Wall clock time and date at job start Mon Mar 8 2021 12:56:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42900 * 113.99908 * 2 1 4 4 C 1.53005 * 112.90599 * 66.16191 * 3 2 1 5 5 F 1.39904 * 109.46965 * 283.36836 * 4 3 2 6 6 F 1.39897 * 109.47252 * 43.37275 * 4 3 2 7 7 F 1.39900 * 109.46661 * 163.37122 * 4 3 2 8 8 C 1.53775 * 113.61196 * 294.90922 * 3 2 1 9 9 C 1.53780 * 87.08307 * 270.88190 * 8 3 2 10 10 H 1.08997 * 113.61148 * 220.01615 * 9 8 3 11 11 C 1.52999 * 113.61162 * 89.11744 * 9 8 3 12 12 S 1.81402 * 109.47241 * 174.99941 * 11 9 8 13 13 O 1.42097 * 110.54129 * 291.62667 * 12 11 9 14 14 O 1.42102 * 110.53981 * 68.37205 * 12 11 9 15 15 O 1.52190 * 104.45024 * 180.02562 * 12 11 9 16 16 C 1.35895 * 114.00413 * 75.00125 * 15 12 11 17 17 C 1.38667 * 120.04501 * 89.99633 * 16 15 12 18 18 C 1.38380 * 119.92385 * 179.97438 * 17 16 15 19 19 F 1.35098 * 120.00058 * 179.97438 * 18 17 16 20 20 C 1.38473 * 120.00502 * 0.02562 * 18 17 16 21 21 C 1.38254 * 120.08421 * 359.97438 * 20 18 17 22 22 C 1.50697 * 119.96003 * 180.02562 * 21 20 18 23 23 O 1.42898 * 109.47349 * 119.99776 * 22 21 20 24 24 Si 1.86307 * 109.47222 * 359.97438 * 22 21 20 25 25 C 1.38133 * 120.07741 * 359.74294 * 21 20 18 26 26 C 1.53779 * 87.07989 * 334.56759 * 9 8 3 27 27 H 1.09001 * 109.46960 * 62.58025 * 1 2 3 28 28 H 1.09008 * 109.46621 * 182.57414 * 1 2 3 29 29 H 1.08992 * 109.47478 * 302.57244 * 1 2 3 30 30 H 1.08999 * 113.61595 * 25.43760 * 8 3 2 31 31 H 1.09004 * 113.61620 * 156.33196 * 8 3 2 32 32 H 1.08999 * 109.47273 * 295.00323 * 11 9 8 33 33 H 1.09000 * 109.47228 * 54.99713 * 11 9 8 34 34 H 1.08007 * 120.03803 * 0.02562 * 17 16 15 35 35 H 1.08000 * 119.96005 * 179.97438 * 20 18 17 36 36 H 1.09003 * 109.46978 * 239.99531 * 22 21 20 37 37 H 0.96698 * 113.99968 * 299.99389 * 23 22 21 38 38 H 1.48504 * 109.99926 * 58.68334 * 24 22 21 39 39 H 1.48499 * 109.99729 * 180.02562 * 24 22 21 40 40 H 1.08007 * 120.00017 * 180.27993 * 25 21 20 41 41 H 1.08997 * 113.61771 * 270.88268 * 26 9 8 42 42 H 1.09000 * 113.68617 * 139.99148 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 1.7320 2.0812 1.2892 5 9 0.4168 2.5579 1.2720 6 9 1.9072 1.2352 2.3895 7 9 2.6178 3.1598 1.3846 8 6 1.7186 2.1095 -1.2779 9 6 2.9933 1.4840 -1.8683 10 1 3.5887 2.1808 -2.4582 11 6 2.7483 0.1547 -2.5852 12 16 4.2889 -0.4068 -3.3611 13 8 4.6456 0.4491 -4.4379 14 8 5.2401 -0.7748 -2.3717 15 8 3.9184 -1.7207 -4.0337 16 6 3.1939 -1.5731 -5.1740 17 6 3.8388 -1.4565 -6.3960 18 6 3.0987 -1.3068 -7.5556 19 9 3.7254 -1.1925 -8.7470 20 6 1.7157 -1.2731 -7.4949 21 6 1.0724 -1.3894 -6.2766 22 6 -0.4328 -1.3529 -6.2138 23 8 -0.9160 -2.5753 -5.6534 24 14 -1.1211 -1.1421 -7.9322 25 6 1.8077 -1.5448 -5.1176 26 6 3.4890 1.3215 -0.4216 27 1 -0.3633 0.4733 -0.9122 28 1 -0.3633 -1.0267 0.0462 29 1 -0.3634 0.5532 0.8659 30 1 0.8052 1.8030 -1.7878 31 1 1.7854 3.1887 -1.1397 32 1 2.4120 -0.5904 -1.8642 33 1 1.9843 0.2902 -3.3507 34 1 4.9175 -1.4833 -6.4428 35 1 1.1388 -1.1558 -8.4003 36 1 -0.7503 -0.5169 -5.5905 37 1 -0.6705 -3.3632 -6.1575 38 1 -0.6693 -2.2586 -8.8009 39 1 -2.6048 -1.1040 -7.8838 40 1 1.3037 -1.6400 -4.1671 41 1 4.0399 2.1851 -0.0492 42 1 4.0053 0.3791 -0.2390 There are 70 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 70 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_8925532_17541816.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 12:56:17 Heat of formation + Delta-G solvation = -299.359671 kcal Electronic energy + Delta-G solvation = -38121.856685 eV Core-core repulsion = 32277.398723 eV Total energy + Delta-G solvation = -5844.457961 eV No. of doubly occupied orbitals = 70 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 401.073 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -51.22602 -50.19436 -48.77434 -48.65138 -42.48178 -41.64592 -40.01893 -38.40156 -37.74771 -37.53118 -37.26645 -32.96470 -32.16813 -31.54915 -28.60530 -27.97963 -27.44454 -27.02705 -25.18701 -23.76248 -23.52015 -21.80719 -20.85384 -20.08492 -19.68427 -19.53399 -19.35376 -19.06378 -18.96156 -18.32470 -17.87293 -17.58496 -17.43694 -17.26588 -16.94352 -16.66773 -16.41674 -16.35900 -15.96210 -15.86423 -15.72263 -15.57345 -15.42129 -15.37680 -15.13940 -14.92666 -14.84024 -14.76074 -14.49426 -14.38534 -14.22505 -14.18652 -13.50621 -13.43000 -13.41865 -13.35721 -13.34540 -13.28336 -13.15040 -13.10691 -12.55640 -12.46991 -12.42082 -12.26267 -12.07293 -11.62731 -11.03556 -10.97838 -10.47599 -10.21443 -5.19809 -1.30723 -0.44396 -0.43023 0.75609 0.97349 1.36409 1.47811 1.74043 1.83072 1.89380 2.31866 2.44319 2.53272 2.61769 2.71014 2.75749 2.90339 2.93908 3.09170 3.14528 3.25817 3.37115 3.38710 3.41838 3.54589 3.64778 3.75430 3.95168 3.99725 4.07882 4.09693 4.18659 4.21144 4.27427 4.32467 4.39339 4.45524 4.52584 4.55510 4.59396 4.61016 4.67672 4.69944 5.28778 5.51499 6.07402 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.008 3.992 2 O -0.332 6.332 3 C 0.041 3.959 4 C 0.438 3.562 5 F -0.181 7.181 6 F -0.173 7.173 7 F -0.174 7.174 8 C -0.136 4.136 9 C -0.091 4.091 10 H 0.112 0.888 11 C -0.643 4.643 12 S 2.591 3.409 13 O -0.943 6.943 14 O -0.913 6.913 15 O -0.659 6.659 16 C 0.098 3.902 17 C -0.123 4.123 18 C 0.133 3.867 19 F -0.120 7.120 20 C -0.135 4.135 21 C -0.072 4.072 22 C -0.075 4.075 23 O -0.525 6.525 24 Si 0.685 3.315 25 C -0.118 4.118 26 C -0.127 4.127 27 H 0.056 0.944 28 H 0.103 0.897 29 H 0.055 0.945 30 H 0.098 0.902 31 H 0.114 0.886 32 H 0.157 0.843 33 H 0.143 0.857 34 H 0.159 0.841 35 H 0.153 0.847 36 H 0.129 0.871 37 H 0.381 0.619 38 H -0.254 1.254 39 H -0.249 1.249 40 H 0.153 0.847 41 H 0.126 0.874 42 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.672 1.784 -3.658 6.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 O -0.250 6.250 3 C -0.001 4.001 4 C 0.383 3.617 5 F -0.162 7.162 6 F -0.154 7.154 7 F -0.155 7.155 8 C -0.174 4.174 9 C -0.111 4.111 10 H 0.130 0.870 11 C -0.769 4.769 12 S 2.686 3.314 13 O -0.942 6.942 14 O -0.911 6.911 15 O -0.617 6.617 16 C 0.057 3.943 17 C -0.144 4.144 18 C 0.114 3.886 19 F -0.098 7.098 20 C -0.154 4.154 21 C -0.073 4.073 22 C -0.185 4.185 23 O -0.331 6.331 24 Si 0.584 3.416 25 C -0.138 4.138 26 C -0.164 4.164 27 H 0.074 0.926 28 H 0.121 0.879 29 H 0.074 0.926 30 H 0.117 0.883 31 H 0.132 0.868 32 H 0.175 0.825 33 H 0.161 0.839 34 H 0.176 0.824 35 H 0.170 0.830 36 H 0.147 0.853 37 H 0.229 0.771 38 H -0.179 1.179 39 H -0.174 1.174 40 H 0.171 0.829 41 H 0.144 0.856 42 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -4.550 1.461 -3.951 6.200 hybrid contribution -0.531 -0.779 0.970 1.352 sum -5.080 0.682 -2.981 5.930 Atomic orbital electron populations 1.23176 0.79344 1.04548 1.01678 1.88054 1.21253 1.21867 1.93844 1.23934 0.99644 0.86472 0.90091 1.21122 0.74319 0.78727 0.87528 1.93190 1.37007 1.89192 1.96838 1.93229 1.94941 1.70497 1.56714 1.93186 1.68597 1.57157 1.96563 1.23586 0.99247 1.01063 0.93552 1.21702 0.99366 0.94091 0.95908 0.87016 1.30853 1.23994 1.08095 1.13945 1.05685 0.76962 0.73351 0.75391 1.93682 1.81680 1.67367 1.51426 1.93680 1.56290 1.80125 1.61005 1.85776 1.73607 1.59184 1.43159 1.17611 0.89062 1.05282 0.82359 1.21319 1.02732 1.00212 0.90094 1.17111 0.89916 1.00681 0.80914 1.91607 1.82427 1.92954 1.42822 1.21274 0.93014 1.01978 0.99154 1.19985 0.96961 0.98834 0.91538 1.25096 0.90070 0.90666 1.12673 1.86629 1.77576 1.15543 1.53363 0.94911 0.81658 0.90366 0.74623 1.21263 0.90853 1.00754 1.00916 1.23506 0.91724 1.07036 0.94172 0.92568 0.87881 0.92588 0.88328 0.86772 0.82477 0.83907 0.82378 0.82994 0.85328 0.77110 1.17857 1.17383 0.82900 0.85574 0.87215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 -0.02 10.44 101.05 1.05 1.03 16 2 O -0.33 0.23 8.35 -35.23 -0.29 -0.06 16 3 C 0.04 -0.05 0.85 -89.81 -0.08 -0.12 16 4 C 0.44 0.24 2.52 37.16 0.09 0.34 16 5 F -0.18 -0.12 15.26 2.25 0.03 -0.09 16 6 F -0.17 -0.42 17.09 2.25 0.04 -0.38 16 7 F -0.17 -0.11 15.82 2.25 0.04 -0.07 16 8 C -0.14 0.47 6.52 -25.92 -0.17 0.30 16 9 C -0.09 0.26 3.84 -89.81 -0.35 -0.08 16 10 H 0.11 -0.47 8.13 -51.93 -0.42 -0.90 16 11 C -0.64 1.96 5.06 37.16 0.19 2.15 16 12 S 2.59 1.19 5.16 -107.50 -0.55 0.64 16 13 O -0.94 -2.08 16.26 -67.04 -1.09 -3.17 16 14 O -0.91 -3.52 18.09 -67.03 -1.21 -4.73 16 15 O -0.66 -0.35 10.05 -51.74 -0.52 -0.87 16 16 C 0.10 -0.03 4.79 -39.23 -0.19 -0.22 16 17 C -0.12 -0.01 9.02 -39.37 -0.36 -0.36 16 18 C 0.13 -0.10 7.30 -39.44 -0.29 -0.39 16 19 F -0.12 -0.04 17.27 2.25 0.04 0.00 16 20 C -0.14 0.36 8.65 -39.49 -0.34 0.02 16 21 C -0.07 0.23 5.39 -104.66 -0.56 -0.34 16 22 C -0.08 0.30 2.82 36.00 0.10 0.40 16 23 O -0.52 1.27 12.76 -35.23 -0.45 0.82 16 24 Si 0.68 -2.61 29.79 -169.99 -5.06 -7.68 16 25 C -0.12 0.29 8.02 -39.42 -0.32 -0.02 16 26 C -0.13 0.20 6.89 -25.92 -0.18 0.03 16 27 H 0.06 -0.23 6.75 -51.93 -0.35 -0.58 16 28 H 0.10 -0.37 8.14 -51.92 -0.42 -0.79 16 29 H 0.06 -0.09 6.26 -51.93 -0.33 -0.42 16 30 H 0.10 -0.47 6.69 -51.93 -0.35 -0.81 16 31 H 0.11 -0.49 8.07 -51.93 -0.42 -0.91 16 32 H 0.16 -0.53 6.12 -51.92 -0.32 -0.85 16 33 H 0.14 -0.82 6.62 -51.92 -0.34 -1.16 16 34 H 0.16 -0.07 8.06 -52.48 -0.42 -0.49 16 35 H 0.15 -0.70 4.87 -52.49 -0.26 -0.95 16 36 H 0.13 -0.71 7.96 -51.93 -0.41 -1.13 16 37 H 0.38 -1.87 8.70 45.56 0.40 -1.48 16 38 H -0.25 0.44 7.11 56.52 0.40 0.84 16 39 H -0.25 0.09 7.11 56.52 0.40 0.49 16 40 H 0.15 -0.69 7.52 -52.48 -0.39 -1.08 16 41 H 0.13 -0.36 7.00 -51.93 -0.36 -0.72 16 42 H 0.11 -0.10 8.10 -51.93 -0.42 -0.52 16 LS Contribution 371.22 15.07 5.59 5.59 Total: 0.00 -9.89 371.22 -8.85 -18.74 By element: Atomic # 1 Polarization: -7.45 SS G_CDS: -4.02 Total: -11.47 kcal Atomic # 6 Polarization: 4.12 SS G_CDS: -1.38 Total: 2.74 kcal Atomic # 8 Polarization: -4.45 SS G_CDS: -3.57 Total: -8.02 kcal Atomic # 9 Polarization: -0.69 SS G_CDS: 0.15 Total: -0.54 kcal Atomic # 14 Polarization: -2.61 SS G_CDS: -5.06 Total: -7.68 kcal Atomic # 16 Polarization: 1.19 SS G_CDS: -0.55 Total: 0.64 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -9.89 -8.85 -18.74 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_8925532_17541816.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -280.624 kcal (2) G-P(sol) polarization free energy of solvation -9.888 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -290.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.848 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.736 kcal (6) G-S(sol) free energy of system = (1) + (5) -299.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds