Wall clock time and date at job start Mon Mar 8 2021 12:55:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86303 * 1 3 3 C 1.86299 * 109.47129 * 2 1 4 4 C 1.86302 * 109.47079 * 119.99832 * 2 1 3 5 5 N 1.46499 * 109.47220 * 300.00050 * 4 2 1 6 6 S 1.65597 * 119.99926 * 180.27822 * 5 4 2 7 7 O 1.42096 * 106.40195 * 178.26439 * 6 5 4 8 8 O 1.42108 * 106.40105 * 311.18495 * 6 5 4 9 9 C 1.76199 * 107.22117 * 64.72196 * 6 5 4 10 10 C 1.38235 * 120.00343 * 269.72948 * 9 6 5 11 11 C 1.38234 * 120.00456 * 179.76677 * 10 9 6 12 12 C 1.38242 * 119.99585 * 0.49870 * 11 10 9 13 13 C 1.50696 * 119.99611 * 179.72261 * 12 11 10 14 14 O 1.42900 * 109.47498 * 245.02408 * 13 12 11 15 15 Si 1.86297 * 109.47617 * 5.03362 * 13 12 11 16 16 H 1.48500 * 109.47354 * 59.99123 * 15 13 12 17 17 H 1.48499 * 109.47425 * 179.97438 * 15 13 12 18 18 H 1.48501 * 109.46700 * 299.99598 * 15 13 12 19 19 C 1.38234 * 120.00092 * 359.75730 * 12 11 10 20 20 C 1.38234 * 119.99811 * 359.97438 * 19 12 11 21 21 C 1.86795 * 109.47110 * 239.99976 * 2 1 3 22 22 C 1.38235 * 119.99976 * 149.72463 * 21 2 1 23 23 C 1.38235 * 119.99851 * 179.76584 * 22 21 2 24 24 C 1.38238 * 120.00222 * 0.50891 * 23 22 21 25 25 C 1.38240 * 119.99741 * 359.74635 * 24 23 22 26 26 C 1.38231 * 119.99807 * 359.97438 * 25 24 23 27 27 H 1.09005 * 109.46812 * 300.00062 * 1 2 3 28 28 H 1.08990 * 109.46980 * 59.99889 * 1 2 3 29 29 H 1.08998 * 109.46977 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.47315 * 180.02562 * 3 2 1 31 31 H 1.09004 * 109.47307 * 299.99994 * 3 2 1 32 32 H 1.08996 * 109.47454 * 60.00002 * 3 2 1 33 33 H 1.09009 * 109.46695 * 179.97438 * 4 2 1 34 34 H 1.08998 * 109.46860 * 60.00403 * 4 2 1 35 35 H 0.97001 * 119.99790 * 359.97438 * 5 4 2 36 36 H 1.08004 * 119.99790 * 0.02562 * 10 9 6 37 37 H 1.08000 * 120.00645 * 180.23183 * 11 10 9 38 38 H 1.09007 * 109.46386 * 125.03147 * 13 12 11 39 39 H 0.96705 * 113.99480 * 60.00863 * 14 13 12 40 40 H 1.07993 * 120.00217 * 179.97438 * 19 12 11 41 41 H 1.08007 * 120.00126 * 179.97438 * 20 19 12 42 42 H 1.07997 * 119.99969 * 0.02562 * 22 21 2 43 43 H 1.08003 * 120.00269 * 180.23214 * 23 22 21 44 44 H 1.08000 * 120.00255 * 179.72463 * 24 23 22 45 45 H 1.07998 * 120.00179 * 179.97438 * 25 24 23 46 46 H 1.08001 * 119.99909 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4840 1.7564 0.0000 4 6 2.4840 -0.8782 1.5212 5 7 1.9957 -0.1876 2.7173 6 16 2.4014 -0.7493 4.2213 7 8 1.8162 0.1471 5.1558 8 8 2.1369 -2.1455 4.2130 9 6 4.1466 -0.5746 4.3901 10 6 4.9845 -1.6063 4.0101 11 6 6.3539 -1.4674 4.1380 12 6 6.8849 -0.3007 4.6557 13 6 8.3774 -0.1518 4.8009 14 8 8.7138 -0.0536 6.1863 15 14 9.2249 -1.6361 4.0597 16 1 8.8753 -1.7381 2.6200 17 1 10.6957 -1.4890 4.2023 18 1 8.7790 -2.8642 4.7655 19 6 6.0468 0.7289 5.0407 20 6 4.6777 0.5921 4.9076 21 6 2.4857 -0.8806 -1.5252 22 6 3.6908 -0.5114 -2.0928 23 6 4.1539 -1.1663 -3.2187 24 6 3.4069 -2.1833 -3.7831 25 6 2.1991 -2.5490 -3.2185 26 6 1.7389 -1.8979 -2.0893 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 3.5740 1.7565 -0.0005 31 1 2.1207 2.2703 -0.8900 32 1 2.1207 2.2703 0.8899 33 1 3.5741 -0.8786 1.5209 34 1 2.1207 -1.9059 1.5211 35 1 1.4383 0.6013 2.6283 36 1 4.5695 -2.5193 3.6092 37 1 7.0088 -2.2720 3.8376 38 1 8.7046 0.7498 4.2829 39 1 8.4516 -0.8230 6.7101 40 1 6.4615 1.6401 5.4455 41 1 4.0227 1.3964 5.2088 42 1 4.2725 0.2859 -1.6543 43 1 5.0973 -0.8804 -3.6601 44 1 3.7665 -2.6920 -4.6653 45 1 1.6153 -3.3432 -3.6596 46 1 0.7951 -2.1833 -1.6484 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_8987560_13421422.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 12:55:11 Heat of formation + Delta-G solvation = -93.233546 kcal Electronic energy + Delta-G solvation = -28051.858032 eV Core-core repulsion = 24156.745221 eV Total energy + Delta-G solvation = -3895.112811 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 365.108 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -40.68906 -39.63726 -38.38432 -37.70734 -36.99773 -35.93079 -33.01819 -32.20983 -31.74737 -31.55417 -29.00206 -28.28768 -27.21148 -26.49324 -24.11349 -23.21348 -22.99307 -22.93309 -20.69578 -19.29323 -18.71897 -18.22620 -17.98221 -17.39406 -16.86909 -16.41806 -16.09727 -15.94377 -15.86928 -15.61513 -15.42390 -15.16352 -14.91495 -14.54325 -14.28772 -14.22231 -14.15970 -14.05653 -13.86674 -13.83151 -13.50827 -13.29547 -13.21291 -13.16233 -13.12710 -13.07805 -12.64422 -12.61791 -12.52749 -12.20400 -11.91326 -11.88476 -11.70686 -10.96134 -10.91774 -10.79427 -10.59458 -10.49752 -10.33505 -10.15013 -9.74201 -9.69604 -0.71429 -0.37394 0.17492 0.38397 0.58055 1.09793 1.41446 1.47539 1.66022 1.77824 1.87656 1.95317 2.09702 2.35651 2.50649 2.73474 3.01529 3.24980 3.40722 3.53621 3.76544 3.82486 4.13674 4.17148 4.22558 4.31578 4.32954 4.45433 4.46980 4.59456 4.63429 4.63908 4.74669 4.83300 4.85423 4.88702 4.90978 4.92269 4.94066 4.98101 4.99938 5.09955 5.22720 5.24120 5.59115 5.61228 5.66764 5.68457 5.69916 5.74470 6.07207 6.22314 6.59727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.469 4.469 2 Si 1.151 2.849 3 C -0.461 4.461 4 C -0.210 4.210 5 N -1.082 6.082 6 S 2.701 3.299 7 O -0.988 6.988 8 O -0.987 6.987 9 C -0.676 4.676 10 C -0.026 4.026 11 C -0.154 4.154 12 C -0.065 4.065 13 C -0.085 4.085 14 O -0.548 6.548 15 Si 0.974 3.026 16 H -0.250 1.250 17 H -0.273 1.273 18 H -0.253 1.253 19 C -0.116 4.116 20 C -0.025 4.025 21 C -0.388 4.388 22 C -0.098 4.098 23 C -0.150 4.150 24 C -0.126 4.126 25 C -0.151 4.151 26 C -0.101 4.101 27 H 0.080 0.920 28 H 0.075 0.925 29 H 0.073 0.927 30 H 0.078 0.922 31 H 0.075 0.925 32 H 0.083 0.917 33 H 0.094 0.906 34 H 0.089 0.911 35 H 0.426 0.574 36 H 0.152 0.848 37 H 0.143 0.857 38 H 0.136 0.864 39 H 0.390 0.610 40 H 0.151 0.849 41 H 0.154 0.846 42 H 0.140 0.860 43 H 0.129 0.871 44 H 0.126 0.874 45 H 0.127 0.873 46 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.193 2.104 -4.224 5.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.577 4.577 2 Si 1.335 2.665 3 C -0.570 4.570 4 C -0.381 4.381 5 N -0.846 5.846 6 S 2.792 3.208 7 O -0.979 6.979 8 O -0.976 6.976 9 C -0.764 4.764 10 C -0.045 4.045 11 C -0.173 4.173 12 C -0.066 4.066 13 C -0.196 4.196 14 O -0.355 6.355 15 Si 0.798 3.202 16 H -0.174 1.174 17 H -0.198 1.198 18 H -0.176 1.176 19 C -0.135 4.135 20 C -0.045 4.045 21 C -0.429 4.429 22 C -0.116 4.116 23 C -0.168 4.168 24 C -0.144 4.144 25 C -0.169 4.169 26 C -0.119 4.119 27 H 0.099 0.901 28 H 0.094 0.906 29 H 0.093 0.907 30 H 0.097 0.903 31 H 0.094 0.906 32 H 0.102 0.898 33 H 0.112 0.888 34 H 0.107 0.893 35 H 0.265 0.735 36 H 0.169 0.831 37 H 0.161 0.839 38 H 0.154 0.846 39 H 0.239 0.761 40 H 0.169 0.831 41 H 0.171 0.829 42 H 0.158 0.842 43 H 0.147 0.853 44 H 0.144 0.856 45 H 0.145 0.855 46 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 2.407 1.373 -4.158 4.997 hybrid contribution 0.151 -0.082 -0.132 0.217 sum 2.558 1.291 -4.290 5.159 Atomic orbital electron populations 1.26320 1.20703 1.05269 1.05364 0.76975 0.65616 0.64780 0.59179 1.26227 1.07107 1.18116 1.05503 1.26529 1.05315 1.04926 1.01291 1.54625 1.65796 1.43589 1.20554 1.01536 0.73653 0.72895 0.72760 1.93560 1.76602 1.66212 1.61486 1.93553 1.84148 1.33317 1.86617 1.30849 1.26106 1.03117 1.16358 1.21099 0.93477 0.97026 0.92885 1.21412 0.95853 0.98184 1.01818 1.20862 0.97297 0.93709 0.94682 1.25166 0.92462 1.13691 0.88258 1.86521 1.83081 1.47611 1.18300 0.85310 0.78674 0.76111 0.80071 1.17403 1.19786 1.17647 1.21381 0.92682 0.99905 0.99495 1.21222 0.96516 0.95197 0.91517 1.27750 0.98770 1.03253 1.13113 1.21442 0.96117 0.98860 0.95189 1.21551 1.00600 0.97134 0.97517 1.21481 0.95280 0.97538 1.00089 1.21542 0.96975 1.00914 0.97485 1.21442 0.99922 0.95276 0.95258 0.90052 0.90580 0.90747 0.90285 0.90610 0.89812 0.88802 0.89259 0.73548 0.83066 0.83939 0.84647 0.76069 0.83125 0.82873 0.84210 0.85328 0.85558 0.85514 0.84614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.47 3.20 8.53 113.37 0.97 4.16 16 2 Si 1.15 -9.97 10.93 68.60 0.75 -9.22 16 3 C -0.46 4.00 8.52 113.37 0.97 4.97 16 4 C -0.21 1.29 5.23 127.77 0.67 1.96 16 5 N -1.08 4.53 5.79 -47.85 -0.28 4.26 16 6 S 2.70 8.53 5.74 -56.49 -0.32 8.20 16 7 O -0.99 -8.51 17.28 -128.00 -2.21 -10.73 16 8 O -0.99 -9.30 17.02 -128.00 -2.18 -11.48 16 9 C -0.68 -0.88 5.94 22.27 0.13 -0.74 16 10 C -0.03 -0.01 9.52 22.27 0.21 0.20 16 11 C -0.15 0.19 8.67 22.27 0.19 0.39 16 12 C -0.06 0.12 5.35 -19.87 -0.11 0.01 16 13 C -0.09 0.34 2.80 71.23 0.20 0.54 16 14 O -0.55 1.08 12.83 -148.98 -1.91 -0.83 16 15 Si 0.97 -3.44 25.14 68.60 1.72 -1.72 16 16 H -0.25 0.77 7.11 99.48 0.71 1.48 16 17 H -0.27 -0.08 7.11 99.48 0.71 0.63 16 18 H -0.25 0.77 7.04 99.48 0.70 1.47 16 19 C -0.12 0.16 9.69 22.27 0.22 0.38 16 20 C -0.03 0.00 9.52 22.27 0.21 0.21 16 21 C -0.39 1.16 4.59 22.27 0.10 1.26 16 22 C -0.10 0.19 9.29 22.27 0.21 0.39 16 23 C -0.15 -0.05 10.05 22.27 0.22 0.17 16 24 C -0.13 -0.17 10.05 22.27 0.22 0.05 16 25 C -0.15 -0.16 10.05 22.27 0.22 0.06 16 26 C -0.10 0.09 9.29 22.27 0.21 0.29 16 27 H 0.08 -0.64 7.96 -2.38 -0.02 -0.66 16 28 H 0.08 -0.49 7.96 -2.39 -0.02 -0.50 16 29 H 0.07 -0.47 7.69 -2.39 -0.02 -0.49 16 30 H 0.08 -0.74 7.68 -2.39 -0.02 -0.75 16 31 H 0.07 -0.59 7.96 -2.38 -0.02 -0.61 16 32 H 0.08 -0.84 7.96 -2.39 -0.02 -0.85 16 33 H 0.09 -0.82 7.96 -2.38 -0.02 -0.83 16 34 H 0.09 -0.48 7.93 -2.39 -0.02 -0.50 16 35 H 0.43 -3.78 7.93 -96.74 -0.77 -4.55 16 36 H 0.15 -0.27 7.61 -2.91 -0.02 -0.30 16 37 H 0.14 -0.63 4.87 -2.91 -0.01 -0.65 16 38 H 0.14 -0.88 7.96 -2.38 -0.02 -0.90 16 39 H 0.39 -3.02 8.70 -74.05 -0.64 -3.67 16 40 H 0.15 -0.63 8.06 -2.91 -0.02 -0.66 16 41 H 0.15 -0.39 7.62 -2.91 -0.02 -0.42 16 42 H 0.14 -0.94 7.42 -2.91 -0.02 -0.96 16 43 H 0.13 -0.35 8.06 -2.91 -0.02 -0.37 16 44 H 0.13 -0.17 8.06 -2.91 -0.02 -0.19 16 45 H 0.13 -0.21 8.06 -2.91 -0.02 -0.23 16 46 H 0.14 -0.65 7.43 -2.91 -0.02 -0.67 16 Total: 0.00 -23.16 397.97 0.76 -22.40 By element: Atomic # 1 Polarization: -15.54 SS G_CDS: 0.34 Total: -15.20 kcal Atomic # 6 Polarization: 9.46 SS G_CDS: 4.85 Total: 14.31 kcal Atomic # 7 Polarization: 4.53 SS G_CDS: -0.28 Total: 4.26 kcal Atomic # 8 Polarization: -16.73 SS G_CDS: -6.30 Total: -23.04 kcal Atomic # 14 Polarization: -13.41 SS G_CDS: 2.47 Total: -10.93 kcal Atomic # 16 Polarization: 8.53 SS G_CDS: -0.32 Total: 8.20 kcal Total: -23.16 0.76 -22.40 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_8987560_13421422.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.830 kcal (2) G-P(sol) polarization free energy of solvation -23.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.404 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds