Wall clock time and date at job start Mon Mar 8 2021 12:55:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86303 * 1 3 3 C 1.86299 * 109.47129 * 2 1 4 4 C 1.86302 * 109.47079 * 119.99832 * 2 1 3 5 5 N 1.46499 * 109.47220 * 300.00050 * 4 2 1 6 6 S 1.65597 * 119.99926 * 180.27822 * 5 4 2 7 7 O 1.42096 * 106.40195 * 178.26439 * 6 5 4 8 8 O 1.42108 * 106.40105 * 311.18495 * 6 5 4 9 9 C 1.76199 * 107.22117 * 64.72196 * 6 5 4 10 10 C 1.38235 * 120.00343 * 269.72948 * 9 6 5 11 11 C 1.38234 * 120.00456 * 179.76677 * 10 9 6 12 12 C 1.38242 * 119.99585 * 0.49870 * 11 10 9 13 13 C 1.50696 * 119.99611 * 179.72261 * 12 11 10 14 14 O 1.42900 * 109.47498 * 245.02408 * 13 12 11 15 15 Si 1.86297 * 109.47617 * 5.03362 * 13 12 11 16 16 H 1.48500 * 109.47354 * 59.99123 * 15 13 12 17 17 H 1.48499 * 109.47425 * 179.97438 * 15 13 12 18 18 H 1.48501 * 109.46700 * 299.99598 * 15 13 12 19 19 C 1.38234 * 120.00092 * 359.75730 * 12 11 10 20 20 C 1.38234 * 119.99811 * 359.97438 * 19 12 11 21 21 C 1.86795 * 109.47110 * 239.99976 * 2 1 3 22 22 C 1.38235 * 119.99976 * 149.72463 * 21 2 1 23 23 C 1.38235 * 119.99851 * 179.76584 * 22 21 2 24 24 C 1.38238 * 120.00222 * 0.50891 * 23 22 21 25 25 C 1.38240 * 119.99741 * 359.74635 * 24 23 22 26 26 C 1.38231 * 119.99807 * 359.97438 * 25 24 23 27 27 H 1.09005 * 109.46812 * 300.00062 * 1 2 3 28 28 H 1.08990 * 109.46980 * 59.99889 * 1 2 3 29 29 H 1.08998 * 109.46977 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.47315 * 180.02562 * 3 2 1 31 31 H 1.09004 * 109.47307 * 299.99994 * 3 2 1 32 32 H 1.08996 * 109.47454 * 60.00002 * 3 2 1 33 33 H 1.09009 * 109.46695 * 179.97438 * 4 2 1 34 34 H 1.08998 * 109.46860 * 60.00403 * 4 2 1 35 35 H 0.97001 * 119.99790 * 359.97438 * 5 4 2 36 36 H 1.08004 * 119.99790 * 0.02562 * 10 9 6 37 37 H 1.08000 * 120.00645 * 180.23183 * 11 10 9 38 38 H 1.09007 * 109.46386 * 125.03147 * 13 12 11 39 39 H 0.96705 * 113.99480 * 60.00863 * 14 13 12 40 40 H 1.07993 * 120.00217 * 179.97438 * 19 12 11 41 41 H 1.08007 * 120.00126 * 179.97438 * 20 19 12 42 42 H 1.07997 * 119.99969 * 0.02562 * 22 21 2 43 43 H 1.08003 * 120.00269 * 180.23214 * 23 22 21 44 44 H 1.08000 * 120.00255 * 179.72463 * 24 23 22 45 45 H 1.07998 * 120.00179 * 179.97438 * 25 24 23 46 46 H 1.08001 * 119.99909 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4840 1.7564 0.0000 4 6 2.4840 -0.8782 1.5212 5 7 1.9957 -0.1876 2.7173 6 16 2.4014 -0.7493 4.2213 7 8 1.8162 0.1471 5.1558 8 8 2.1369 -2.1455 4.2130 9 6 4.1466 -0.5746 4.3901 10 6 4.9845 -1.6063 4.0101 11 6 6.3539 -1.4674 4.1380 12 6 6.8849 -0.3007 4.6557 13 6 8.3774 -0.1518 4.8009 14 8 8.7138 -0.0536 6.1863 15 14 9.2249 -1.6361 4.0597 16 1 8.8753 -1.7381 2.6200 17 1 10.6957 -1.4890 4.2023 18 1 8.7790 -2.8642 4.7655 19 6 6.0468 0.7289 5.0407 20 6 4.6777 0.5921 4.9076 21 6 2.4857 -0.8806 -1.5252 22 6 3.6908 -0.5114 -2.0928 23 6 4.1539 -1.1663 -3.2187 24 6 3.4069 -2.1833 -3.7831 25 6 2.1991 -2.5490 -3.2185 26 6 1.7389 -1.8979 -2.0893 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 3.5740 1.7565 -0.0005 31 1 2.1207 2.2703 -0.8900 32 1 2.1207 2.2703 0.8899 33 1 3.5741 -0.8786 1.5209 34 1 2.1207 -1.9059 1.5211 35 1 1.4383 0.6013 2.6283 36 1 4.5695 -2.5193 3.6092 37 1 7.0088 -2.2720 3.8376 38 1 8.7046 0.7498 4.2829 39 1 8.4516 -0.8230 6.7101 40 1 6.4615 1.6401 5.4455 41 1 4.0227 1.3964 5.2088 42 1 4.2725 0.2859 -1.6543 43 1 5.0973 -0.8804 -3.6601 44 1 3.7665 -2.6920 -4.6653 45 1 1.6153 -3.3432 -3.6596 46 1 0.7951 -2.1833 -1.6484 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_8987560_13421422.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 12:55:12 Heat of formation + Delta-G solvation = -94.888757 kcal Electronic energy + Delta-G solvation = -28051.929807 eV Core-core repulsion = 24156.745221 eV Total energy + Delta-G solvation = -3895.184586 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 365.108 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -40.74890 -39.74711 -38.19427 -37.80082 -36.79918 -36.04904 -33.06805 -32.26151 -31.85155 -31.66317 -29.29792 -28.58643 -27.29015 -26.66265 -24.16598 -23.30962 -23.05307 -23.02044 -20.67990 -19.31517 -18.70166 -18.24869 -18.08670 -17.40542 -16.92742 -16.52409 -16.17430 -16.01466 -15.95910 -15.70330 -15.40395 -15.23457 -15.07465 -14.60805 -14.47405 -14.35252 -14.31049 -14.13403 -14.08953 -13.87560 -13.63051 -13.42746 -13.38812 -13.25005 -13.04621 -12.97723 -12.78309 -12.68351 -12.56616 -12.29634 -12.01895 -11.89421 -11.78410 -11.18869 -11.17528 -10.94306 -10.68956 -10.64415 -10.40598 -10.19267 -9.81158 -9.79207 -0.68481 -0.36464 0.13319 0.28428 0.51166 0.96405 1.29182 1.36834 1.45422 1.55031 1.64006 1.77236 2.00415 2.25187 2.33581 2.78256 2.93224 3.24148 3.29339 3.42813 3.69761 3.75448 4.01625 4.09186 4.11515 4.19381 4.25169 4.26870 4.33014 4.40482 4.51592 4.53976 4.56447 4.57641 4.60354 4.62550 4.67054 4.73581 4.76152 4.89924 4.93293 4.99869 5.11799 5.18087 5.33169 5.39734 5.53004 5.55235 5.61907 5.64144 5.82699 6.11534 6.34896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.452 4.452 2 Si 1.083 2.917 3 C -0.451 4.451 4 C -0.191 4.191 5 N -1.093 6.093 6 S 2.689 3.311 7 O -0.958 6.958 8 O -0.952 6.952 9 C -0.672 4.672 10 C -0.015 4.015 11 C -0.148 4.148 12 C -0.065 4.065 13 C -0.089 4.089 14 O -0.534 6.534 15 Si 0.947 3.053 16 H -0.247 1.247 17 H -0.250 1.250 18 H -0.249 1.249 19 C -0.111 4.111 20 C -0.017 4.017 21 C -0.377 4.377 22 C -0.087 4.087 23 C -0.133 4.133 24 C -0.107 4.107 25 C -0.132 4.132 26 C -0.086 4.086 27 H 0.074 0.926 28 H 0.076 0.924 29 H 0.075 0.925 30 H 0.073 0.927 31 H 0.076 0.924 32 H 0.074 0.926 33 H 0.080 0.920 34 H 0.091 0.909 35 H 0.415 0.585 36 H 0.145 0.855 37 H 0.131 0.869 38 H 0.124 0.876 39 H 0.379 0.621 40 H 0.139 0.861 41 H 0.144 0.856 42 H 0.120 0.880 43 H 0.119 0.881 44 H 0.120 0.880 45 H 0.120 0.880 46 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.782 1.255 -4.238 4.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.560 4.560 2 Si 1.272 2.728 3 C -0.559 4.559 4 C -0.363 4.363 5 N -0.854 5.854 6 S 2.778 3.222 7 O -0.948 6.948 8 O -0.942 6.942 9 C -0.759 4.759 10 C -0.034 4.034 11 C -0.167 4.167 12 C -0.065 4.065 13 C -0.200 4.200 14 O -0.339 6.339 15 Si 0.769 3.231 16 H -0.171 1.171 17 H -0.173 1.173 18 H -0.172 1.172 19 C -0.130 4.130 20 C -0.036 4.036 21 C -0.420 4.420 22 C -0.105 4.105 23 C -0.151 4.151 24 C -0.125 4.125 25 C -0.150 4.150 26 C -0.104 4.104 27 H 0.094 0.906 28 H 0.095 0.905 29 H 0.094 0.906 30 H 0.092 0.908 31 H 0.095 0.905 32 H 0.094 0.906 33 H 0.098 0.902 34 H 0.109 0.891 35 H 0.250 0.750 36 H 0.162 0.838 37 H 0.148 0.852 38 H 0.142 0.858 39 H 0.226 0.774 40 H 0.157 0.843 41 H 0.162 0.838 42 H 0.138 0.862 43 H 0.137 0.863 44 H 0.138 0.862 45 H 0.138 0.862 46 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 2.027 0.544 -4.167 4.666 hybrid contribution 0.230 0.202 -0.096 0.321 sum 2.257 0.745 -4.263 4.881 Atomic orbital electron populations 1.26133 1.19599 1.05207 1.05082 0.77983 0.67140 0.65943 0.61752 1.26130 1.06606 1.18047 1.05120 1.26167 1.04097 1.04610 1.01432 1.54926 1.65736 1.43176 1.21546 1.02171 0.73574 0.73968 0.72485 1.93610 1.75612 1.65791 1.59760 1.93600 1.83353 1.31347 1.85904 1.31016 1.26890 1.02540 1.15444 1.20909 0.93085 0.96764 0.92649 1.21216 0.95878 0.97668 1.01893 1.20711 0.96759 0.93882 0.95164 1.25141 0.93240 1.13115 0.88489 1.86550 1.82940 1.46581 1.17809 0.85696 0.80511 0.76374 0.80508 1.17085 1.17333 1.17245 1.21190 0.92844 0.99334 0.99644 1.21027 0.95988 0.95056 0.91565 1.27154 0.99057 1.03555 1.12251 1.21094 0.95662 0.98426 0.95322 1.21278 1.00018 0.96908 0.96905 1.21264 0.94854 0.96924 0.99447 1.21291 0.96631 1.00276 0.96830 1.21122 0.99078 0.94970 0.95228 0.90640 0.90515 0.90631 0.90820 0.90489 0.90644 0.90154 0.89092 0.74956 0.83777 0.85171 0.85837 0.77383 0.84326 0.83784 0.86184 0.86275 0.86207 0.86198 0.86036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.45 1.41 8.53 101.05 0.86 2.27 16 2 Si 1.08 -4.22 10.93 -169.99 -1.86 -6.08 16 3 C -0.45 1.63 8.52 101.05 0.86 2.49 16 4 C -0.19 0.53 5.23 59.85 0.31 0.84 16 5 N -1.09 2.11 5.79 33.52 0.19 2.31 16 6 S 2.69 3.60 5.74 -107.50 -0.62 2.98 16 7 O -0.96 -3.80 17.28 -57.17 -0.99 -4.78 16 8 O -0.95 -4.05 17.02 -57.17 -0.97 -5.02 16 9 C -0.67 -0.43 5.94 -39.58 -0.24 -0.67 16 10 C -0.01 0.00 9.52 -39.58 -0.38 -0.38 16 11 C -0.15 0.05 8.67 -39.58 -0.34 -0.29 16 12 C -0.06 0.03 5.35 -104.62 -0.56 -0.53 16 13 C -0.09 0.14 2.80 36.00 0.10 0.24 16 14 O -0.53 0.32 12.83 -35.23 -0.45 -0.13 16 15 Si 0.95 -1.47 25.14 -169.99 -4.27 -5.74 16 16 H -0.25 0.29 7.11 56.52 0.40 0.69 16 17 H -0.25 0.01 7.11 56.52 0.40 0.41 16 18 H -0.25 0.32 7.04 56.52 0.40 0.71 16 19 C -0.11 0.03 9.69 -39.58 -0.38 -0.35 16 20 C -0.02 0.00 9.52 -39.58 -0.38 -0.38 16 21 C -0.38 0.51 4.59 -39.58 -0.18 0.33 16 22 C -0.09 0.07 9.29 -39.58 -0.37 -0.30 16 23 C -0.13 0.01 10.05 -39.58 -0.40 -0.39 16 24 C -0.11 -0.02 10.05 -39.58 -0.40 -0.42 16 25 C -0.13 -0.01 10.05 -39.58 -0.40 -0.41 16 26 C -0.09 0.05 9.29 -39.58 -0.37 -0.32 16 27 H 0.07 -0.27 7.96 -51.93 -0.41 -0.68 16 28 H 0.08 -0.23 7.96 -51.93 -0.41 -0.64 16 29 H 0.07 -0.23 7.69 -51.93 -0.40 -0.63 16 30 H 0.07 -0.28 7.68 -51.93 -0.40 -0.68 16 31 H 0.08 -0.25 7.96 -51.93 -0.41 -0.66 16 32 H 0.07 -0.31 7.96 -51.93 -0.41 -0.73 16 33 H 0.08 -0.31 7.96 -51.92 -0.41 -0.72 16 34 H 0.09 -0.24 7.93 -51.93 -0.41 -0.65 16 35 H 0.41 -1.71 7.93 -34.47 -0.27 -1.98 16 36 H 0.14 -0.15 7.61 -52.48 -0.40 -0.55 16 37 H 0.13 -0.24 4.87 -52.49 -0.26 -0.50 16 38 H 0.12 -0.33 7.96 -51.93 -0.41 -0.74 16 39 H 0.38 -1.36 8.70 45.56 0.40 -0.96 16 40 H 0.14 -0.22 8.06 -52.49 -0.42 -0.64 16 41 H 0.14 -0.17 7.62 -52.48 -0.40 -0.57 16 42 H 0.12 -0.34 7.42 -52.49 -0.39 -0.73 16 43 H 0.12 -0.18 8.06 -52.48 -0.42 -0.61 16 44 H 0.12 -0.15 8.06 -52.49 -0.42 -0.57 16 45 H 0.12 -0.16 8.06 -52.49 -0.42 -0.58 16 46 H 0.12 -0.30 7.43 -52.49 -0.39 -0.69 16 LS Contribution 397.97 15.07 6.00 6.00 Total: 0.00 -10.30 397.97 -11.11 -21.41 By element: Atomic # 1 Polarization: -6.80 SS G_CDS: -5.89 Total: -12.69 kcal Atomic # 6 Polarization: 3.99 SS G_CDS: -2.25 Total: 1.74 kcal Atomic # 7 Polarization: 2.11 SS G_CDS: 0.19 Total: 2.31 kcal Atomic # 8 Polarization: -7.52 SS G_CDS: -2.41 Total: -9.93 kcal Atomic # 14 Polarization: -5.68 SS G_CDS: -6.13 Total: -11.81 kcal Atomic # 16 Polarization: 3.60 SS G_CDS: -0.62 Total: 2.98 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -10.30 -11.11 -21.41 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_8987560_13421422.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.477 kcal (2) G-P(sol) polarization free energy of solvation -10.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.412 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds