Wall clock time and date at job start Mon Mar 8 2021 14:50:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.47007 * 2 1 4 4 C 1.53000 * 109.47273 * 240.00069 * 2 1 3 5 5 O 1.45205 * 109.47008 * 120.00089 * 2 1 3 6 6 C 1.34635 * 116.99905 * 60.00145 * 5 2 1 7 7 O 1.21507 * 119.99978 * 359.97438 * 6 5 2 8 8 N 1.34773 * 119.99676 * 179.97438 * 6 5 2 9 9 C 1.46503 * 119.99979 * 179.97438 * 8 6 5 10 10 H 1.09003 * 112.90754 * 311.60720 * 9 8 6 11 11 C 1.53779 * 113.61146 * 82.85482 * 9 8 6 12 12 C 1.53779 * 87.08098 * 89.11892 * 11 9 8 13 13 H 1.09002 * 113.61476 * 140.06368 * 12 11 9 14 14 N 1.46503 * 113.61235 * 270.88031 * 12 11 9 15 15 S 1.65601 * 120.00062 * 244.49037 * 14 12 11 16 16 O 1.42094 * 106.40130 * 311.46394 * 15 14 12 17 17 O 1.42104 * 106.39748 * 178.53999 * 15 14 12 18 18 C 1.76204 * 107.21571 * 65.00527 * 15 14 12 19 19 C 1.38234 * 120.00076 * 89.99588 * 18 15 14 20 20 C 1.38227 * 120.00148 * 180.02562 * 19 18 15 21 21 C 1.38238 * 119.99738 * 0.02562 * 20 19 18 22 22 C 1.50707 * 119.99982 * 179.97438 * 21 20 19 23 23 O 1.42897 * 109.47018 * 64.99861 * 22 21 20 24 24 Si 1.86292 * 109.47179 * 184.99723 * 22 21 20 25 25 C 1.38233 * 120.00135 * 0.25144 * 21 20 19 26 26 C 1.38229 * 120.00000 * 270.01857 * 18 15 14 27 27 C 1.53776 * 87.08233 * 25.43161 * 12 11 9 28 28 H 1.09005 * 109.47480 * 299.99991 * 1 2 3 29 29 H 1.09004 * 109.47431 * 60.00076 * 1 2 3 30 30 H 1.08995 * 109.47204 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.47182 * 179.97438 * 3 2 1 32 32 H 1.08996 * 109.47247 * 300.00128 * 3 2 1 33 33 H 1.09005 * 109.46993 * 59.99710 * 3 2 1 34 34 H 1.08995 * 109.46998 * 300.00116 * 4 2 1 35 35 H 1.09004 * 109.47010 * 59.99597 * 4 2 1 36 36 H 1.08995 * 109.46968 * 179.97438 * 4 2 1 37 37 H 0.97002 * 120.00676 * 0.02562 * 8 6 5 38 38 H 1.08998 * 113.61717 * 334.56592 * 11 9 8 39 39 H 1.08999 * 113.61717 * 203.66779 * 11 9 8 40 40 H 0.96997 * 119.99580 * 64.49831 * 14 12 11 41 41 H 1.08006 * 119.99988 * 0.02562 * 19 18 15 42 42 H 1.08005 * 120.00389 * 179.97438 * 20 19 18 43 43 H 1.09000 * 109.46766 * 304.99799 * 22 21 20 44 44 H 0.96698 * 114.00384 * 60.00193 * 23 22 21 45 45 H 1.48500 * 110.00272 * 179.97438 * 24 22 21 46 46 H 1.48502 * 110.00485 * 301.32115 * 24 22 21 47 47 H 1.08002 * 120.00151 * 179.72608 * 25 21 20 48 48 H 1.08004 * 119.99821 * 0.02562 * 26 18 15 49 49 H 1.09004 * 113.61482 * 89.11418 * 27 12 11 50 50 H 1.08999 * 113.61892 * 220.02064 * 27 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 8 2.0140 -0.6845 1.1856 6 6 1.6522 -1.9723 1.3383 7 8 0.9509 -2.5094 0.5040 8 7 2.0680 -2.6657 2.4166 9 6 1.6740 -4.0669 2.5831 10 1 0.6061 -4.2278 2.4349 11 6 2.5596 -5.0527 1.8029 12 6 3.4627 -5.1034 3.0466 13 1 3.8401 -6.1009 3.2717 14 7 4.5140 -4.0832 3.0504 15 16 6.1060 -4.5345 2.9858 16 8 6.2760 -5.5476 3.9674 17 8 6.8635 -3.3323 2.9702 18 6 6.3662 -5.3067 1.4235 19 6 6.7496 -4.5486 0.3330 20 6 6.9532 -5.1542 -0.8927 21 6 6.7728 -6.5181 -1.0281 22 6 6.9942 -7.1784 -2.3646 23 8 8.3713 -7.0659 -2.7292 24 14 6.5265 -8.9782 -2.2531 25 6 6.3839 -7.2754 0.0610 26 6 6.1865 -6.6706 1.2881 27 6 2.2220 -4.7126 3.8667 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 3.1299 1.4426 0.0005 32 1 1.6766 1.9564 -0.8899 33 1 1.6766 1.9564 0.8900 34 1 1.6767 -1.7488 -1.2492 35 1 1.6766 -0.2074 -2.1392 36 1 3.1300 -0.7208 -1.2494 37 1 2.6276 -2.2369 3.0829 38 1 3.0416 -4.6107 0.9310 39 1 2.0681 -6.0000 1.5813 40 1 4.2776 -3.1433 3.0908 41 1 6.8901 -3.4829 0.4387 42 1 7.2523 -4.5618 -1.7448 43 1 6.3775 -6.6888 -3.1183 44 1 8.9794 -7.4804 -2.1020 45 1 6.7397 -9.6407 -3.5649 46 1 7.3380 -9.6501 -1.2065 47 1 6.2387 -8.3403 -0.0459 48 1 5.8862 -7.2628 2.1400 49 1 1.6381 -5.5669 4.2093 50 1 2.4314 -3.9960 4.6609 There are 69 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 69 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_9456408_13421422.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 14:50:32 Heat of formation + Delta-G solvation = -119.290164 kcal Electronic energy + Delta-G solvation = -35385.066771 eV Core-core repulsion = 30700.542293 eV Total energy + Delta-G solvation = -4684.524478 eV No. of doubly occupied orbitals = 69 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 385.148 amu Computer time = 2.30 seconds Orbital eigenvalues (eV) -41.99007 -40.80798 -40.68304 -38.32092 -37.91962 -37.84986 -36.92906 -35.36851 -34.60285 -33.19065 -33.11043 -32.29550 -28.34513 -28.31251 -27.35377 -26.99865 -25.97757 -24.19887 -23.42339 -23.08062 -21.31979 -20.92670 -20.68732 -19.51965 -19.07115 -18.74966 -18.28012 -17.59795 -17.40171 -17.16720 -16.90885 -16.64323 -16.43598 -16.24692 -16.08242 -15.91454 -15.57602 -15.47099 -15.23819 -14.93593 -14.59963 -14.44527 -14.28452 -14.08406 -13.80722 -13.77873 -13.53504 -13.43117 -13.17610 -13.16605 -13.11556 -12.87844 -12.84811 -12.80430 -12.73982 -12.59295 -12.50940 -12.26805 -12.13311 -11.95359 -11.84166 -11.71829 -11.31746 -11.00196 -10.82207 -10.74492 -10.48309 -10.22557 -10.22136 -5.11231 -0.79689 -0.42260 0.10770 1.08885 1.09381 1.45015 1.75328 1.82686 1.84952 2.24730 2.66162 3.02247 3.13094 3.15936 3.16808 3.29994 3.37664 3.58870 3.64114 3.69004 3.75443 3.80661 3.82093 3.93951 3.95027 4.06592 4.24044 4.30839 4.44709 4.49017 4.50793 4.51172 4.55142 4.61153 4.65298 4.70814 4.72300 4.76486 4.84461 4.85863 4.86645 4.89752 4.90874 4.94073 5.07864 5.15755 5.29665 5.33876 5.44501 5.55000 5.60521 5.69078 6.20557 6.31608 7.37228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.138 3.862 3 C -0.143 4.143 4 C -0.184 4.184 5 O -0.365 6.365 6 C 0.652 3.348 7 O -0.559 6.559 8 N -0.699 5.699 9 C 0.139 3.861 10 H 0.101 0.899 11 C -0.165 4.165 12 C 0.120 3.880 13 H 0.113 0.887 14 N -1.098 6.098 15 S 2.695 3.305 16 O -0.950 6.950 17 O -0.953 6.953 18 C -0.673 4.673 19 C -0.016 4.016 20 C -0.113 4.113 21 C -0.060 4.060 22 C -0.085 4.085 23 O -0.525 6.525 24 Si 0.689 3.311 25 C -0.139 4.139 26 C -0.014 4.014 27 C -0.143 4.143 28 H 0.060 0.940 29 H 0.072 0.928 30 H 0.087 0.913 31 H 0.068 0.932 32 H 0.082 0.918 33 H 0.067 0.933 34 H 0.087 0.913 35 H 0.072 0.928 36 H 0.060 0.940 37 H 0.403 0.597 38 H 0.082 0.918 39 H 0.109 0.891 40 H 0.414 0.586 41 H 0.142 0.858 42 H 0.136 0.864 43 H 0.124 0.876 44 H 0.378 0.622 45 H -0.253 1.253 46 H -0.257 1.257 47 H 0.138 0.862 48 H 0.145 0.855 49 H 0.119 0.881 50 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.416 -1.000 0.076 4.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.101 3.899 3 C -0.200 4.200 4 C -0.241 4.241 5 O -0.280 6.280 6 C 0.406 3.594 7 O -0.447 6.447 8 N -0.360 5.360 9 C 0.035 3.965 10 H 0.119 0.881 11 C -0.205 4.205 12 C 0.012 3.988 13 H 0.131 0.869 14 N -0.857 5.857 15 S 2.784 3.216 16 O -0.940 6.940 17 O -0.943 6.943 18 C -0.760 4.760 19 C -0.035 4.035 20 C -0.132 4.132 21 C -0.061 4.061 22 C -0.194 4.194 23 O -0.331 6.331 24 Si 0.589 3.411 25 C -0.157 4.157 26 C -0.033 4.033 27 C -0.183 4.183 28 H 0.079 0.921 29 H 0.091 0.909 30 H 0.106 0.894 31 H 0.087 0.913 32 H 0.101 0.899 33 H 0.086 0.914 34 H 0.106 0.894 35 H 0.091 0.909 36 H 0.079 0.921 37 H 0.239 0.761 38 H 0.101 0.899 39 H 0.127 0.873 40 H 0.250 0.750 41 H 0.160 0.840 42 H 0.154 0.846 43 H 0.142 0.858 44 H 0.226 0.774 45 H -0.178 1.178 46 H -0.182 1.182 47 H 0.155 0.845 48 H 0.163 0.837 49 H 0.137 0.863 50 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -4.076 -1.760 -0.338 4.453 hybrid contribution 1.133 0.752 -0.298 1.392 sum -2.944 -1.008 -0.636 3.176 Atomic orbital electron populations 1.22525 0.93810 1.05057 1.02748 1.22122 0.94445 0.91547 0.81763 1.21888 1.02398 0.92340 1.03373 1.22523 1.01596 1.03445 0.96569 1.86311 1.71476 1.23381 1.46823 1.18051 0.78728 0.80574 0.82076 1.90928 1.40522 1.70474 1.42825 1.44513 1.55761 1.11739 1.23942 1.21823 0.99689 0.78245 0.96771 0.88100 1.23951 0.97782 1.00765 0.98016 1.21836 0.88116 0.91564 0.97283 0.86873 1.55479 1.23790 1.15710 1.90698 1.01943 0.72024 0.73671 0.73918 1.93618 1.84448 1.59997 1.55894 1.93629 1.67827 1.45825 1.87055 1.30946 1.17425 1.05181 1.22432 1.20979 0.91253 1.00048 0.91241 1.21187 0.99795 0.94224 0.97945 1.20680 0.95054 0.94705 0.95631 1.25206 0.86372 1.12317 0.95542 1.86634 1.14872 1.79853 1.51779 0.94919 0.91593 0.73624 0.80916 1.21197 1.01643 1.00110 0.92791 1.20882 0.92326 0.92294 0.97825 1.23649 0.96174 1.02123 0.96328 0.92099 0.90934 0.89400 0.91340 0.89921 0.91358 0.89397 0.90933 0.92133 0.76113 0.89935 0.87299 0.74971 0.84038 0.84578 0.85813 0.77408 1.17806 1.18179 0.84507 0.83746 0.86299 0.89488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 25. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.13 8.37 37.16 0.31 0.18 16 2 C 0.14 0.09 1.13 -90.62 -0.10 -0.01 16 3 C -0.14 0.15 8.85 37.16 0.33 0.48 16 4 C -0.18 -0.12 8.37 37.16 0.31 0.19 16 5 O -0.37 -0.55 9.94 -40.31 -0.40 -0.95 16 6 C 0.65 0.96 8.06 54.05 0.44 1.39 16 7 O -0.56 -2.03 11.85 -19.28 -0.23 -2.26 16 8 N -0.70 1.14 4.59 -57.93 -0.27 0.87 16 9 C 0.14 -0.40 3.97 -67.12 -0.27 -0.66 16 10 H 0.10 -0.21 8.10 -51.93 -0.42 -0.63 16 11 C -0.16 0.54 7.68 -25.92 -0.20 0.34 16 12 C 0.12 -0.44 4.51 -67.12 -0.30 -0.75 16 13 H 0.11 -0.52 7.76 -51.93 -0.40 -0.93 16 14 N -1.10 2.65 5.66 -4.20 -0.02 2.62 16 15 S 2.70 1.45 5.71 -107.50 -0.61 0.83 16 16 O -0.95 -2.84 16.79 -57.17 -0.96 -3.80 16 17 O -0.95 -3.44 17.28 -57.17 -0.99 -4.43 16 18 C -0.67 0.00 5.95 -39.59 -0.24 -0.23 16 19 C -0.02 0.00 9.52 -39.59 -0.38 -0.38 16 20 C -0.11 0.01 9.69 -39.59 -0.38 -0.37 16 21 C -0.06 0.04 5.35 -104.62 -0.56 -0.51 16 22 C -0.08 0.10 2.80 36.01 0.10 0.20 16 23 O -0.52 -0.23 12.83 -35.23 -0.45 -0.68 16 24 Si 0.69 -1.35 29.87 -169.99 -5.08 -6.42 16 25 C -0.14 0.19 8.67 -39.59 -0.34 -0.16 16 26 C -0.01 0.01 9.52 -39.59 -0.38 -0.36 16 27 C -0.14 0.68 7.56 -25.92 -0.20 0.48 16 28 H 0.06 0.03 8.14 -51.93 -0.42 -0.39 16 29 H 0.07 -0.04 8.14 -51.93 -0.42 -0.46 16 30 H 0.09 0.23 5.88 -51.93 -0.31 -0.07 16 31 H 0.07 -0.07 8.14 -51.93 -0.42 -0.49 16 32 H 0.08 -0.19 8.14 -51.93 -0.42 -0.61 16 33 H 0.07 -0.07 8.14 -51.93 -0.42 -0.50 16 34 H 0.09 0.22 5.88 -51.93 -0.31 -0.09 16 35 H 0.07 -0.04 8.14 -51.93 -0.42 -0.46 16 36 H 0.06 0.03 8.14 -51.93 -0.42 -0.40 16 37 H 0.40 -1.36 7.26 -40.82 -0.30 -1.66 16 38 H 0.08 -0.12 8.14 -51.93 -0.42 -0.54 16 39 H 0.11 -0.52 8.14 -51.93 -0.42 -0.94 16 40 H 0.41 -1.39 6.61 -34.47 -0.23 -1.62 16 41 H 0.14 -0.10 7.62 -52.48 -0.40 -0.50 16 42 H 0.14 -0.13 8.06 -52.48 -0.42 -0.55 16 43 H 0.12 -0.25 7.96 -51.93 -0.41 -0.67 16 44 H 0.38 -0.86 8.70 45.56 0.40 -0.46 16 45 H -0.25 -0.38 7.11 56.52 0.40 0.02 16 46 H -0.26 0.03 7.02 56.52 0.40 0.43 16 47 H 0.14 -0.45 4.85 -52.49 -0.25 -0.70 16 48 H 0.14 -0.39 7.62 -52.48 -0.40 -0.79 16 49 H 0.12 -0.75 8.14 -51.93 -0.42 -1.17 16 50 H 0.09 -0.43 8.12 -51.93 -0.42 -0.85 16 LS Contribution 414.48 15.07 6.25 6.25 Total: 0.00 -11.22 414.48 -11.92 -23.15 By element: Atomic # 1 Polarization: -7.71 SS G_CDS: -7.30 Total: -15.01 kcal Atomic # 6 Polarization: 1.69 SS G_CDS: -1.85 Total: -0.16 kcal Atomic # 7 Polarization: 3.78 SS G_CDS: -0.29 Total: 3.49 kcal Atomic # 8 Polarization: -9.09 SS G_CDS: -3.03 Total: -12.12 kcal Atomic # 14 Polarization: -1.35 SS G_CDS: -5.08 Total: -6.42 kcal Atomic # 16 Polarization: 1.45 SS G_CDS: -0.61 Total: 0.83 kcal Total LS contribution 6.25 Total: 6.25 kcal Total: -11.22 -11.92 -23.15 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_9456408_13421422.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.143 kcal (2) G-P(sol) polarization free energy of solvation -11.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.147 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.30 seconds