Wall clock time and date at job start Mon Mar 8 2021 14:50:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53003 * 109.47008 * 2 1 4 4 C 1.53001 * 109.46864 * 240.00487 * 2 1 3 5 5 O 1.45198 * 109.47198 * 120.00144 * 2 1 3 6 6 C 1.34635 * 116.99781 * 59.99794 * 5 2 1 7 7 O 1.21512 * 120.00273 * 0.02562 * 6 5 2 8 8 N 1.34773 * 120.00103 * 180.02562 * 6 5 2 9 9 C 1.46497 * 120.00333 * 180.02562 * 8 6 5 10 10 H 1.09004 * 112.84924 * 336.19574 * 9 8 6 11 11 C 1.53784 * 113.69074 * 107.46317 * 9 8 6 12 12 C 1.53785 * 87.07858 * 139.99466 * 11 9 8 13 13 H 1.09004 * 113.69251 * 89.13410 * 12 11 9 14 14 N 1.46508 * 113.61183 * 220.01792 * 12 11 9 15 15 S 1.65595 * 119.99876 * 242.49836 * 14 12 11 16 16 O 1.42105 * 106.40149 * 178.54167 * 15 14 12 17 17 O 1.42098 * 106.40317 * 311.46040 * 15 14 12 18 18 C 1.76204 * 107.21987 * 65.00402 * 15 14 12 19 19 C 1.33384 * 125.20254 * 179.71997 * 18 15 14 20 20 C 1.50698 * 122.54310 * 0.02562 * 19 18 15 21 21 O 1.42903 * 109.46808 * 285.00059 * 20 19 18 22 22 Si 1.86300 * 109.47449 * 165.00079 * 20 19 18 23 23 C 1.38426 * 114.91922 * 179.85421 * 19 18 15 24 24 C 1.33390 * 114.92209 * 0.43083 * 23 19 18 25 25 S 1.75879 * 125.20242 * 0.02562 * 18 15 14 26 26 C 1.53776 * 87.08429 * 334.56620 * 12 11 9 27 27 H 1.09003 * 109.47102 * 300.00221 * 1 2 3 28 28 H 1.09005 * 109.46808 * 59.99613 * 1 2 3 29 29 H 1.08994 * 109.47283 * 179.97438 * 1 2 3 30 30 H 1.09007 * 109.46872 * 179.97438 * 3 2 1 31 31 H 1.09000 * 109.47377 * 300.00224 * 3 2 1 32 32 H 1.09001 * 109.46706 * 60.00589 * 3 2 1 33 33 H 1.08999 * 109.46720 * 299.99520 * 4 2 1 34 34 H 1.09000 * 109.47338 * 59.99889 * 4 2 1 35 35 H 1.09007 * 109.46816 * 180.02562 * 4 2 1 36 36 H 0.97007 * 120.00015 * 0.02562 * 8 6 5 37 37 H 1.08999 * 113.61434 * 25.44921 * 11 9 8 38 38 H 1.09004 * 113.61452 * 254.54003 * 11 9 8 39 39 H 0.96997 * 120.00091 * 62.49808 * 14 12 11 40 40 H 1.09006 * 109.47092 * 44.99563 * 20 19 18 41 41 H 0.96699 * 114.00292 * 299.99851 * 21 20 19 42 42 H 1.48503 * 109.99951 * 58.68049 * 22 20 19 43 43 H 1.48503 * 109.99735 * 179.97438 * 22 20 19 44 44 H 1.08006 * 122.54105 * 180.19706 * 23 19 18 45 45 H 1.07998 * 125.20368 * 179.74495 * 24 23 19 46 46 H 1.08993 * 113.61383 * 139.97706 * 26 12 11 47 47 H 1.08996 * 113.61559 * 270.88920 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 8 2.0140 -0.6845 1.1855 6 6 1.6522 -1.9723 1.3382 7 8 0.9516 -2.5097 0.5035 8 7 2.0672 -2.6655 2.4170 9 6 1.6740 -4.0669 2.5829 10 1 0.7600 -4.3167 2.0440 11 6 2.8213 -5.0629 2.3449 12 6 2.2716 -5.8605 3.5394 13 1 1.5211 -6.6013 3.2633 14 7 3.3153 -6.4057 4.4111 15 16 3.4677 -8.0443 4.5953 16 8 4.5752 -8.2494 5.4618 17 8 2.1645 -8.5403 4.8689 18 6 3.9326 -8.7043 3.0290 19 6 4.1565 -9.9942 2.7740 20 6 4.0323 -11.0627 3.8294 21 8 5.1601 -11.0010 4.7047 22 14 3.9698 -12.7367 3.0141 23 6 4.5080 -10.2776 1.4654 24 6 4.5784 -9.2166 0.6600 25 16 4.1798 -7.7619 1.5647 26 6 1.6741 -4.5376 4.0470 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 3.1301 1.4425 0.0005 31 1 1.6767 1.9564 -0.8899 32 1 1.6767 1.9563 0.8901 33 1 1.6767 -1.7488 -1.2493 34 1 1.6766 -0.2073 -2.1393 35 1 3.1300 -0.7216 -1.2491 36 1 2.6262 -2.2364 3.0836 37 1 3.8103 -4.6397 2.5205 38 1 2.7491 -5.5933 1.3954 39 1 3.9171 -5.8069 4.8803 40 1 3.1187 -10.9031 4.4022 41 1 6.0094 -11.1346 4.2620 42 1 5.1956 -12.9533 2.2044 43 1 3.8479 -13.7991 4.0445 44 1 4.7136 -11.2812 1.1234 45 1 4.8405 -9.2463 -0.3873 46 1 0.6758 -4.6439 4.4714 47 1 2.3495 -3.9708 4.6877 There are 67 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 67 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_9456408_13652106.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 14:50:37 Heat of formation + Delta-G solvation = -112.957302 kcal Electronic energy + Delta-G solvation = -32915.449979 eV Core-core repulsion = 28320.352360 eV Total energy + Delta-G solvation = -4595.097619 eV No. of doubly occupied orbitals = 67 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 391.105 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.86064 -40.60736 -40.08998 -38.14521 -37.94590 -37.19225 -36.79641 -35.60993 -34.86643 -33.05523 -31.50330 -28.35162 -28.31140 -28.05783 -27.05563 -25.80004 -24.40119 -23.13655 -21.83251 -21.49757 -20.87124 -19.99431 -19.79431 -19.14659 -18.59480 -18.11115 -17.95573 -17.25186 -17.11277 -16.81758 -16.45856 -16.24191 -16.15878 -15.92537 -15.53671 -15.40975 -15.32936 -15.22704 -14.56703 -14.39188 -14.20801 -14.08489 -13.77552 -13.64315 -13.57070 -13.42963 -13.20593 -13.06559 -12.99044 -12.88027 -12.85046 -12.74591 -12.65106 -12.64115 -12.50550 -12.27448 -12.23053 -12.17866 -12.08439 -11.62735 -11.32334 -10.99477 -10.76478 -10.71450 -10.45713 -10.21723 -9.70999 -5.03984 -0.70504 -0.69120 0.18792 0.55778 1.13113 1.14627 1.18612 1.49802 1.82917 1.87694 1.90136 2.62132 3.05888 3.17736 3.19921 3.24988 3.41019 3.53283 3.59400 3.62427 3.75262 3.80900 3.89636 3.94799 3.96425 4.06731 4.28825 4.38097 4.41441 4.42320 4.54081 4.60668 4.60753 4.64823 4.68744 4.74983 4.75913 4.79367 4.84870 4.90760 4.98075 5.01846 5.07324 5.26455 5.33972 5.43473 5.56944 5.71699 6.32473 6.36542 7.38333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.137 3.863 3 C -0.142 4.142 4 C -0.184 4.184 5 O -0.365 6.365 6 C 0.651 3.349 7 O -0.565 6.565 8 N -0.700 5.700 9 C 0.145 3.855 10 H 0.127 0.873 11 C -0.176 4.176 12 C 0.121 3.879 13 H 0.128 0.872 14 N -1.104 6.104 15 S 2.715 3.285 16 O -0.930 6.930 17 O -0.944 6.944 18 C -0.768 4.768 19 C 0.007 3.993 20 C -0.105 4.105 21 O -0.508 6.508 22 Si 0.710 3.290 23 C -0.164 4.164 24 C -0.167 4.167 25 S 0.213 5.787 26 C -0.147 4.147 27 H 0.060 0.940 28 H 0.072 0.928 29 H 0.087 0.913 30 H 0.067 0.933 31 H 0.082 0.918 32 H 0.067 0.933 33 H 0.087 0.913 34 H 0.072 0.928 35 H 0.059 0.941 36 H 0.407 0.593 37 H 0.100 0.900 38 H 0.088 0.912 39 H 0.423 0.577 40 H 0.127 0.873 41 H 0.379 0.621 42 H -0.254 1.254 43 H -0.248 1.248 44 H 0.155 0.845 45 H 0.178 0.822 46 H 0.092 0.908 47 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.277 3.000 -4.582 5.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.100 3.900 3 C -0.199 4.199 4 C -0.241 4.241 5 O -0.280 6.280 6 C 0.404 3.596 7 O -0.454 6.454 8 N -0.359 5.359 9 C 0.040 3.960 10 H 0.145 0.855 11 C -0.218 4.218 12 C 0.013 3.987 13 H 0.146 0.854 14 N -0.864 5.864 15 S 2.799 3.201 16 O -0.920 6.920 17 O -0.934 6.934 18 C -0.968 4.968 19 C -0.010 4.010 20 C -0.217 4.217 21 O -0.314 6.314 22 Si 0.609 3.391 23 C -0.194 4.194 24 C -0.304 4.304 25 S 0.480 5.520 26 C -0.187 4.187 27 H 0.079 0.921 28 H 0.091 0.909 29 H 0.106 0.894 30 H 0.086 0.914 31 H 0.101 0.899 32 H 0.086 0.914 33 H 0.106 0.894 34 H 0.091 0.909 35 H 0.078 0.922 36 H 0.243 0.757 37 H 0.118 0.882 38 H 0.106 0.894 39 H 0.259 0.741 40 H 0.145 0.855 41 H 0.226 0.774 42 H -0.178 1.178 43 H -0.172 1.172 44 H 0.173 0.827 45 H 0.195 0.805 46 H 0.111 0.889 47 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -0.493 3.090 -4.448 5.438 hybrid contribution 1.986 -0.476 0.147 2.048 sum 1.494 2.614 -4.301 5.250 Atomic orbital electron populations 1.22526 0.93795 1.05073 1.02747 1.22121 0.94469 0.91544 0.81825 1.21884 1.02317 0.92379 1.03364 1.22523 1.01568 1.03463 0.96563 1.86310 1.71453 1.23454 1.46764 1.18156 0.78587 0.80576 0.82235 1.90920 1.40906 1.70507 1.43035 1.44666 1.55492 1.11938 1.23774 1.22307 0.98989 0.77722 0.97027 0.85477 1.24234 1.00351 0.97715 0.99452 1.22205 0.89922 0.96030 0.90539 0.85440 1.55569 1.44240 1.26174 1.60433 1.01631 0.74271 0.71867 0.72333 1.93672 1.53591 1.83569 1.61127 1.93630 1.39126 1.78472 1.82149 1.35715 1.27099 1.07514 1.26441 1.18952 0.93740 0.92846 0.95469 1.25338 0.93531 1.07447 0.95336 1.86786 1.16095 1.93760 1.34806 0.94599 0.88151 0.73868 0.82476 1.20322 1.05522 1.01094 0.92426 1.26210 1.03290 0.96418 1.04506 1.84260 1.63685 1.07336 0.96717 1.23769 1.03441 0.95215 0.96270 0.92096 0.90932 0.89389 0.91416 0.89921 0.91382 0.89393 0.90933 0.92161 0.75717 0.88188 0.89388 0.74099 0.85493 0.77364 1.17835 1.17247 0.82743 0.80501 0.88910 0.88245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.12 8.37 37.16 0.31 0.19 16 2 C 0.14 0.08 1.13 -90.62 -0.10 -0.02 16 3 C -0.14 0.18 8.85 37.16 0.33 0.50 16 4 C -0.18 -0.10 8.37 37.16 0.31 0.21 16 5 O -0.37 -0.55 9.94 -40.31 -0.40 -0.95 16 6 C 0.65 1.00 8.06 54.05 0.44 1.43 16 7 O -0.56 -2.12 11.48 -19.28 -0.22 -2.34 16 8 N -0.70 1.17 5.36 -57.93 -0.31 0.86 16 9 C 0.14 -0.38 4.24 -67.11 -0.28 -0.67 16 10 H 0.13 -0.21 7.46 -51.93 -0.39 -0.60 16 11 C -0.18 0.59 6.31 -25.91 -0.16 0.43 16 12 C 0.12 -0.35 3.82 -67.11 -0.26 -0.61 16 13 H 0.13 -0.39 7.77 -51.93 -0.40 -0.79 16 14 N -1.10 2.13 5.60 -4.19 -0.02 2.10 16 15 S 2.71 5.46 5.04 -107.50 -0.54 4.92 16 16 O -0.93 -4.87 17.41 -59.76 -1.04 -5.91 16 17 O -0.94 -4.19 17.04 -57.17 -0.97 -5.16 16 18 C -0.77 -0.73 6.46 29.04 0.19 -0.54 16 19 C 0.01 0.01 5.13 -106.25 -0.55 -0.54 16 20 C -0.11 -0.15 2.33 36.00 0.08 -0.06 16 21 O -0.51 -1.47 12.27 -36.45 -0.45 -1.92 16 22 Si 0.71 -0.61 30.45 -169.99 -5.18 -5.79 16 23 C -0.16 0.17 8.74 -41.21 -0.36 -0.19 16 24 C -0.17 0.32 11.23 29.04 0.33 0.65 16 25 S 0.21 -0.34 19.80 -107.50 -2.13 -2.46 16 26 C -0.15 0.57 7.62 -25.92 -0.20 0.38 16 27 H 0.06 0.03 8.14 -51.93 -0.42 -0.39 16 28 H 0.07 -0.04 8.14 -51.93 -0.42 -0.46 16 29 H 0.09 0.23 5.88 -51.93 -0.31 -0.07 16 30 H 0.07 -0.09 8.14 -51.93 -0.42 -0.51 16 31 H 0.08 -0.20 8.14 -51.93 -0.42 -0.62 16 32 H 0.07 -0.09 8.14 -51.93 -0.42 -0.51 16 33 H 0.09 0.22 5.88 -51.93 -0.31 -0.09 16 34 H 0.07 -0.05 8.14 -51.93 -0.42 -0.47 16 35 H 0.06 0.02 8.14 -51.93 -0.42 -0.40 16 36 H 0.41 -1.49 8.84 -40.82 -0.36 -1.85 16 37 H 0.10 -0.40 8.14 -51.93 -0.42 -0.82 16 38 H 0.09 -0.28 6.86 -51.93 -0.36 -0.64 16 39 H 0.42 -1.65 8.94 -34.47 -0.31 -1.96 16 40 H 0.13 0.22 7.26 -51.93 -0.38 -0.16 16 41 H 0.38 -0.26 8.70 45.56 0.40 0.14 16 42 H -0.25 0.03 6.81 56.52 0.38 0.42 16 43 H -0.25 -0.54 7.11 56.52 0.40 -0.14 16 44 H 0.16 -0.43 5.53 -52.48 -0.29 -0.72 16 45 H 0.18 -0.80 8.06 -52.49 -0.42 -1.22 16 46 H 0.09 -0.36 8.14 -51.93 -0.42 -0.79 16 47 H 0.10 -0.51 8.12 -51.93 -0.42 -0.94 16 LS Contribution 401.56 15.07 6.05 6.05 Total: 0.00 -11.34 401.56 -11.70 -23.04 By element: Atomic # 1 Polarization: -7.05 SS G_CDS: -6.56 Total: -13.61 kcal Atomic # 6 Polarization: 1.08 SS G_CDS: 0.07 Total: 1.16 kcal Atomic # 7 Polarization: 3.30 SS G_CDS: -0.33 Total: 2.96 kcal Atomic # 8 Polarization: -13.20 SS G_CDS: -3.08 Total: -16.28 kcal Atomic # 14 Polarization: -0.61 SS G_CDS: -5.18 Total: -5.79 kcal Atomic # 16 Polarization: 5.13 SS G_CDS: -2.67 Total: 2.46 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -11.34 -11.70 -23.04 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_9456408_13652106.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.914 kcal (2) G-P(sol) polarization free energy of solvation -11.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.043 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds