -242.542 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds