Wall clock time and date at job start Mon Mar 8 2021 16:41:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.46492 * 120.00360 * 2 1 4 4 H 1.08997 * 109.47462 * 175.26397 * 3 2 1 5 5 C 1.53003 * 109.47316 * 295.26942 * 3 2 1 6 6 C 1.53001 * 109.47436 * 179.97438 * 5 3 2 7 7 C 1.53002 * 109.47231 * 299.99945 * 6 5 3 8 8 H 1.08997 * 109.46699 * 299.99904 * 7 6 5 9 9 O 1.42898 * 109.47171 * 179.97438 * 7 6 5 10 10 C 1.53003 * 109.46866 * 59.99706 * 7 6 5 11 11 C 1.53002 * 109.47256 * 299.99825 * 10 7 6 12 12 S 1.65598 * 119.99383 * 180.02562 * 2 1 3 13 13 O 1.42097 * 106.40582 * 28.29557 * 12 2 1 14 14 O 1.42102 * 106.39751 * 161.21325 * 12 2 1 15 15 C 1.76198 * 107.21858 * 274.75141 * 12 2 1 16 16 C 1.38216 * 120.00199 * 194.31783 * 15 12 2 17 17 C 1.50701 * 119.99489 * 359.97438 * 16 15 12 18 18 O 1.42899 * 109.46848 * 75.84054 * 17 16 15 19 19 Si 1.86307 * 109.46663 * 195.83116 * 17 16 15 20 20 C 1.38256 * 119.99956 * 179.97438 * 16 15 12 21 21 C 1.38212 * 120.00134 * 0.02562 * 20 16 15 22 22 C 1.38259 * 120.00142 * 359.96212 * 21 20 16 23 23 C 1.38217 * 119.99561 * 359.78385 * 22 21 20 24 24 H 1.08996 * 109.47204 * 89.99327 * 1 2 3 25 25 H 1.09000 * 109.47158 * 210.00096 * 1 2 3 26 26 H 1.09004 * 109.46769 * 329.99727 * 1 2 3 27 27 H 1.09003 * 109.46750 * 299.99999 * 5 3 2 28 28 H 1.08996 * 109.47015 * 59.99821 * 5 3 2 29 29 H 1.08999 * 109.47382 * 179.97438 * 6 5 3 30 30 H 1.09006 * 109.46868 * 60.00045 * 6 5 3 31 31 H 0.96701 * 113.99620 * 60.00214 * 9 7 6 32 32 H 1.09003 * 109.46750 * 179.97438 * 10 7 6 33 33 H 1.08996 * 109.47015 * 60.00102 * 10 7 6 34 34 H 1.08996 * 109.47334 * 300.00081 * 11 10 7 35 35 H 1.09003 * 109.47042 * 179.97438 * 11 10 7 36 36 H 1.08994 * 109.47822 * 315.83123 * 17 16 15 37 37 H 0.96702 * 114.00856 * 65.02504 * 18 17 16 38 38 H 1.48505 * 109.99733 * 180.02562 * 19 17 16 39 39 H 1.48501 * 110.00132 * 301.32210 * 19 17 16 40 40 H 1.08000 * 119.99444 * 179.97438 * 20 16 15 41 41 H 1.08004 * 120.00007 * 179.97438 * 21 20 16 42 42 H 1.07997 * 120.00278 * 180.02562 * 22 21 20 43 43 H 1.08004 * 119.99810 * 180.25584 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1976 1.2686 0.0000 4 1 3.2662 1.0712 0.0848 5 6 1.9194 2.0182 -1.3045 6 6 2.6840 3.3435 -1.3042 7 6 2.2267 4.1959 -0.1188 8 1 1.1581 4.3930 -0.2038 9 8 2.9412 5.4334 -0.1182 10 6 2.5049 3.4463 1.1857 11 6 1.7403 2.1210 1.1855 12 16 2.2929 -1.4342 -0.0006 13 8 1.4540 -2.3815 -0.6472 14 8 3.6112 -1.1363 -0.4395 15 6 2.4329 -1.9564 1.6764 16 6 3.3217 -2.9588 2.0162 17 6 4.1707 -3.6055 0.9522 18 8 5.2329 -2.7218 0.5880 19 14 4.8840 -5.1964 1.6089 20 6 3.4319 -3.3681 3.3321 21 6 2.6529 -2.7753 4.3078 22 6 1.7640 -1.7724 3.9680 23 6 1.6576 -1.3596 2.6532 24 1 -0.3633 0.0001 -1.0276 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3633 0.8900 0.5139 27 1 2.2448 1.4108 -2.1490 28 1 0.8508 2.2157 -1.3892 29 1 2.4861 3.8773 -2.2337 30 1 3.7527 3.1464 -1.2193 31 1 2.8116 5.9627 -0.9171 32 1 2.1796 4.0538 2.0303 33 1 3.5735 3.2492 1.2707 34 1 0.6716 2.3181 1.1005 35 1 1.9388 1.5868 2.1146 36 1 3.5572 -3.8167 0.0763 37 1 5.8643 -2.5510 1.3003 38 1 5.7239 -5.8438 0.5692 39 1 5.6968 -4.9260 2.8220 40 1 4.1262 -4.1517 3.5975 41 1 2.7387 -3.0954 5.3358 42 1 1.1556 -1.3089 4.7304 43 1 0.9662 -0.5733 2.3884 There are 58 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 58 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_9156394_2726874.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 16:41:54 Heat of formation + Delta-G solvation = -113.815540 kcal Electronic energy + Delta-G solvation = -28037.892177 eV Core-core repulsion = 24177.014577 eV Total energy + Delta-G solvation = -3860.877600 eV No. of doubly occupied orbitals = 58 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 328.122 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.75201 -40.46843 -38.12519 -37.89216 -37.61786 -36.64944 -35.00718 -32.89886 -32.51830 -31.94221 -29.80888 -27.36268 -26.90207 -24.49620 -23.92779 -23.20870 -22.71712 -20.85770 -20.13699 -19.10323 -18.64156 -18.25192 -17.86138 -17.50841 -17.08193 -16.55472 -16.24762 -16.08965 -15.86025 -15.61438 -15.45041 -15.32582 -15.03107 -14.57781 -14.32950 -14.18515 -13.96400 -13.76798 -13.61555 -13.45205 -13.31366 -13.14364 -12.92896 -12.88049 -12.84698 -12.60861 -12.33373 -12.26046 -12.14216 -11.96410 -11.66945 -11.45826 -11.33925 -10.84174 -10.72390 -10.50398 -10.18017 -10.13074 -5.04156 -0.60616 -0.32515 0.02968 1.11253 1.46839 1.80603 1.86901 2.29295 2.71668 3.11771 3.23674 3.33472 3.40056 3.52345 3.58410 3.64480 3.77019 3.78242 3.96393 4.02710 4.04654 4.11540 4.14129 4.19148 4.27368 4.30194 4.31569 4.41585 4.48040 4.51499 4.59215 4.66067 4.71374 4.79800 4.86209 4.93486 4.98570 5.01684 5.04623 5.06086 5.16150 5.18895 5.32684 5.46044 5.62347 6.41253 6.66418 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.999 5.999 3 C 0.144 3.856 4 H 0.107 0.893 5 C -0.124 4.124 6 C -0.152 4.152 7 C 0.103 3.897 8 H 0.056 0.944 9 O -0.568 6.568 10 C -0.112 4.112 11 C -0.128 4.128 12 S 2.680 3.320 13 O -0.953 6.953 14 O -0.921 6.921 15 C -0.649 4.649 16 C -0.014 4.014 17 C -0.120 4.120 18 O -0.491 6.491 19 Si 0.704 3.296 20 C -0.139 4.139 21 C -0.062 4.062 22 C -0.131 4.131 23 C -0.035 4.035 24 H 0.065 0.935 25 H 0.072 0.928 26 H 0.079 0.921 27 H 0.073 0.927 28 H 0.072 0.928 29 H 0.071 0.929 30 H 0.076 0.924 31 H 0.380 0.620 32 H 0.075 0.925 33 H 0.074 0.926 34 H 0.075 0.925 35 H 0.074 0.926 36 H 0.116 0.884 37 H 0.371 0.629 38 H -0.247 1.247 39 H -0.252 1.252 40 H 0.138 0.862 41 H 0.136 0.864 42 H 0.135 0.865 43 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.880 1.071 4.256 5.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.837 5.837 3 C 0.039 3.961 4 H 0.125 0.875 5 C -0.163 4.163 6 C -0.190 4.190 7 C 0.045 3.955 8 H 0.074 0.926 9 O -0.374 6.374 10 C -0.150 4.150 11 C -0.167 4.167 12 S 2.769 3.231 13 O -0.943 6.943 14 O -0.911 6.911 15 C -0.734 4.734 16 C -0.016 4.016 17 C -0.229 4.229 18 O -0.296 6.296 19 Si 0.603 3.397 20 C -0.157 4.157 21 C -0.080 4.080 22 C -0.149 4.149 23 C -0.054 4.054 24 H 0.084 0.916 25 H 0.091 0.909 26 H 0.098 0.902 27 H 0.092 0.908 28 H 0.090 0.910 29 H 0.090 0.910 30 H 0.095 0.905 31 H 0.227 0.773 32 H 0.094 0.906 33 H 0.093 0.907 34 H 0.094 0.906 35 H 0.093 0.907 36 H 0.133 0.867 37 H 0.218 0.782 38 H -0.172 1.172 39 H -0.177 1.177 40 H 0.156 0.844 41 H 0.154 0.846 42 H 0.153 0.847 43 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -2.975 -0.065 3.742 4.781 hybrid contribution 0.179 1.223 0.451 1.316 sum -2.796 1.158 4.193 5.171 Atomic orbital electron populations 1.21619 0.78143 1.03318 1.03208 1.57611 1.15446 1.21126 1.89500 1.21077 0.97024 0.82465 0.95559 0.87514 1.21810 1.01214 0.95874 0.97411 1.22272 1.01722 0.96134 0.98914 1.21838 0.94815 0.83852 0.95041 0.92586 1.86522 1.73028 1.32450 1.45380 1.21438 1.01707 0.94935 0.96936 1.21911 1.01101 0.95405 0.98302 1.02714 0.73721 0.72573 0.74047 1.93627 1.68587 1.60036 1.72040 1.93695 1.35403 1.83152 1.78802 1.30921 1.07601 1.09172 1.25699 1.19850 0.93378 0.93033 0.95364 1.25452 0.92656 1.04006 1.00806 1.86954 1.37584 1.64977 1.40047 0.94610 0.86230 0.79207 0.79682 1.21320 1.00943 1.01065 0.92384 1.21454 0.93020 0.93779 0.99718 1.21363 0.99258 0.97837 0.96471 1.20956 0.95123 0.96441 0.92853 0.91592 0.90888 0.90230 0.90803 0.90972 0.91045 0.90515 0.77305 0.90605 0.90724 0.90649 0.90716 0.86660 0.78181 1.17175 1.17729 0.84414 0.84622 0.84717 0.84639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 -0.19 8.65 59.85 0.52 0.33 16 2 N -1.00 0.17 2.27 -114.61 -0.26 -0.09 16 3 C 0.14 -0.09 2.50 -67.93 -0.17 -0.26 16 4 H 0.11 0.07 6.87 -51.93 -0.36 -0.29 16 5 C -0.12 0.12 5.27 -26.73 -0.14 -0.02 16 6 C -0.15 0.18 5.54 -26.73 -0.15 0.03 16 7 C 0.10 -0.10 3.47 -26.73 -0.09 -0.19 16 8 H 0.06 -0.10 8.14 -51.93 -0.42 -0.52 16 9 O -0.57 -0.27 13.32 -35.23 -0.47 -0.74 16 10 C -0.11 0.11 5.57 -26.73 -0.15 -0.04 16 11 C -0.13 0.29 5.09 -26.73 -0.14 0.15 16 12 S 2.68 8.35 4.40 -107.50 -0.47 7.87 16 13 O -0.95 -5.46 17.09 -57.17 -0.98 -6.43 16 14 O -0.92 -5.22 13.70 -66.26 -0.91 -6.13 16 15 C -0.65 -1.15 5.83 -39.58 -0.23 -1.38 16 16 C -0.01 -0.02 5.27 -104.62 -0.55 -0.58 16 17 C -0.12 -0.26 1.91 36.01 0.07 -0.19 16 18 O -0.49 -1.72 10.68 -57.31 -0.61 -2.34 16 19 Si 0.70 -0.21 30.20 -169.99 -5.13 -5.35 16 20 C -0.14 0.04 8.66 -39.58 -0.34 -0.30 16 21 C -0.06 0.09 10.05 -39.58 -0.40 -0.31 16 22 C -0.13 0.19 10.05 -39.58 -0.40 -0.21 16 23 C -0.03 0.02 9.56 -39.58 -0.38 -0.36 16 24 H 0.07 -0.14 8.14 -51.93 -0.42 -0.56 16 25 H 0.07 -0.20 7.78 -51.93 -0.40 -0.60 16 26 H 0.08 -0.36 6.19 -51.93 -0.32 -0.68 16 27 H 0.07 0.00 8.14 -51.93 -0.42 -0.42 16 28 H 0.07 -0.15 7.79 -51.93 -0.40 -0.56 16 29 H 0.07 -0.15 8.14 -51.93 -0.42 -0.57 16 30 H 0.08 0.00 8.14 -51.93 -0.42 -0.43 16 31 H 0.38 -1.25 9.08 45.56 0.41 -0.83 16 32 H 0.08 -0.07 8.14 -51.93 -0.42 -0.49 16 33 H 0.07 0.00 8.14 -51.93 -0.42 -0.43 16 34 H 0.07 -0.26 6.52 -51.93 -0.34 -0.60 16 35 H 0.07 -0.21 8.08 -51.93 -0.42 -0.63 16 36 H 0.12 0.32 7.10 -51.93 -0.37 -0.04 16 37 H 0.37 -0.07 8.61 45.56 0.39 0.33 16 38 H -0.25 -0.64 7.11 56.52 0.40 -0.24 16 39 H -0.25 -0.04 6.66 56.52 0.38 0.34 16 40 H 0.14 -0.28 4.87 -52.49 -0.26 -0.53 16 41 H 0.14 -0.52 8.06 -52.48 -0.42 -0.95 16 42 H 0.13 -0.51 8.06 -52.49 -0.42 -0.94 16 43 H 0.14 -0.40 6.35 -52.48 -0.33 -0.74 16 LS Contribution 345.21 15.07 5.20 5.20 Total: 0.00 -10.10 345.21 -11.61 -21.71 By element: Atomic # 1 Polarization: -4.96 SS G_CDS: -5.42 Total: -10.38 kcal Atomic # 6 Polarization: -0.78 SS G_CDS: -2.55 Total: -3.32 kcal Atomic # 7 Polarization: 0.17 SS G_CDS: -0.26 Total: -0.09 kcal Atomic # 8 Polarization: -12.67 SS G_CDS: -2.97 Total: -15.63 kcal Atomic # 14 Polarization: -0.21 SS G_CDS: -5.13 Total: -5.35 kcal Atomic # 16 Polarization: 8.35 SS G_CDS: -0.47 Total: 7.87 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -10.10 -11.61 -21.71 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_9156394_2726874.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.110 kcal (2) G-P(sol) polarization free energy of solvation -10.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.706 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds