Wall clock time and date at job start Mon Mar 8 2021 12:56:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42900 * 113.99908 * 2 1 4 4 C 1.53005 * 112.90599 * 66.16191 * 3 2 1 5 5 F 1.39904 * 109.46965 * 283.36836 * 4 3 2 6 6 F 1.39897 * 109.47252 * 43.37275 * 4 3 2 7 7 F 1.39900 * 109.46661 * 163.37122 * 4 3 2 8 8 C 1.53775 * 113.61196 * 294.90922 * 3 2 1 9 9 C 1.53780 * 87.08307 * 270.88190 * 8 3 2 10 10 H 1.08997 * 113.61148 * 220.01615 * 9 8 3 11 11 C 1.52999 * 113.61162 * 89.11744 * 9 8 3 12 12 S 1.81402 * 109.47241 * 174.99941 * 11 9 8 13 13 O 1.42097 * 110.54129 * 291.62667 * 12 11 9 14 14 O 1.42102 * 110.53981 * 68.37205 * 12 11 9 15 15 O 1.52190 * 104.45024 * 180.02562 * 12 11 9 16 16 C 1.35895 * 114.00413 * 75.00125 * 15 12 11 17 17 C 1.38667 * 120.04501 * 89.99633 * 16 15 12 18 18 C 1.38380 * 119.92385 * 179.97438 * 17 16 15 19 19 F 1.35098 * 120.00058 * 179.97438 * 18 17 16 20 20 C 1.38473 * 120.00502 * 0.02562 * 18 17 16 21 21 C 1.38254 * 120.08421 * 359.97438 * 20 18 17 22 22 C 1.50697 * 119.96003 * 180.02562 * 21 20 18 23 23 O 1.42898 * 109.47349 * 119.99776 * 22 21 20 24 24 Si 1.86307 * 109.47222 * 359.97438 * 22 21 20 25 25 C 1.38133 * 120.07741 * 359.74294 * 21 20 18 26 26 C 1.53779 * 87.07989 * 334.56759 * 9 8 3 27 27 H 1.09001 * 109.46960 * 62.58025 * 1 2 3 28 28 H 1.09008 * 109.46621 * 182.57414 * 1 2 3 29 29 H 1.08992 * 109.47478 * 302.57244 * 1 2 3 30 30 H 1.08999 * 113.61595 * 25.43760 * 8 3 2 31 31 H 1.09004 * 113.61620 * 156.33196 * 8 3 2 32 32 H 1.08999 * 109.47273 * 295.00323 * 11 9 8 33 33 H 1.09000 * 109.47228 * 54.99713 * 11 9 8 34 34 H 1.08007 * 120.03803 * 0.02562 * 17 16 15 35 35 H 1.08000 * 119.96005 * 179.97438 * 20 18 17 36 36 H 1.09003 * 109.46978 * 239.99531 * 22 21 20 37 37 H 0.96698 * 113.99968 * 299.99389 * 23 22 21 38 38 H 1.48504 * 109.99926 * 58.68334 * 24 22 21 39 39 H 1.48499 * 109.99729 * 180.02562 * 24 22 21 40 40 H 1.08007 * 120.00017 * 180.27993 * 25 21 20 41 41 H 1.08997 * 113.61771 * 270.88268 * 26 9 8 42 42 H 1.09000 * 113.68617 * 139.99148 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 1.7320 2.0812 1.2892 5 9 0.4168 2.5579 1.2720 6 9 1.9072 1.2352 2.3895 7 9 2.6178 3.1598 1.3846 8 6 1.7186 2.1095 -1.2779 9 6 2.9933 1.4840 -1.8683 10 1 3.5887 2.1808 -2.4582 11 6 2.7483 0.1547 -2.5852 12 16 4.2889 -0.4068 -3.3611 13 8 4.6456 0.4491 -4.4379 14 8 5.2401 -0.7748 -2.3717 15 8 3.9184 -1.7207 -4.0337 16 6 3.1939 -1.5731 -5.1740 17 6 3.8388 -1.4565 -6.3960 18 6 3.0987 -1.3068 -7.5556 19 9 3.7254 -1.1925 -8.7470 20 6 1.7157 -1.2731 -7.4949 21 6 1.0724 -1.3894 -6.2766 22 6 -0.4328 -1.3529 -6.2138 23 8 -0.9160 -2.5753 -5.6534 24 14 -1.1211 -1.1421 -7.9322 25 6 1.8077 -1.5448 -5.1176 26 6 3.4890 1.3215 -0.4216 27 1 -0.3633 0.4733 -0.9122 28 1 -0.3633 -1.0267 0.0462 29 1 -0.3634 0.5532 0.8659 30 1 0.8052 1.8030 -1.7878 31 1 1.7854 3.1887 -1.1397 32 1 2.4120 -0.5904 -1.8642 33 1 1.9843 0.2902 -3.3507 34 1 4.9175 -1.4833 -6.4428 35 1 1.1388 -1.1558 -8.4003 36 1 -0.7503 -0.5169 -5.5905 37 1 -0.6705 -3.3632 -6.1575 38 1 -0.6693 -2.2586 -8.8009 39 1 -2.6048 -1.1040 -7.8838 40 1 1.3037 -1.6400 -4.1671 41 1 4.0399 2.1851 -0.0492 42 1 4.0053 0.3791 -0.2390 There are 70 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 70 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_8925532_17541816.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 12:56:16 Heat of formation + Delta-G solvation = -300.692624 kcal Electronic energy + Delta-G solvation = -38121.914486 eV Core-core repulsion = 32277.398723 eV Total energy + Delta-G solvation = -5844.515762 eV No. of doubly occupied orbitals = 70 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 401.073 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -51.25261 -50.13523 -48.78575 -48.72388 -42.39560 -41.44286 -39.85357 -38.47836 -37.52425 -37.41008 -37.26886 -32.79670 -31.99927 -31.38911 -28.36617 -27.86511 -27.21296 -26.78375 -25.07063 -23.62988 -23.36253 -21.71177 -20.69270 -20.00038 -19.62829 -19.54910 -19.30710 -19.01816 -18.83366 -18.20283 -17.67783 -17.49598 -17.26041 -17.11532 -16.85467 -16.46933 -16.31709 -16.12153 -15.84514 -15.69659 -15.64013 -15.59563 -15.33759 -15.30403 -15.14712 -14.90841 -14.87711 -14.66383 -14.32402 -14.28635 -14.17865 -14.03226 -13.50332 -13.41264 -13.27132 -13.24055 -13.18249 -13.16606 -13.05810 -12.89980 -12.30445 -12.26263 -12.17581 -12.11825 -11.90396 -11.43235 -10.80575 -10.77883 -10.31896 -10.06608 -4.89722 -1.24337 -0.30404 -0.28389 0.82592 1.26741 1.53497 1.62271 1.99049 1.99830 2.08966 2.39401 2.55786 2.61602 2.71950 2.85626 2.89494 3.13031 3.20128 3.27717 3.31649 3.38550 3.52040 3.56161 3.60370 3.76342 3.83705 3.98503 4.23162 4.31667 4.33504 4.36239 4.44705 4.50728 4.57254 4.58775 4.62444 4.69533 4.70884 4.76537 4.77512 4.86308 4.89276 4.94137 5.43861 5.72875 6.46383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.000 4.000 2 O -0.345 6.345 3 C 0.037 3.963 4 C 0.431 3.569 5 F -0.182 7.182 6 F -0.189 7.189 7 F -0.177 7.177 8 C -0.125 4.125 9 C -0.095 4.095 10 H 0.126 0.874 11 C -0.621 4.621 12 S 2.588 3.412 13 O -0.968 6.968 14 O -0.960 6.960 15 O -0.667 6.667 16 C 0.080 3.920 17 C -0.143 4.143 18 C 0.119 3.881 19 F -0.131 7.131 20 C -0.126 4.126 21 C -0.063 4.063 22 C -0.071 4.071 23 O -0.539 6.539 24 Si 0.750 3.250 25 C -0.107 4.107 26 C -0.141 4.141 27 H 0.079 0.921 28 H 0.112 0.888 29 H 0.043 0.957 30 H 0.121 0.879 31 H 0.126 0.874 32 H 0.166 0.834 33 H 0.179 0.821 34 H 0.149 0.851 35 H 0.170 0.830 36 H 0.156 0.844 37 H 0.390 0.610 38 H -0.284 1.284 39 H -0.297 1.297 40 H 0.179 0.821 41 H 0.133 0.867 42 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.747 2.480 -4.017 8.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 O -0.263 6.263 3 C -0.006 4.006 4 C 0.377 3.623 5 F -0.163 7.163 6 F -0.171 7.171 7 F -0.158 7.158 8 C -0.163 4.163 9 C -0.115 4.115 10 H 0.144 0.856 11 C -0.751 4.751 12 S 2.688 3.312 13 O -0.967 6.967 14 O -0.958 6.958 15 O -0.625 6.625 16 C 0.038 3.962 17 C -0.164 4.164 18 C 0.100 3.900 19 F -0.109 7.109 20 C -0.145 4.145 21 C -0.064 4.064 22 C -0.181 4.181 23 O -0.347 6.347 24 Si 0.656 3.344 25 C -0.127 4.127 26 C -0.178 4.178 27 H 0.098 0.902 28 H 0.130 0.870 29 H 0.062 0.938 30 H 0.139 0.861 31 H 0.144 0.856 32 H 0.184 0.816 33 H 0.197 0.803 34 H 0.167 0.833 35 H 0.187 0.813 36 H 0.173 0.827 37 H 0.240 0.760 38 H -0.210 1.210 39 H -0.225 1.225 40 H 0.197 0.803 41 H 0.151 0.849 42 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -6.566 2.147 -4.327 8.151 hybrid contribution 0.003 -1.029 1.076 1.489 sum -6.563 1.118 -3.251 7.409 Atomic orbital electron populations 1.23353 0.78488 1.05321 1.02326 1.88043 1.22273 1.22137 1.93853 1.24096 0.99902 0.86667 0.89900 1.21543 0.74182 0.78711 0.87879 1.93182 1.37098 1.89227 1.96843 1.93190 1.95039 1.71025 1.57818 1.93173 1.68695 1.57339 1.96606 1.23653 0.99617 1.01407 0.91598 1.21812 1.00078 0.94354 0.95227 0.85562 1.30686 1.21538 1.08225 1.14625 1.05585 0.78025 0.72906 0.74688 1.93642 1.82967 1.67775 1.52287 1.93619 1.59359 1.80908 1.61946 1.85742 1.74149 1.59068 1.43581 1.17839 0.89963 1.06583 0.81791 1.21422 1.02732 1.01252 0.91018 1.17241 0.90679 1.01777 0.80311 1.91575 1.82796 1.93207 1.43349 1.21485 0.92187 1.00590 1.00240 1.20078 0.97357 0.97971 0.90997 1.25176 0.88991 0.91126 1.12761 1.86615 1.77765 1.16353 1.53957 0.94183 0.78019 0.88673 0.73570 1.21531 0.89723 0.99210 1.02278 1.23653 0.91786 1.06789 0.95567 0.90214 0.86967 0.93815 0.86108 0.85615 0.81622 0.80338 0.83320 0.81291 0.82676 0.76034 1.21024 1.22499 0.80337 0.84901 0.88530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 0.00 10.44 113.37 1.18 1.18 16 2 O -0.34 0.87 8.35 -148.98 -1.24 -0.38 16 3 C 0.04 -0.12 0.85 -10.27 -0.01 -0.13 16 4 C 0.43 0.43 2.52 71.98 0.18 0.61 16 5 F -0.18 -0.15 15.26 44.97 0.69 0.54 16 6 F -0.19 -1.08 17.09 44.97 0.77 -0.32 16 7 F -0.18 -0.23 15.82 44.97 0.71 0.48 16 8 C -0.12 1.17 6.52 31.12 0.20 1.37 16 9 C -0.10 0.70 3.84 -10.27 -0.04 0.66 16 10 H 0.13 -1.26 8.13 -2.39 -0.02 -1.28 16 11 C -0.62 4.90 5.06 71.98 0.36 5.26 16 12 S 2.59 4.02 5.16 -56.49 -0.29 3.73 16 13 O -0.97 -5.19 16.26 -118.57 -1.93 -7.11 16 14 O -0.96 -9.35 18.09 -118.57 -2.15 -11.49 16 15 O -0.67 -1.15 10.05 -61.46 -0.62 -1.77 16 16 C 0.08 -0.06 4.79 22.50 0.11 0.05 16 17 C -0.14 -0.17 9.02 22.41 0.20 0.04 16 18 C 0.12 -0.14 7.30 22.36 0.16 0.03 16 19 F -0.13 -0.20 17.27 44.97 0.78 0.57 16 20 C -0.13 0.83 8.65 22.33 0.19 1.02 16 21 C -0.06 0.54 5.39 -19.89 -0.11 0.44 16 22 C -0.07 0.76 2.82 71.23 0.20 0.96 16 23 O -0.54 3.97 12.76 -148.98 -1.90 2.07 16 24 Si 0.75 -6.68 29.79 68.60 2.04 -4.63 16 25 C -0.11 0.77 8.02 22.37 0.18 0.95 16 26 C -0.14 0.46 6.89 31.12 0.21 0.68 16 27 H 0.08 -0.92 6.75 -2.39 -0.02 -0.94 16 28 H 0.11 -0.99 8.14 -2.38 -0.02 -1.01 16 29 H 0.04 -0.18 6.26 -2.39 -0.01 -0.19 16 30 H 0.12 -1.65 6.69 -2.39 -0.02 -1.67 16 31 H 0.13 -1.42 8.07 -2.38 -0.02 -1.43 16 32 H 0.17 -1.44 6.12 -2.39 -0.01 -1.45 16 33 H 0.18 -2.72 6.62 -2.39 -0.02 -2.73 16 34 H 0.15 0.27 8.06 -2.91 -0.02 0.24 16 35 H 0.17 -1.79 4.87 -2.91 -0.01 -1.81 16 36 H 0.16 -2.41 7.96 -2.39 -0.02 -2.43 16 37 H 0.39 -4.58 8.70 -74.06 -0.64 -5.22 16 38 H -0.28 1.14 7.11 99.48 0.71 1.85 16 39 H -0.30 0.18 7.11 99.48 0.71 0.89 16 40 H 0.18 -2.25 7.52 -2.91 -0.02 -2.28 16 41 H 0.13 -0.71 7.00 -2.39 -0.02 -0.73 16 42 H 0.10 -0.06 8.10 -2.39 -0.02 -0.08 16 Total: 0.00 -25.90 371.22 0.41 -25.49 By element: Atomic # 1 Polarization: -20.80 SS G_CDS: 0.52 Total: -20.28 kcal Atomic # 6 Polarization: 10.07 SS G_CDS: 3.04 Total: 13.11 kcal Atomic # 8 Polarization: -10.85 SS G_CDS: -7.84 Total: -18.69 kcal Atomic # 9 Polarization: -1.67 SS G_CDS: 2.94 Total: 1.28 kcal Atomic # 14 Polarization: -6.68 SS G_CDS: 2.04 Total: -4.63 kcal Atomic # 16 Polarization: 4.02 SS G_CDS: -0.29 Total: 3.73 kcal Total: -25.90 0.41 -25.49 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_8925532_17541816.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -275.204 kcal (2) G-P(sol) polarization free energy of solvation -25.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -301.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.415 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -25.488 kcal (6) G-S(sol) free energy of system = (1) + (5) -300.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds