Wall clock time and date at job start Mon Mar 8 2021 12:55:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86303 * 1 3 3 C 1.86299 * 109.47129 * 2 1 4 4 C 1.86302 * 109.47079 * 119.99832 * 2 1 3 5 5 N 1.46499 * 109.47220 * 300.00050 * 4 2 1 6 6 S 1.65597 * 119.99926 * 180.27822 * 5 4 2 7 7 O 1.42096 * 106.40195 * 178.26439 * 6 5 4 8 8 O 1.42108 * 106.40105 * 311.18495 * 6 5 4 9 9 C 1.76199 * 107.22117 * 64.72196 * 6 5 4 10 10 C 1.33390 * 122.54075 * 269.71156 * 9 6 5 11 11 S 1.75890 * 109.59293 * 179.90130 * 10 9 6 12 12 C 1.75878 * 90.97067 * 0.30204 * 11 10 9 13 13 C 1.50703 * 125.20287 * 179.78823 * 12 11 10 14 14 O 1.42900 * 109.46570 * 120.04397 * 13 12 11 15 15 Si 1.86298 * 109.46912 * 0.04645 * 13 12 11 16 16 H 1.48497 * 109.47343 * 59.99640 * 15 13 12 17 17 H 1.48507 * 109.46942 * 179.97438 * 15 13 12 18 18 H 1.48496 * 109.47026 * 299.99369 * 15 13 12 19 19 C 1.33389 * 109.59513 * 359.82969 * 12 11 10 20 20 C 1.86795 * 109.47110 * 239.99976 * 2 1 3 21 21 C 1.38235 * 119.99976 * 149.72463 * 20 2 1 22 22 C 1.38235 * 119.99851 * 179.76584 * 21 20 2 23 23 C 1.38238 * 120.00222 * 0.50891 * 22 21 20 24 24 C 1.38240 * 119.99741 * 359.74635 * 23 22 21 25 25 C 1.38231 * 119.99807 * 359.97438 * 24 23 22 26 26 H 1.09005 * 109.46812 * 300.00062 * 1 2 3 27 27 H 1.08990 * 109.46980 * 59.99889 * 1 2 3 28 28 H 1.08998 * 109.46977 * 180.02562 * 1 2 3 29 29 H 1.08995 * 109.47315 * 180.02562 * 3 2 1 30 30 H 1.09004 * 109.47307 * 299.99994 * 3 2 1 31 31 H 1.08996 * 109.47454 * 60.00002 * 3 2 1 32 32 H 1.09009 * 109.46695 * 179.97438 * 4 2 1 33 33 H 1.08998 * 109.46860 * 60.00403 * 4 2 1 34 34 H 0.97001 * 119.99790 * 359.97438 * 5 4 2 35 35 H 1.08001 * 125.20245 * 0.02562 * 10 9 6 36 36 H 1.09001 * 109.47307 * 240.04203 * 13 12 11 37 37 H 0.96699 * 114.00528 * 300.00129 * 14 13 12 38 38 H 1.07999 * 122.53888 * 180.02562 * 19 12 11 39 39 H 1.07997 * 119.99969 * 0.02562 * 21 20 2 40 40 H 1.08003 * 120.00269 * 180.23214 * 22 21 20 41 41 H 1.08000 * 120.00255 * 179.72463 * 23 22 21 42 42 H 1.07998 * 120.00179 * 179.97438 * 24 23 22 43 43 H 1.08001 * 119.99909 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4840 1.7564 0.0000 4 6 2.4840 -0.8782 1.5212 5 7 1.9957 -0.1876 2.7173 6 16 2.4014 -0.7493 4.2213 7 8 1.8162 0.1471 5.1558 8 8 2.1369 -2.1455 4.2130 9 6 4.1466 -0.5746 4.3901 10 6 5.0012 -1.5371 4.0400 11 16 6.6487 -1.0038 4.3484 12 6 6.0665 0.5383 4.9619 13 6 6.9392 1.6533 5.4778 14 8 6.7262 2.8274 4.6916 15 14 8.7280 1.1455 5.3635 16 1 9.0726 0.8620 3.9471 17 1 9.5880 2.2445 5.8713 18 1 8.9494 -0.0746 6.1804 19 6 4.7344 0.5695 4.9016 20 6 2.4857 -0.8806 -1.5252 21 6 3.6908 -0.5114 -2.0928 22 6 4.1539 -1.1663 -3.2187 23 6 3.4069 -2.1833 -3.7831 24 6 2.1991 -2.5490 -3.2185 25 6 1.7389 -1.8979 -2.0893 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 3.5740 1.7565 -0.0005 30 1 2.1207 2.2703 -0.8900 31 1 2.1207 2.2703 0.8899 32 1 3.5741 -0.8786 1.5209 33 1 2.1207 -1.9059 1.5211 34 1 1.4383 0.6013 2.6283 35 1 4.7241 -2.4962 3.6281 36 1 6.6863 1.8613 6.5175 37 1 6.9315 2.7152 3.7534 38 1 4.1581 1.4231 5.2267 39 1 4.2725 0.2859 -1.6543 40 1 5.0973 -0.8804 -3.6601 41 1 3.7665 -2.6920 -4.6653 42 1 1.6153 -3.3432 -3.6596 43 1 0.7951 -2.1833 -1.6484 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_8987560_15065232.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 12:55:44 Heat of formation + Delta-G solvation = -88.106718 kcal Electronic energy + Delta-G solvation = -26604.251669 eV Core-core repulsion = 22798.513420 eV Total energy + Delta-G solvation = -3805.738248 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 371.064 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -39.75168 -39.52281 -38.17042 -37.59361 -36.78747 -36.04206 -31.86398 -31.85395 -31.66701 -29.28988 -28.57946 -27.28257 -26.63747 -24.93041 -23.31367 -23.03776 -21.46668 -20.26240 -19.19918 -18.62547 -18.11738 -17.97203 -17.69575 -17.09986 -16.42882 -16.05640 -15.91506 -15.74015 -15.62372 -15.22362 -14.92334 -14.55032 -14.47382 -14.35642 -14.32561 -14.13287 -14.10471 -13.99833 -13.63323 -13.42216 -13.37945 -13.24085 -13.11087 -12.97968 -12.86615 -12.78185 -12.51785 -12.48336 -12.18137 -12.02164 -11.60472 -11.18910 -11.17032 -10.94326 -10.75203 -10.63964 -10.21783 -9.88235 -9.81652 -9.79495 -0.72396 -0.49116 0.24341 0.29337 0.50671 0.51643 0.95559 1.00998 1.25596 1.35827 1.47314 1.56104 1.64188 1.75520 2.15742 2.26239 2.77364 2.92765 3.20909 3.38084 3.62427 3.80506 4.01156 4.11075 4.18542 4.19187 4.25134 4.38620 4.40478 4.51485 4.56449 4.58225 4.59412 4.62054 4.64904 4.67046 4.74121 4.88129 4.99409 5.05990 5.11343 5.34256 5.40282 5.52589 5.54921 5.61483 5.83297 6.11074 6.33520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.452 4.452 2 Si 1.083 2.917 3 C -0.450 4.450 4 C -0.190 4.190 5 N -1.092 6.092 6 S 2.704 3.296 7 O -0.953 6.953 8 O -0.952 6.952 9 C -0.685 4.685 10 C -0.081 4.081 11 S 0.138 5.862 12 C -0.229 4.229 13 C -0.039 4.039 14 O -0.530 6.530 15 Si 0.894 3.106 16 H -0.234 1.234 17 H -0.224 1.224 18 H -0.233 1.233 19 C -0.039 4.039 20 C -0.377 4.377 21 C -0.087 4.087 22 C -0.133 4.133 23 C -0.107 4.107 24 C -0.132 4.132 25 C -0.086 4.086 26 H 0.075 0.925 27 H 0.076 0.924 28 H 0.074 0.926 29 H 0.073 0.927 30 H 0.076 0.924 31 H 0.075 0.925 32 H 0.079 0.921 33 H 0.090 0.910 34 H 0.416 0.584 35 H 0.186 0.814 36 H 0.130 0.870 37 H 0.378 0.622 38 H 0.160 0.840 39 H 0.120 0.880 40 H 0.119 0.881 41 H 0.120 0.880 42 H 0.120 0.880 43 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.493 0.856 -4.486 5.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.561 4.561 2 Si 1.272 2.728 3 C -0.559 4.559 4 C -0.363 4.363 5 N -0.852 5.852 6 S 2.790 3.210 7 O -0.943 6.943 8 O -0.942 6.942 9 C -0.784 4.784 10 C -0.220 4.220 11 S 0.402 5.598 12 C -0.347 4.347 13 C -0.152 4.152 14 O -0.335 6.335 15 Si 0.713 3.287 16 H -0.157 1.157 17 H -0.146 1.146 18 H -0.156 1.156 19 C -0.068 4.068 20 C -0.420 4.420 21 C -0.105 4.105 22 C -0.151 4.151 23 C -0.125 4.125 24 C -0.150 4.150 25 C -0.104 4.104 26 H 0.094 0.906 27 H 0.095 0.905 28 H 0.094 0.906 29 H 0.092 0.908 30 H 0.095 0.905 31 H 0.094 0.906 32 H 0.097 0.903 33 H 0.109 0.891 34 H 0.251 0.749 35 H 0.203 0.797 36 H 0.147 0.853 37 H 0.225 0.775 38 H 0.178 0.822 39 H 0.138 0.862 40 H 0.137 0.863 41 H 0.138 0.862 42 H 0.138 0.862 43 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 4.263 -0.347 -3.522 5.541 hybrid contribution -1.014 0.664 -0.748 1.424 sum 3.249 0.317 -4.270 5.375 Atomic orbital electron populations 1.26136 1.19609 1.05200 1.05106 0.77980 0.67159 0.65964 0.61695 1.26127 1.06586 1.18010 1.05157 1.26157 1.03996 1.04596 1.01509 1.54920 1.65600 1.43215 1.21512 1.01855 0.72866 0.73866 0.72405 1.93609 1.75241 1.65750 1.59741 1.93601 1.83149 1.31419 1.86020 1.30093 1.28063 1.02141 1.18088 1.25867 0.95809 1.01966 0.98406 1.84501 1.07393 1.09713 1.58236 1.25055 0.98395 1.00146 1.11064 1.24388 1.07536 0.84782 0.98540 1.86560 1.90776 1.32493 1.23716 0.86297 0.75893 0.82921 0.83598 1.15717 1.14639 1.15574 1.19618 0.93319 0.96942 0.96904 1.27160 0.99050 1.03539 1.12270 1.21093 0.95670 0.98418 0.95331 1.21278 1.00022 0.96908 0.96906 1.21265 0.94856 0.96929 0.99446 1.21292 0.96628 1.00277 0.96826 1.21124 0.99080 0.94974 0.95231 0.90614 0.90512 0.90644 0.90831 0.90502 0.90585 0.90274 0.89120 0.74863 0.79677 0.85251 0.77508 0.82242 0.86179 0.86276 0.86209 0.86200 0.86034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.45 1.43 8.53 101.05 0.86 2.29 16 2 Si 1.08 -4.35 10.93 -169.99 -1.86 -6.21 16 3 C -0.45 1.66 8.52 101.05 0.86 2.52 16 4 C -0.19 0.57 5.23 59.85 0.31 0.88 16 5 N -1.09 2.15 5.79 33.52 0.19 2.35 16 6 S 2.70 3.64 5.80 -107.50 -0.62 3.02 16 7 O -0.95 -4.04 17.63 -57.17 -1.01 -5.05 16 8 O -0.95 -3.90 17.37 -57.17 -0.99 -4.90 16 9 C -0.68 -0.38 5.86 -41.21 -0.24 -0.63 16 10 C -0.08 0.03 10.70 29.04 0.31 0.34 16 11 S 0.14 -0.07 20.58 -107.50 -2.21 -2.28 16 12 C -0.23 0.02 5.72 -36.00 -0.21 -0.19 16 13 C -0.04 0.04 2.96 36.01 0.11 0.15 16 14 O -0.53 0.41 12.86 -35.23 -0.45 -0.04 16 15 Si 0.89 -1.08 26.25 -169.99 -4.46 -5.54 16 16 H -0.23 0.30 7.11 56.52 0.40 0.70 16 17 H -0.22 0.06 7.11 56.52 0.40 0.46 16 18 H -0.23 0.12 7.11 56.52 0.40 0.52 16 19 C -0.04 -0.02 9.56 -41.21 -0.39 -0.42 16 20 C -0.38 0.57 4.59 -39.58 -0.18 0.39 16 21 C -0.09 0.09 9.29 -39.58 -0.37 -0.28 16 22 C -0.13 0.03 10.05 -39.58 -0.40 -0.37 16 23 C -0.11 -0.01 10.05 -39.58 -0.40 -0.41 16 24 C -0.13 0.00 10.05 -39.58 -0.40 -0.40 16 25 C -0.09 0.06 9.29 -39.58 -0.37 -0.31 16 26 H 0.07 -0.27 7.96 -51.93 -0.41 -0.68 16 27 H 0.08 -0.23 7.96 -51.93 -0.41 -0.64 16 28 H 0.07 -0.23 7.69 -51.93 -0.40 -0.63 16 29 H 0.07 -0.29 7.68 -51.93 -0.40 -0.69 16 30 H 0.08 -0.25 7.96 -51.93 -0.41 -0.67 16 31 H 0.08 -0.31 7.96 -51.93 -0.41 -0.72 16 32 H 0.08 -0.34 7.96 -51.92 -0.41 -0.75 16 33 H 0.09 -0.26 7.93 -51.93 -0.41 -0.67 16 34 H 0.42 -1.68 7.93 -34.47 -0.27 -1.95 16 35 H 0.19 -0.41 8.00 -52.49 -0.42 -0.83 16 36 H 0.13 -0.24 7.96 -51.93 -0.41 -0.65 16 37 H 0.38 -1.56 8.70 45.56 0.40 -1.16 16 38 H 0.16 0.04 7.97 -52.49 -0.42 -0.38 16 39 H 0.12 -0.37 7.42 -52.49 -0.39 -0.76 16 40 H 0.12 -0.20 8.06 -52.48 -0.42 -0.62 16 41 H 0.12 -0.16 8.06 -52.49 -0.42 -0.59 16 42 H 0.12 -0.17 8.06 -52.49 -0.42 -0.59 16 43 H 0.12 -0.31 7.43 -52.49 -0.39 -0.70 16 LS Contribution 391.64 15.07 5.90 5.90 Total: 0.00 -9.93 391.64 -11.26 -21.19 By element: Atomic # 1 Polarization: -6.76 SS G_CDS: -5.25 Total: -12.01 kcal Atomic # 6 Polarization: 4.07 SS G_CDS: -0.50 Total: 3.57 kcal Atomic # 7 Polarization: 2.15 SS G_CDS: 0.19 Total: 2.35 kcal Atomic # 8 Polarization: -7.53 SS G_CDS: -2.45 Total: -9.98 kcal Atomic # 14 Polarization: -5.43 SS G_CDS: -6.32 Total: -11.75 kcal Atomic # 16 Polarization: 3.57 SS G_CDS: -2.84 Total: 0.73 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -9.93 -11.26 -21.19 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_8987560_15065232.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.918 kcal (2) G-P(sol) polarization free energy of solvation -9.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.189 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds