Wall clock time and date at job start Mon Mar 8 2021 16:41:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46501 * 120.00269 * 2 1 4 4 H 1.08996 * 109.47139 * 173.79004 * 3 2 1 5 5 C 1.53002 * 109.47104 * 293.79502 * 3 2 1 6 6 C 1.52996 * 109.46872 * 179.97438 * 5 3 2 7 7 C 1.52988 * 109.47559 * 299.99781 * 6 5 3 8 8 H 1.09005 * 109.47179 * 300.00538 * 7 6 5 9 9 O 1.42896 * 109.47403 * 180.02562 * 7 6 5 10 10 C 1.53001 * 109.47374 * 60.00130 * 7 6 5 11 11 C 1.53001 * 109.46981 * 300.00351 * 10 7 6 12 12 S 1.65603 * 119.99831 * 179.97438 * 2 1 3 13 13 O 1.42104 * 106.39988 * 31.34481 * 12 2 1 14 14 O 1.42103 * 106.40074 * 164.25865 * 12 2 1 15 15 C 1.76200 * 107.22096 * 277.80306 * 12 2 1 16 16 C 1.33392 * 122.53681 * 164.65130 * 15 12 2 17 17 C 1.50696 * 125.20429 * 0.03028 * 16 15 12 18 18 O 1.42906 * 109.47308 * 39.56485 * 17 16 15 19 19 Si 1.86296 * 109.47091 * 159.56604 * 17 16 15 20 20 S 1.75886 * 109.58897 * 179.90539 * 16 15 12 21 21 C 1.75882 * 90.97162 * 0.30267 * 20 16 15 22 22 C 1.33388 * 109.59296 * 359.83100 * 21 20 16 23 23 H 1.09000 * 109.47004 * 90.00018 * 1 2 3 24 24 H 1.08999 * 109.47239 * 210.00280 * 1 2 3 25 25 H 1.09005 * 109.47106 * 330.00146 * 1 2 3 26 26 H 1.08995 * 109.47010 * 59.99669 * 5 3 2 27 27 H 1.09001 * 109.46386 * 299.99601 * 5 3 2 28 28 H 1.09007 * 109.46766 * 179.97438 * 6 5 3 29 29 H 1.09005 * 109.47314 * 60.00236 * 6 5 3 30 30 H 0.96700 * 114.00252 * 179.97438 * 9 7 6 31 31 H 1.09006 * 109.47154 * 60.00003 * 10 7 6 32 32 H 1.08999 * 109.47604 * 180.02562 * 10 7 6 33 33 H 1.08997 * 109.46950 * 179.97438 * 11 10 7 34 34 H 1.08996 * 109.46927 * 299.99897 * 11 10 7 35 35 H 1.09001 * 109.47158 * 279.56389 * 17 16 15 36 36 H 0.96700 * 113.99671 * 184.96199 * 18 17 16 37 37 H 1.48504 * 109.99948 * 178.67932 * 19 17 16 38 38 H 1.48495 * 110.00142 * 299.99491 * 19 17 16 39 39 H 1.08001 * 125.20201 * 179.86336 * 21 20 16 40 40 H 1.08002 * 122.53917 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 1 3.2639 1.0725 0.1112 5 6 1.9485 2.0014 -1.3199 6 6 2.7131 3.3266 -1.3196 7 6 2.2297 4.1941 -0.1558 8 1 1.1632 4.3899 -0.2671 9 8 2.9434 5.4321 -0.1559 10 6 2.4786 3.4615 1.1642 11 6 1.7141 2.1362 1.1639 12 16 2.2929 -1.4342 0.0006 13 8 1.4852 -2.3641 -0.7081 14 8 3.6299 -1.1258 -0.3693 15 6 2.3559 -1.9995 1.6683 16 6 2.6817 -3.2525 1.9893 17 6 3.0343 -4.3378 1.0050 18 8 3.8331 -3.7878 -0.0446 19 14 3.9905 -5.6789 1.8755 20 16 2.6404 -3.4432 3.7373 21 6 2.1600 -1.7634 3.9392 22 6 2.0651 -1.1785 2.7442 23 1 -0.3633 0.0000 -1.0277 24 1 -0.3634 -0.8899 0.5139 25 1 -0.3633 0.8900 0.5138 26 1 0.8821 2.1975 -1.4310 27 1 2.2926 1.3831 -2.1490 28 1 2.5360 3.8484 -2.2601 29 1 3.7796 3.1308 -1.2083 30 1 2.6875 6.0336 0.5566 31 1 3.5452 3.2656 1.2755 32 1 2.1338 4.0793 1.9933 33 1 1.8918 1.6141 2.1041 34 1 0.6477 2.3320 1.0526 35 1 2.1206 -4.7576 0.5844 36 1 4.0342 -4.4129 -0.7545 37 1 4.3167 -6.7703 0.9228 38 1 5.2387 -5.1194 2.4535 39 1 1.9713 -1.2793 4.8861 40 1 1.7825 -0.1430 2.6250 There are 56 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 56 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_9156394_14772022.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 16:41:10 Heat of formation + Delta-G solvation = -113.902734 kcal Electronic energy + Delta-G solvation = -26429.442441 eV Core-core repulsion = 22657.713307 eV Total energy + Delta-G solvation = -3771.729134 eV No. of doubly occupied orbitals = 56 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 334.079 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.40100 -39.58309 -38.29050 -37.95856 -37.61588 -36.87070 -34.91148 -32.02592 -31.85675 -29.72305 -27.59517 -27.05211 -24.46225 -23.78731 -22.90771 -21.70371 -20.75248 -19.81173 -19.09841 -18.71143 -18.21571 -18.17423 -17.81314 -17.41491 -16.46757 -16.19324 -15.61025 -15.52759 -15.46090 -15.26427 -15.04442 -14.49635 -14.42867 -14.29322 -14.05039 -13.75579 -13.62882 -13.43852 -13.26398 -13.23198 -13.14587 -13.03750 -13.01687 -12.62619 -12.53270 -12.28946 -12.14834 -12.14180 -11.76576 -11.54271 -11.25961 -11.04880 -10.74334 -10.08608 -10.08263 -9.70910 -5.22880 -0.77761 -0.51450 0.31407 0.64468 0.98752 1.16962 1.46918 1.78281 1.85310 2.67238 2.97076 3.24178 3.35694 3.46533 3.53992 3.64927 3.89171 4.04861 4.08078 4.11430 4.13815 4.23214 4.28811 4.32030 4.37901 4.44543 4.57000 4.62599 4.71538 4.74036 4.87402 4.88801 4.97577 5.03420 5.07953 5.14496 5.16702 5.17811 5.29005 5.43916 5.54417 6.25644 6.92138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.994 5.994 3 C 0.139 3.861 4 H 0.084 0.916 5 C -0.121 4.121 6 C -0.115 4.115 7 C 0.103 3.897 8 H 0.073 0.927 9 O -0.591 6.591 10 C -0.147 4.147 11 C -0.124 4.124 12 S 2.720 3.280 13 O -0.980 6.980 14 O -0.980 6.980 15 C -0.678 4.678 16 C -0.089 4.089 17 C -0.100 4.100 18 O -0.562 6.562 19 Si 0.762 3.238 20 S 0.195 5.805 21 C -0.206 4.206 22 C -0.099 4.099 23 H 0.063 0.937 24 H 0.075 0.925 25 H 0.108 0.892 26 H 0.092 0.908 27 H 0.059 0.941 28 H 0.071 0.929 29 H 0.056 0.944 30 H 0.395 0.605 31 H 0.060 0.940 32 H 0.091 0.909 33 H 0.083 0.917 34 H 0.097 0.903 35 H 0.122 0.878 36 H 0.410 0.590 37 H -0.246 1.246 38 H -0.279 1.279 39 H 0.207 0.793 40 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.155 0.481 6.828 9.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.834 5.834 3 C 0.033 3.967 4 H 0.102 0.898 5 C -0.161 4.161 6 C -0.154 4.154 7 C 0.045 3.955 8 H 0.091 0.909 9 O -0.400 6.400 10 C -0.186 4.186 11 C -0.163 4.163 12 S 2.810 3.190 13 O -0.970 6.970 14 O -0.970 6.970 15 C -0.779 4.779 16 C -0.210 4.210 17 C -0.209 4.209 18 O -0.375 6.375 19 Si 0.660 3.340 20 S 0.459 5.541 21 C -0.342 4.342 22 C -0.127 4.127 23 H 0.081 0.919 24 H 0.093 0.907 25 H 0.127 0.873 26 H 0.110 0.890 27 H 0.078 0.922 28 H 0.090 0.910 29 H 0.075 0.925 30 H 0.244 0.756 31 H 0.079 0.921 32 H 0.110 0.890 33 H 0.101 0.899 34 H 0.116 0.884 35 H 0.139 0.861 36 H 0.264 0.736 37 H -0.170 1.170 38 H -0.205 1.205 39 H 0.224 0.776 40 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -4.570 -1.357 7.026 8.490 hybrid contribution -0.020 1.515 -1.300 1.996 sum -4.590 0.158 5.726 7.340 Atomic orbital electron populations 1.21819 0.76495 1.04985 1.03446 1.57429 1.16374 1.20052 1.89496 1.21156 0.96087 0.82587 0.96859 0.89754 1.21813 1.02332 0.95171 0.96744 1.21461 1.00298 0.94793 0.98841 1.21882 0.95587 0.83566 0.94510 0.90929 1.86495 1.67005 1.29397 1.57054 1.22227 1.01187 0.96826 0.98314 1.21934 1.02119 0.94731 0.97500 1.01067 0.72373 0.72016 0.73544 1.93495 1.70368 1.62503 1.70602 1.93519 1.37427 1.84042 1.82062 1.29794 1.19078 1.02935 1.26110 1.24084 1.00129 0.96573 1.00170 1.25132 1.02493 1.01181 0.92052 1.86460 1.72547 1.43421 1.35051 0.94547 0.80922 0.74648 0.83874 1.84009 1.63430 1.11127 0.95563 1.26324 1.07739 0.96733 1.03366 1.19958 1.01596 1.01422 0.89731 0.91866 0.90674 0.87344 0.88987 0.92242 0.91047 0.92474 0.75554 0.92140 0.89004 0.89862 0.88439 0.86070 0.73614 1.17000 1.20483 0.77574 0.81153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 -0.31 9.61 127.77 1.23 0.92 16 2 N -0.99 -1.52 2.49 -516.51 -1.29 -2.80 16 3 C 0.14 0.05 2.50 44.99 0.11 0.17 16 4 H 0.08 0.41 6.83 -2.39 -0.02 0.39 16 5 C -0.12 -0.03 5.29 30.59 0.16 0.14 16 6 C -0.12 -0.17 5.57 30.59 0.17 0.01 16 7 C 0.10 -0.21 3.47 30.59 0.11 -0.10 16 8 H 0.07 -0.37 8.14 -2.38 -0.02 -0.39 16 9 O -0.59 -0.62 13.32 -148.98 -1.98 -2.60 16 10 C -0.15 0.70 5.55 30.60 0.17 0.87 16 11 C -0.12 0.74 5.03 30.60 0.15 0.90 16 12 S 2.72 26.27 4.06 -56.49 -0.23 26.04 16 13 O -0.98 -13.27 16.36 -122.95 -2.01 -15.28 16 14 O -0.98 -16.55 15.41 -120.78 -1.86 -18.41 16 15 C -0.68 -4.27 5.72 21.22 0.12 -4.15 16 16 C -0.09 -0.49 5.78 24.59 0.14 -0.35 16 17 C -0.10 -0.41 2.31 71.23 0.16 -0.24 16 18 O -0.56 -4.77 9.57 -125.38 -1.20 -5.97 16 19 Si 0.76 -0.28 31.25 68.60 2.14 1.87 16 20 S 0.19 -0.20 20.85 -56.49 -1.18 -1.37 16 21 C -0.21 0.59 11.23 66.72 0.75 1.34 16 22 C -0.10 -0.01 9.74 21.21 0.21 0.19 16 23 H 0.06 -0.23 8.14 -2.39 -0.02 -0.25 16 24 H 0.07 -0.33 7.98 -2.39 -0.02 -0.35 16 25 H 0.11 -1.11 6.12 -2.38 -0.01 -1.13 16 26 H 0.09 -0.34 7.83 -2.39 -0.02 -0.36 16 27 H 0.06 0.20 8.14 -2.39 -0.02 0.18 16 28 H 0.07 0.15 8.14 -2.38 -0.02 0.13 16 29 H 0.06 0.27 8.14 -2.38 -0.02 0.25 16 30 H 0.39 -2.94 9.08 -74.06 -0.67 -3.62 16 31 H 0.06 -0.08 8.14 -2.38 -0.02 -0.10 16 32 H 0.09 -0.78 8.14 -2.39 -0.02 -0.80 16 33 H 0.08 -0.67 6.03 -2.39 -0.01 -0.68 16 34 H 0.10 -0.97 6.49 -2.39 -0.02 -0.99 16 35 H 0.12 0.08 7.96 -2.39 -0.02 0.06 16 36 H 0.41 -0.12 8.86 -74.06 -0.66 -0.77 16 37 H -0.25 -0.32 7.11 99.48 0.71 0.39 16 38 H -0.28 -1.79 7.11 99.48 0.71 -1.08 16 39 H 0.21 -2.02 8.06 -2.91 -0.02 -2.04 16 40 H 0.17 -0.89 5.63 -2.91 -0.02 -0.90 16 Total: 0.00 -26.57 337.17 -4.33 -30.90 By element: Atomic # 1 Polarization: -11.83 SS G_CDS: -0.21 Total: -12.04 kcal Atomic # 6 Polarization: -3.80 SS G_CDS: 3.49 Total: -0.32 kcal Atomic # 7 Polarization: -1.52 SS G_CDS: -1.29 Total: -2.80 kcal Atomic # 8 Polarization: -35.20 SS G_CDS: -7.06 Total: -42.26 kcal Atomic # 14 Polarization: -0.28 SS G_CDS: 2.14 Total: 1.87 kcal Atomic # 16 Polarization: 26.07 SS G_CDS: -1.41 Total: 24.66 kcal Total: -26.57 -4.33 -30.90 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_9156394_14772022.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.006 kcal (2) G-P(sol) polarization free energy of solvation -26.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.897 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds