Wall clock time and date at job start Mon Mar 8 2021 14:50:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.47007 * 2 1 4 4 C 1.53000 * 109.47273 * 240.00069 * 2 1 3 5 5 O 1.45205 * 109.47008 * 120.00089 * 2 1 3 6 6 C 1.34635 * 116.99905 * 60.00145 * 5 2 1 7 7 O 1.21507 * 119.99978 * 359.97438 * 6 5 2 8 8 N 1.34773 * 119.99676 * 179.97438 * 6 5 2 9 9 C 1.46503 * 119.99979 * 179.97438 * 8 6 5 10 10 H 1.09003 * 112.90754 * 311.60720 * 9 8 6 11 11 C 1.53779 * 113.61146 * 82.85482 * 9 8 6 12 12 C 1.53779 * 87.08098 * 89.11892 * 11 9 8 13 13 H 1.09002 * 113.61476 * 140.06368 * 12 11 9 14 14 N 1.46503 * 113.61235 * 270.88031 * 12 11 9 15 15 S 1.65601 * 120.00062 * 244.49037 * 14 12 11 16 16 O 1.42094 * 106.40130 * 311.46394 * 15 14 12 17 17 O 1.42104 * 106.39748 * 178.53999 * 15 14 12 18 18 C 1.76204 * 107.21571 * 65.00527 * 15 14 12 19 19 C 1.38234 * 120.00076 * 89.99588 * 18 15 14 20 20 C 1.38227 * 120.00148 * 180.02562 * 19 18 15 21 21 C 1.38238 * 119.99738 * 0.02562 * 20 19 18 22 22 C 1.50707 * 119.99982 * 179.97438 * 21 20 19 23 23 O 1.42897 * 109.47018 * 64.99861 * 22 21 20 24 24 Si 1.86292 * 109.47179 * 184.99723 * 22 21 20 25 25 C 1.38233 * 120.00135 * 0.25144 * 21 20 19 26 26 C 1.38229 * 120.00000 * 270.01857 * 18 15 14 27 27 C 1.53776 * 87.08233 * 25.43161 * 12 11 9 28 28 H 1.09005 * 109.47480 * 299.99991 * 1 2 3 29 29 H 1.09004 * 109.47431 * 60.00076 * 1 2 3 30 30 H 1.08995 * 109.47204 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.47182 * 179.97438 * 3 2 1 32 32 H 1.08996 * 109.47247 * 300.00128 * 3 2 1 33 33 H 1.09005 * 109.46993 * 59.99710 * 3 2 1 34 34 H 1.08995 * 109.46998 * 300.00116 * 4 2 1 35 35 H 1.09004 * 109.47010 * 59.99597 * 4 2 1 36 36 H 1.08995 * 109.46968 * 179.97438 * 4 2 1 37 37 H 0.97002 * 120.00676 * 0.02562 * 8 6 5 38 38 H 1.08998 * 113.61717 * 334.56592 * 11 9 8 39 39 H 1.08999 * 113.61717 * 203.66779 * 11 9 8 40 40 H 0.96997 * 119.99580 * 64.49831 * 14 12 11 41 41 H 1.08006 * 119.99988 * 0.02562 * 19 18 15 42 42 H 1.08005 * 120.00389 * 179.97438 * 20 19 18 43 43 H 1.09000 * 109.46766 * 304.99799 * 22 21 20 44 44 H 0.96698 * 114.00384 * 60.00193 * 23 22 21 45 45 H 1.48500 * 110.00272 * 179.97438 * 24 22 21 46 46 H 1.48502 * 110.00485 * 301.32115 * 24 22 21 47 47 H 1.08002 * 120.00151 * 179.72608 * 25 21 20 48 48 H 1.08004 * 119.99821 * 0.02562 * 26 18 15 49 49 H 1.09004 * 113.61482 * 89.11418 * 27 12 11 50 50 H 1.08999 * 113.61892 * 220.02064 * 27 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 8 2.0140 -0.6845 1.1856 6 6 1.6522 -1.9723 1.3383 7 8 0.9509 -2.5094 0.5040 8 7 2.0680 -2.6657 2.4166 9 6 1.6740 -4.0669 2.5831 10 1 0.6061 -4.2278 2.4349 11 6 2.5596 -5.0527 1.8029 12 6 3.4627 -5.1034 3.0466 13 1 3.8401 -6.1009 3.2717 14 7 4.5140 -4.0832 3.0504 15 16 6.1060 -4.5345 2.9858 16 8 6.2760 -5.5476 3.9674 17 8 6.8635 -3.3323 2.9702 18 6 6.3662 -5.3067 1.4235 19 6 6.7496 -4.5486 0.3330 20 6 6.9532 -5.1542 -0.8927 21 6 6.7728 -6.5181 -1.0281 22 6 6.9942 -7.1784 -2.3646 23 8 8.3713 -7.0659 -2.7292 24 14 6.5265 -8.9782 -2.2531 25 6 6.3839 -7.2754 0.0610 26 6 6.1865 -6.6706 1.2881 27 6 2.2220 -4.7126 3.8667 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 3.1299 1.4426 0.0005 32 1 1.6766 1.9564 -0.8899 33 1 1.6766 1.9564 0.8900 34 1 1.6767 -1.7488 -1.2492 35 1 1.6766 -0.2074 -2.1392 36 1 3.1300 -0.7208 -1.2494 37 1 2.6276 -2.2369 3.0829 38 1 3.0416 -4.6107 0.9310 39 1 2.0681 -6.0000 1.5813 40 1 4.2776 -3.1433 3.0908 41 1 6.8901 -3.4829 0.4387 42 1 7.2523 -4.5618 -1.7448 43 1 6.3775 -6.6888 -3.1183 44 1 8.9794 -7.4804 -2.1020 45 1 6.7397 -9.6407 -3.5649 46 1 7.3380 -9.6501 -1.2065 47 1 6.2387 -8.3403 -0.0459 48 1 5.8862 -7.2628 2.1400 49 1 1.6381 -5.5669 4.2093 50 1 2.4314 -3.9960 4.6609 There are 69 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 69 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_9456408_13421422.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 14:50:30 Heat of formation + Delta-G solvation = -123.582458 kcal Electronic energy + Delta-G solvation = -35385.252899 eV Core-core repulsion = 30700.542293 eV Total energy + Delta-G solvation = -4684.710606 eV No. of doubly occupied orbitals = 69 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 385.148 amu Computer time = 1.45 seconds Orbital eigenvalues (eV) -41.97790 -40.73223 -40.54680 -38.46342 -37.91089 -37.86984 -37.07985 -35.40575 -34.54230 -33.08531 -33.04868 -32.22595 -28.37272 -28.31483 -27.28375 -26.70505 -25.81837 -24.13142 -23.37703 -23.02944 -21.30225 -20.77958 -20.66178 -19.49595 -19.07039 -18.74485 -18.28702 -17.60355 -17.32946 -17.20108 -16.79501 -16.58882 -16.37045 -16.17592 -15.94427 -15.84222 -15.60453 -15.46968 -15.26545 -14.85672 -14.56368 -14.46549 -14.10707 -14.02455 -13.76267 -13.68731 -13.41024 -13.35465 -13.33928 -13.27715 -13.09798 -12.91936 -12.87116 -12.71051 -12.64932 -12.57888 -12.52703 -12.28638 -12.02326 -11.85342 -11.78981 -11.53998 -11.38366 -11.09983 -10.76074 -10.57602 -10.40290 -10.16557 -10.11873 -4.97967 -0.79828 -0.40210 0.17164 1.14209 1.20639 1.54808 1.74828 1.84055 1.91385 2.29066 2.65632 3.11168 3.16060 3.28367 3.43786 3.47009 3.54613 3.72252 3.73455 3.78678 3.79955 3.86035 3.93578 4.10414 4.14538 4.17195 4.32336 4.40962 4.51290 4.59343 4.60417 4.64386 4.74244 4.75812 4.81141 4.83184 4.86616 4.88348 4.89382 4.91972 4.95943 4.99106 5.08875 5.11580 5.17834 5.22241 5.26430 5.31535 5.49791 5.64142 5.67717 5.88985 6.35767 6.36282 7.34227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.129 3.871 3 C -0.140 4.140 4 C -0.180 4.180 5 O -0.372 6.372 6 C 0.645 3.355 7 O -0.585 6.585 8 N -0.688 5.688 9 C 0.127 3.873 10 H 0.094 0.906 11 C -0.161 4.161 12 C 0.113 3.887 13 H 0.129 0.871 14 N -1.090 6.090 15 S 2.712 3.288 16 O -0.974 6.974 17 O -0.990 6.990 18 C -0.677 4.677 19 C -0.029 4.029 20 C -0.123 4.123 21 C -0.061 4.061 22 C -0.094 4.094 23 O -0.545 6.545 24 Si 0.773 3.227 25 C -0.139 4.139 26 C -0.018 4.018 27 C -0.129 4.129 28 H 0.061 0.939 29 H 0.085 0.915 30 H 0.066 0.934 31 H 0.068 0.932 32 H 0.097 0.903 33 H 0.069 0.931 34 H 0.067 0.933 35 H 0.085 0.915 36 H 0.060 0.940 37 H 0.411 0.589 38 H 0.062 0.938 39 H 0.127 0.873 40 H 0.418 0.582 41 H 0.142 0.858 42 H 0.139 0.861 43 H 0.131 0.869 44 H 0.388 0.612 45 H -0.302 1.302 46 H -0.276 1.276 47 H 0.158 0.842 48 H 0.164 0.836 49 H 0.142 0.858 50 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.064 -1.627 0.659 5.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.093 3.907 3 C -0.197 4.197 4 C -0.237 4.237 5 O -0.287 6.287 6 C 0.399 3.601 7 O -0.475 6.475 8 N -0.349 5.349 9 C 0.024 3.976 10 H 0.112 0.888 11 C -0.201 4.201 12 C 0.006 3.994 13 H 0.146 0.854 14 N -0.851 5.851 15 S 2.803 3.197 16 O -0.964 6.964 17 O -0.980 6.980 18 C -0.765 4.765 19 C -0.048 4.048 20 C -0.142 4.142 21 C -0.062 4.062 22 C -0.202 4.202 23 O -0.354 6.354 24 Si 0.678 3.322 25 C -0.157 4.157 26 C -0.037 4.037 27 C -0.168 4.168 28 H 0.080 0.920 29 H 0.104 0.896 30 H 0.085 0.915 31 H 0.087 0.913 32 H 0.116 0.884 33 H 0.088 0.912 34 H 0.086 0.914 35 H 0.103 0.897 36 H 0.079 0.921 37 H 0.248 0.752 38 H 0.081 0.919 39 H 0.145 0.855 40 H 0.256 0.744 41 H 0.160 0.840 42 H 0.157 0.843 43 H 0.148 0.852 44 H 0.237 0.763 45 H -0.230 1.230 46 H -0.202 1.202 47 H 0.175 0.825 48 H 0.182 0.818 49 H 0.160 0.840 50 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -4.718 -2.358 0.295 5.282 hybrid contribution 1.318 0.922 -0.547 1.699 sum -3.399 -1.436 -0.252 3.699 Atomic orbital electron populations 1.22472 0.93956 1.03835 1.03424 1.22311 0.94462 0.92415 0.81529 1.21903 1.02401 0.91173 1.04198 1.22469 1.01524 1.02407 0.97280 1.86312 1.71595 1.23529 1.47242 1.18309 0.78713 0.80599 0.82529 1.90910 1.41799 1.70908 1.43920 1.44575 1.55103 1.12162 1.23099 1.22026 0.99500 0.77620 0.98486 0.88835 1.23974 0.97641 1.01253 0.97275 1.22069 0.88055 0.91839 0.97485 0.85372 1.55242 1.23009 1.16346 1.90464 1.01161 0.72242 0.72601 0.73683 1.93580 1.85182 1.60543 1.57119 1.93575 1.69479 1.47305 1.87621 1.30834 1.18121 1.05762 1.21778 1.21079 0.91824 1.00332 0.91611 1.21303 1.00164 0.94803 0.97953 1.20767 0.94870 0.94503 0.96045 1.25450 0.85848 1.13355 0.95587 1.86603 1.15818 1.80329 1.52603 0.93981 0.90067 0.71032 0.77160 1.21437 1.00901 1.01075 0.92322 1.21182 0.91818 0.91994 0.98703 1.23687 0.95149 1.02667 0.95335 0.92011 0.89632 0.91489 0.91321 0.88420 0.91209 0.91429 0.89653 0.92117 0.75152 0.91901 0.85486 0.74435 0.84020 0.84335 0.85153 0.76286 1.23035 1.20180 0.82459 0.81846 0.83968 0.88964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.39 8.37 71.98 0.60 0.21 16 2 C 0.13 0.26 1.13 -10.79 -0.01 0.25 16 3 C -0.14 0.31 8.85 71.98 0.64 0.95 16 4 C -0.18 -0.39 8.37 71.98 0.60 0.21 16 5 O -0.37 -1.49 9.94 -55.44 -0.55 -2.04 16 6 C 0.65 2.66 8.06 129.79 1.05 3.71 16 7 O -0.59 -5.22 11.85 19.82 0.23 -4.99 16 8 N -0.69 1.86 4.59 -567.62 -2.60 -0.74 16 9 C 0.13 -0.74 3.97 45.52 0.18 -0.56 16 10 H 0.09 -0.38 8.10 -2.39 -0.02 -0.40 16 11 C -0.16 1.12 7.68 31.12 0.24 1.36 16 12 C 0.11 -0.93 4.51 45.51 0.21 -0.73 16 13 H 0.13 -1.40 7.76 -2.39 -0.02 -1.42 16 14 N -1.09 5.16 5.66 -167.20 -0.95 4.21 16 15 S 2.71 4.42 5.71 -56.49 -0.32 4.10 16 16 O -0.97 -5.85 16.79 -128.00 -2.15 -8.00 16 17 O -0.99 -8.48 17.28 -128.00 -2.21 -10.69 16 18 C -0.68 -0.23 5.95 22.27 0.13 -0.09 16 19 C -0.03 -0.04 9.52 22.27 0.21 0.17 16 20 C -0.12 -0.05 9.69 22.27 0.22 0.17 16 21 C -0.06 0.10 5.35 -19.86 -0.11 0.00 16 22 C -0.09 0.24 2.80 71.24 0.20 0.44 16 23 O -0.55 -0.61 12.83 -148.98 -1.91 -2.53 16 24 Si 0.77 -3.36 29.87 68.60 2.05 -1.31 16 25 C -0.14 0.50 8.67 22.27 0.19 0.69 16 26 C -0.02 0.05 9.52 22.27 0.21 0.26 16 27 C -0.13 1.40 7.56 31.12 0.24 1.63 16 28 H 0.06 0.10 8.14 -2.38 -0.02 0.08 16 29 H 0.08 -0.08 8.14 -2.38 -0.02 -0.10 16 30 H 0.07 0.46 5.88 -2.39 -0.01 0.45 16 31 H 0.07 -0.14 8.14 -2.39 -0.02 -0.16 16 32 H 0.10 -0.52 8.14 -2.39 -0.02 -0.54 16 33 H 0.07 -0.16 8.14 -2.38 -0.02 -0.18 16 34 H 0.07 0.46 5.88 -2.39 -0.01 0.44 16 35 H 0.08 -0.08 8.14 -2.38 -0.02 -0.09 16 36 H 0.06 0.11 8.14 -2.39 -0.02 0.09 16 37 H 0.41 -2.64 7.26 -92.71 -0.67 -3.32 16 38 H 0.06 -0.14 8.14 -2.39 -0.02 -0.16 16 39 H 0.13 -1.36 8.14 -2.39 -0.02 -1.38 16 40 H 0.42 -2.64 6.61 -96.75 -0.64 -3.27 16 41 H 0.14 0.05 7.62 -2.91 -0.02 0.03 16 42 H 0.14 -0.11 8.06 -2.91 -0.02 -0.14 16 43 H 0.13 -0.54 7.96 -2.39 -0.02 -0.56 16 44 H 0.39 -1.68 8.70 -74.06 -0.64 -2.32 16 45 H -0.30 -1.19 7.11 99.48 0.71 -0.48 16 46 H -0.28 0.34 7.02 99.48 0.70 1.04 16 47 H 0.16 -1.30 4.85 -2.91 -0.01 -1.31 16 48 H 0.16 -1.11 7.62 -2.91 -0.02 -1.14 16 49 H 0.14 -2.14 8.14 -2.38 -0.02 -2.16 16 50 H 0.09 -1.04 8.12 -2.39 -0.02 -1.06 16 Total: 0.00 -26.84 414.48 -4.55 -31.39 By element: Atomic # 1 Polarization: -17.14 SS G_CDS: -0.93 Total: -18.07 kcal Atomic # 6 Polarization: 3.87 SS G_CDS: 4.79 Total: 8.66 kcal Atomic # 7 Polarization: 7.02 SS G_CDS: -3.55 Total: 3.47 kcal Atomic # 8 Polarization: -21.66 SS G_CDS: -6.59 Total: -28.25 kcal Atomic # 14 Polarization: -3.36 SS G_CDS: 2.05 Total: -1.31 kcal Atomic # 16 Polarization: 4.42 SS G_CDS: -0.32 Total: 4.10 kcal Total: -26.84 -4.55 -31.39 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_9456408_13421422.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.192 kcal (2) G-P(sol) polarization free energy of solvation -26.841 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.391 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.45 seconds