Wall clock time and date at job start Mon Mar 8 2021 12:55:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86303 * 1 3 3 C 1.86299 * 109.47129 * 2 1 4 4 C 1.86302 * 109.47079 * 119.99832 * 2 1 3 5 5 N 1.46499 * 109.47220 * 300.00050 * 4 2 1 6 6 S 1.65597 * 119.99926 * 180.27822 * 5 4 2 7 7 O 1.42096 * 106.40195 * 178.26439 * 6 5 4 8 8 O 1.42108 * 106.40105 * 311.18495 * 6 5 4 9 9 C 1.76199 * 107.22117 * 64.72196 * 6 5 4 10 10 C 1.33390 * 122.54075 * 269.71156 * 9 6 5 11 11 S 1.75890 * 109.59293 * 179.90130 * 10 9 6 12 12 C 1.75878 * 90.97067 * 0.30204 * 11 10 9 13 13 C 1.50703 * 125.20287 * 179.78823 * 12 11 10 14 14 O 1.42900 * 109.46570 * 120.04397 * 13 12 11 15 15 Si 1.86298 * 109.46912 * 0.04645 * 13 12 11 16 16 H 1.48497 * 109.47343 * 59.99640 * 15 13 12 17 17 H 1.48507 * 109.46942 * 179.97438 * 15 13 12 18 18 H 1.48496 * 109.47026 * 299.99369 * 15 13 12 19 19 C 1.33389 * 109.59513 * 359.82969 * 12 11 10 20 20 C 1.86795 * 109.47110 * 239.99976 * 2 1 3 21 21 C 1.38235 * 119.99976 * 149.72463 * 20 2 1 22 22 C 1.38235 * 119.99851 * 179.76584 * 21 20 2 23 23 C 1.38238 * 120.00222 * 0.50891 * 22 21 20 24 24 C 1.38240 * 119.99741 * 359.74635 * 23 22 21 25 25 C 1.38231 * 119.99807 * 359.97438 * 24 23 22 26 26 H 1.09005 * 109.46812 * 300.00062 * 1 2 3 27 27 H 1.08990 * 109.46980 * 59.99889 * 1 2 3 28 28 H 1.08998 * 109.46977 * 180.02562 * 1 2 3 29 29 H 1.08995 * 109.47315 * 180.02562 * 3 2 1 30 30 H 1.09004 * 109.47307 * 299.99994 * 3 2 1 31 31 H 1.08996 * 109.47454 * 60.00002 * 3 2 1 32 32 H 1.09009 * 109.46695 * 179.97438 * 4 2 1 33 33 H 1.08998 * 109.46860 * 60.00403 * 4 2 1 34 34 H 0.97001 * 119.99790 * 359.97438 * 5 4 2 35 35 H 1.08001 * 125.20245 * 0.02562 * 10 9 6 36 36 H 1.09001 * 109.47307 * 240.04203 * 13 12 11 37 37 H 0.96699 * 114.00528 * 300.00129 * 14 13 12 38 38 H 1.07999 * 122.53888 * 180.02562 * 19 12 11 39 39 H 1.07997 * 119.99969 * 0.02562 * 21 20 2 40 40 H 1.08003 * 120.00269 * 180.23214 * 22 21 20 41 41 H 1.08000 * 120.00255 * 179.72463 * 23 22 21 42 42 H 1.07998 * 120.00179 * 179.97438 * 24 23 22 43 43 H 1.08001 * 119.99909 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4840 1.7564 0.0000 4 6 2.4840 -0.8782 1.5212 5 7 1.9957 -0.1876 2.7173 6 16 2.4014 -0.7493 4.2213 7 8 1.8162 0.1471 5.1558 8 8 2.1369 -2.1455 4.2130 9 6 4.1466 -0.5746 4.3901 10 6 5.0012 -1.5371 4.0400 11 16 6.6487 -1.0038 4.3484 12 6 6.0665 0.5383 4.9619 13 6 6.9392 1.6533 5.4778 14 8 6.7262 2.8274 4.6916 15 14 8.7280 1.1455 5.3635 16 1 9.0726 0.8620 3.9471 17 1 9.5880 2.2445 5.8713 18 1 8.9494 -0.0746 6.1804 19 6 4.7344 0.5695 4.9016 20 6 2.4857 -0.8806 -1.5252 21 6 3.6908 -0.5114 -2.0928 22 6 4.1539 -1.1663 -3.2187 23 6 3.4069 -2.1833 -3.7831 24 6 2.1991 -2.5490 -3.2185 25 6 1.7389 -1.8979 -2.0893 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 3.5740 1.7565 -0.0005 30 1 2.1207 2.2703 -0.8900 31 1 2.1207 2.2703 0.8899 32 1 3.5741 -0.8786 1.5209 33 1 2.1207 -1.9059 1.5211 34 1 1.4383 0.6013 2.6283 35 1 4.7241 -2.4962 3.6281 36 1 6.6863 1.8613 6.5175 37 1 6.9315 2.7152 3.7534 38 1 4.1581 1.4231 5.2267 39 1 4.2725 0.2859 -1.6543 40 1 5.0973 -0.8804 -3.6601 41 1 3.7665 -2.6920 -4.6653 42 1 1.6153 -3.3432 -3.6596 43 1 0.7951 -2.1833 -1.6484 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_8987560_15065232.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 12:55:43 Heat of formation + Delta-G solvation = -86.749891 kcal Electronic energy + Delta-G solvation = -26604.192832 eV Core-core repulsion = 22798.513420 eV Total energy + Delta-G solvation = -3805.679412 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 371.064 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -39.62909 -39.48227 -38.36188 -37.51463 -36.98645 -35.91500 -31.81538 -31.73851 -31.54575 -28.98907 -28.27571 -27.22352 -26.45430 -24.91178 -23.20435 -22.93031 -21.45091 -20.25599 -19.15396 -18.69001 -18.00865 -17.90502 -17.69798 -17.06646 -16.33129 -15.96575 -15.83382 -15.66920 -15.59431 -15.12606 -14.82455 -14.47724 -14.28393 -14.21788 -14.18186 -14.05677 -13.96820 -13.85600 -13.49857 -13.31848 -13.21426 -13.15933 -13.11918 -13.06807 -12.91476 -12.63327 -12.50193 -12.40073 -12.12174 -11.88355 -11.58107 -10.95225 -10.90656 -10.78180 -10.65685 -10.47195 -10.17875 -9.84630 -9.73338 -9.68670 -0.75760 -0.48666 0.29764 0.39508 0.55543 0.58919 0.99005 1.06635 1.35134 1.44310 1.70952 1.80033 1.83966 1.96165 2.23286 2.51637 2.71310 3.02394 3.25739 3.46306 3.67887 3.90062 4.14569 4.21825 4.23420 4.32512 4.46984 4.52771 4.59199 4.64699 4.67088 4.75565 4.86498 4.89512 4.90661 4.92213 4.93896 5.00294 5.06706 5.10749 5.23621 5.60004 5.62172 5.67906 5.69370 5.75751 6.07677 6.23159 6.61602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.470 4.470 2 Si 1.152 2.848 3 C -0.461 4.461 4 C -0.210 4.210 5 N -1.081 6.081 6 S 2.717 3.283 7 O -0.988 6.988 8 O -0.984 6.984 9 C -0.689 4.689 10 C -0.083 4.083 11 S 0.151 5.849 12 C -0.231 4.231 13 C -0.038 4.038 14 O -0.543 6.543 15 Si 0.916 3.084 16 H -0.230 1.230 17 H -0.239 1.239 18 H -0.243 1.243 19 C -0.052 4.052 20 C -0.387 4.387 21 C -0.098 4.098 22 C -0.150 4.150 23 C -0.126 4.126 24 C -0.151 4.151 25 C -0.101 4.101 26 H 0.080 0.920 27 H 0.074 0.926 28 H 0.073 0.927 29 H 0.079 0.921 30 H 0.074 0.926 31 H 0.082 0.918 32 H 0.095 0.905 33 H 0.090 0.910 34 H 0.426 0.574 35 H 0.202 0.798 36 H 0.135 0.865 37 H 0.391 0.609 38 H 0.159 0.841 39 H 0.141 0.859 40 H 0.129 0.871 41 H 0.126 0.874 42 H 0.126 0.874 43 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.012 1.356 -4.716 5.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.578 4.578 2 Si 1.335 2.665 3 C -0.570 4.570 4 C -0.380 4.380 5 N -0.844 5.844 6 S 2.804 3.196 7 O -0.978 6.978 8 O -0.974 6.974 9 C -0.790 4.790 10 C -0.222 4.222 11 S 0.415 5.585 12 C -0.349 4.349 13 C -0.151 4.151 14 O -0.350 6.350 15 Si 0.737 3.263 16 H -0.153 1.153 17 H -0.162 1.162 18 H -0.166 1.166 19 C -0.080 4.080 20 C -0.428 4.428 21 C -0.115 4.115 22 C -0.168 4.168 23 C -0.144 4.144 24 C -0.169 4.169 25 C -0.119 4.119 26 H 0.099 0.901 27 H 0.094 0.906 28 H 0.093 0.907 29 H 0.098 0.902 30 H 0.093 0.907 31 H 0.101 0.899 32 H 0.114 0.886 33 H 0.109 0.891 34 H 0.265 0.735 35 H 0.219 0.781 36 H 0.152 0.848 37 H 0.241 0.759 38 H 0.177 0.823 39 H 0.159 0.841 40 H 0.147 0.853 41 H 0.144 0.856 42 H 0.144 0.856 43 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 4.760 0.142 -3.776 6.077 hybrid contribution -1.133 0.500 -0.726 1.435 sum 3.626 0.641 -4.502 5.816 Atomic orbital electron populations 1.26338 1.20870 1.05254 1.05321 0.76954 0.65522 0.64753 0.59223 1.26232 1.07183 1.18140 1.05422 1.26521 1.05384 1.04926 1.01190 1.54626 1.65632 1.43633 1.20556 1.01191 0.72916 0.72809 0.72662 1.93557 1.76327 1.66291 1.61608 1.93558 1.83908 1.33191 1.86703 1.29904 1.27378 1.02616 1.19071 1.26135 0.95859 1.02380 0.97865 1.84465 1.07009 1.09291 1.57778 1.25208 0.98331 1.00577 1.10735 1.24437 1.07343 0.84493 0.98860 1.86529 1.90864 1.32621 1.24967 0.85978 0.75255 0.81708 0.83379 1.15309 1.16194 1.16627 1.19690 0.93707 0.97126 0.97517 1.27743 0.98769 1.03212 1.13111 1.21445 0.96100 0.98835 0.95167 1.21552 1.00603 0.97113 0.97523 1.21480 0.95286 0.97564 1.00082 1.21538 0.96980 1.00922 0.97496 1.21441 0.99916 0.95295 0.95261 0.90106 0.90639 0.90737 0.90163 0.90677 0.89936 0.88646 0.89142 0.73532 0.78106 0.84782 0.75912 0.82336 0.84125 0.85315 0.85599 0.85564 0.84645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.47 3.23 8.53 113.37 0.97 4.20 16 2 Si 1.15 -10.40 10.93 68.60 0.75 -9.65 16 3 C -0.46 4.08 8.52 113.37 0.97 5.05 16 4 C -0.21 1.44 5.23 127.77 0.67 2.11 16 5 N -1.08 4.73 5.79 -47.85 -0.28 4.45 16 6 S 2.72 8.35 5.80 -56.49 -0.33 8.02 16 7 O -0.99 -9.25 17.63 -128.00 -2.26 -11.50 16 8 O -0.98 -8.62 17.37 -128.00 -2.22 -10.85 16 9 C -0.69 -0.69 5.86 21.22 0.12 -0.57 16 10 C -0.08 0.11 10.70 66.72 0.71 0.82 16 11 S 0.15 -0.27 20.58 -56.49 -1.16 -1.44 16 12 C -0.23 0.14 5.72 24.59 0.14 0.28 16 13 C -0.04 0.10 2.96 71.24 0.21 0.31 16 14 O -0.54 1.18 12.86 -148.98 -1.92 -0.74 16 15 Si 0.92 -2.58 26.25 68.60 1.80 -0.78 16 16 H -0.23 0.82 7.11 99.48 0.71 1.52 16 17 H -0.24 0.11 7.11 99.48 0.71 0.82 16 18 H -0.24 0.31 7.11 99.48 0.71 1.01 16 19 C -0.05 -0.06 9.56 21.22 0.20 0.14 16 20 C -0.39 1.34 4.59 22.27 0.10 1.44 16 21 C -0.10 0.24 9.29 22.27 0.21 0.45 16 22 C -0.15 0.02 10.05 22.27 0.22 0.24 16 23 C -0.13 -0.13 10.05 22.27 0.22 0.09 16 24 C -0.15 -0.12 10.05 22.27 0.22 0.11 16 25 C -0.10 0.12 9.29 22.27 0.21 0.33 16 26 H 0.08 -0.63 7.96 -2.38 -0.02 -0.65 16 27 H 0.07 -0.48 7.96 -2.39 -0.02 -0.50 16 28 H 0.07 -0.49 7.69 -2.39 -0.02 -0.50 16 29 H 0.08 -0.79 7.68 -2.39 -0.02 -0.80 16 30 H 0.07 -0.59 7.96 -2.38 -0.02 -0.61 16 31 H 0.08 -0.80 7.96 -2.39 -0.02 -0.82 16 32 H 0.10 -0.95 7.96 -2.38 -0.02 -0.97 16 33 H 0.09 -0.57 7.93 -2.39 -0.02 -0.59 16 34 H 0.43 -3.70 7.93 -96.74 -0.77 -4.47 16 35 H 0.20 -1.05 8.00 -2.91 -0.02 -1.07 16 36 H 0.13 -0.52 7.96 -2.39 -0.02 -0.54 16 37 H 0.39 -3.57 8.70 -74.06 -0.64 -4.22 16 38 H 0.16 0.14 7.97 -2.91 -0.02 0.12 16 39 H 0.14 -1.05 7.42 -2.91 -0.02 -1.07 16 40 H 0.13 -0.41 8.06 -2.91 -0.02 -0.44 16 41 H 0.13 -0.20 8.06 -2.91 -0.02 -0.22 16 42 H 0.13 -0.23 8.06 -2.91 -0.02 -0.25 16 43 H 0.14 -0.69 7.43 -2.91 -0.02 -0.71 16 Total: 0.00 -22.38 391.64 -0.05 -22.43 By element: Atomic # 1 Polarization: -15.35 SS G_CDS: 0.38 Total: -14.97 kcal Atomic # 6 Polarization: 9.83 SS G_CDS: 5.18 Total: 15.01 kcal Atomic # 7 Polarization: 4.73 SS G_CDS: -0.28 Total: 4.45 kcal Atomic # 8 Polarization: -16.69 SS G_CDS: -6.40 Total: -23.09 kcal Atomic # 14 Polarization: -12.98 SS G_CDS: 2.55 Total: -10.43 kcal Atomic # 16 Polarization: 8.08 SS G_CDS: -1.49 Total: 6.59 kcal Total: -22.38 -0.05 -22.43 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_8987560_15065232.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.322 kcal (2) G-P(sol) polarization free energy of solvation -22.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.427 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds