Wall clock time and date at job start Mon Mar 8 2021 14:50:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53003 * 109.47008 * 2 1 4 4 C 1.53001 * 109.46864 * 240.00487 * 2 1 3 5 5 O 1.45198 * 109.47198 * 120.00144 * 2 1 3 6 6 C 1.34635 * 116.99781 * 59.99794 * 5 2 1 7 7 O 1.21512 * 120.00273 * 0.02562 * 6 5 2 8 8 N 1.34773 * 120.00103 * 180.02562 * 6 5 2 9 9 C 1.46497 * 120.00333 * 180.02562 * 8 6 5 10 10 H 1.09004 * 112.84924 * 336.19574 * 9 8 6 11 11 C 1.53784 * 113.69074 * 107.46317 * 9 8 6 12 12 C 1.53785 * 87.07858 * 139.99466 * 11 9 8 13 13 H 1.09004 * 113.69251 * 89.13410 * 12 11 9 14 14 N 1.46508 * 113.61183 * 220.01792 * 12 11 9 15 15 S 1.65595 * 119.99876 * 242.49836 * 14 12 11 16 16 O 1.42105 * 106.40149 * 178.54167 * 15 14 12 17 17 O 1.42098 * 106.40317 * 311.46040 * 15 14 12 18 18 C 1.76204 * 107.21987 * 65.00402 * 15 14 12 19 19 C 1.33384 * 125.20254 * 179.71997 * 18 15 14 20 20 C 1.50698 * 122.54310 * 0.02562 * 19 18 15 21 21 O 1.42903 * 109.46808 * 285.00059 * 20 19 18 22 22 Si 1.86300 * 109.47449 * 165.00079 * 20 19 18 23 23 C 1.38426 * 114.91922 * 179.85421 * 19 18 15 24 24 C 1.33390 * 114.92209 * 0.43083 * 23 19 18 25 25 S 1.75879 * 125.20242 * 0.02562 * 18 15 14 26 26 C 1.53776 * 87.08429 * 334.56620 * 12 11 9 27 27 H 1.09003 * 109.47102 * 300.00221 * 1 2 3 28 28 H 1.09005 * 109.46808 * 59.99613 * 1 2 3 29 29 H 1.08994 * 109.47283 * 179.97438 * 1 2 3 30 30 H 1.09007 * 109.46872 * 179.97438 * 3 2 1 31 31 H 1.09000 * 109.47377 * 300.00224 * 3 2 1 32 32 H 1.09001 * 109.46706 * 60.00589 * 3 2 1 33 33 H 1.08999 * 109.46720 * 299.99520 * 4 2 1 34 34 H 1.09000 * 109.47338 * 59.99889 * 4 2 1 35 35 H 1.09007 * 109.46816 * 180.02562 * 4 2 1 36 36 H 0.97007 * 120.00015 * 0.02562 * 8 6 5 37 37 H 1.08999 * 113.61434 * 25.44921 * 11 9 8 38 38 H 1.09004 * 113.61452 * 254.54003 * 11 9 8 39 39 H 0.96997 * 120.00091 * 62.49808 * 14 12 11 40 40 H 1.09006 * 109.47092 * 44.99563 * 20 19 18 41 41 H 0.96699 * 114.00292 * 299.99851 * 21 20 19 42 42 H 1.48503 * 109.99951 * 58.68049 * 22 20 19 43 43 H 1.48503 * 109.99735 * 179.97438 * 22 20 19 44 44 H 1.08006 * 122.54105 * 180.19706 * 23 19 18 45 45 H 1.07998 * 125.20368 * 179.74495 * 24 23 19 46 46 H 1.08993 * 113.61383 * 139.97706 * 26 12 11 47 47 H 1.08996 * 113.61559 * 270.88920 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 8 2.0140 -0.6845 1.1855 6 6 1.6522 -1.9723 1.3382 7 8 0.9516 -2.5097 0.5035 8 7 2.0672 -2.6655 2.4170 9 6 1.6740 -4.0669 2.5829 10 1 0.7600 -4.3167 2.0440 11 6 2.8213 -5.0629 2.3449 12 6 2.2716 -5.8605 3.5394 13 1 1.5211 -6.6013 3.2633 14 7 3.3153 -6.4057 4.4111 15 16 3.4677 -8.0443 4.5953 16 8 4.5752 -8.2494 5.4618 17 8 2.1645 -8.5403 4.8689 18 6 3.9326 -8.7043 3.0290 19 6 4.1565 -9.9942 2.7740 20 6 4.0323 -11.0627 3.8294 21 8 5.1601 -11.0010 4.7047 22 14 3.9698 -12.7367 3.0141 23 6 4.5080 -10.2776 1.4654 24 6 4.5784 -9.2166 0.6600 25 16 4.1798 -7.7619 1.5647 26 6 1.6741 -4.5376 4.0470 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 3.1301 1.4425 0.0005 31 1 1.6767 1.9564 -0.8899 32 1 1.6767 1.9563 0.8901 33 1 1.6767 -1.7488 -1.2493 34 1 1.6766 -0.2073 -2.1393 35 1 3.1300 -0.7216 -1.2491 36 1 2.6262 -2.2364 3.0836 37 1 3.8103 -4.6397 2.5205 38 1 2.7491 -5.5933 1.3954 39 1 3.9171 -5.8069 4.8803 40 1 3.1187 -10.9031 4.4022 41 1 6.0094 -11.1346 4.2620 42 1 5.1956 -12.9533 2.2044 43 1 3.8479 -13.7991 4.0445 44 1 4.7136 -11.2812 1.1234 45 1 4.8405 -9.2463 -0.3873 46 1 0.6758 -4.6439 4.4714 47 1 2.3495 -3.9708 4.6877 There are 67 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 67 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_9456408_13652106.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 14:50:35 Heat of formation + Delta-G solvation = -119.331452 kcal Electronic energy + Delta-G solvation = -32915.726383 eV Core-core repulsion = 28320.352360 eV Total energy + Delta-G solvation = -4595.374022 eV No. of doubly occupied orbitals = 67 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 391.105 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -41.87709 -40.48121 -40.06274 -38.36898 -38.00064 -37.26997 -37.04173 -35.63010 -34.85094 -32.98548 -31.43833 -28.35099 -28.29357 -28.09329 -26.80570 -25.71100 -24.34724 -23.11060 -21.79023 -21.44430 -20.82520 -20.02823 -19.77765 -19.16988 -18.68900 -18.07265 -17.93702 -17.28610 -17.16212 -16.86905 -16.41545 -16.23569 -16.22778 -15.91213 -15.54687 -15.39023 -15.30265 -15.19744 -14.47457 -14.37484 -14.15387 -14.03313 -13.69905 -13.61253 -13.49130 -13.35673 -13.33755 -13.26086 -13.16916 -12.90283 -12.85339 -12.79393 -12.64095 -12.54733 -12.46331 -12.35517 -12.18941 -12.11420 -11.96990 -11.60402 -11.37525 -11.08233 -10.79897 -10.59481 -10.38913 -10.13569 -9.59839 -4.98569 -0.80721 -0.64656 0.24585 0.67914 1.14587 1.18398 1.26746 1.52924 1.76155 1.87398 1.90509 2.51395 3.16137 3.21074 3.34332 3.40304 3.45086 3.54630 3.74667 3.75577 3.81500 3.83811 3.95739 4.00176 4.08249 4.20435 4.30345 4.46521 4.60152 4.62571 4.64207 4.71535 4.72305 4.77859 4.78859 4.87304 4.88751 4.89739 4.90518 5.01823 5.07273 5.09647 5.19438 5.28613 5.33073 5.48772 5.61376 5.92548 6.36199 6.42513 7.36591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.128 3.872 3 C -0.139 4.139 4 C -0.180 4.180 5 O -0.371 6.371 6 C 0.644 3.356 7 O -0.592 6.592 8 N -0.687 5.687 9 C 0.141 3.859 10 H 0.115 0.885 11 C -0.170 4.170 12 C 0.114 3.886 13 H 0.127 0.873 14 N -1.091 6.091 15 S 2.724 3.276 16 O -0.971 6.971 17 O -0.978 6.978 18 C -0.793 4.793 19 C -0.001 4.001 20 C -0.132 4.132 21 O -0.535 6.535 22 Si 0.799 3.201 23 C -0.175 4.175 24 C -0.159 4.159 25 S 0.242 5.758 26 C -0.137 4.137 27 H 0.061 0.939 28 H 0.085 0.915 29 H 0.065 0.935 30 H 0.069 0.931 31 H 0.097 0.903 32 H 0.068 0.932 33 H 0.066 0.934 34 H 0.085 0.915 35 H 0.062 0.938 36 H 0.418 0.582 37 H 0.111 0.889 38 H 0.088 0.912 39 H 0.433 0.567 40 H 0.112 0.888 41 H 0.390 0.610 42 H -0.253 1.253 43 H -0.295 1.295 44 H 0.174 0.826 45 H 0.208 0.792 46 H 0.095 0.905 47 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.986 3.942 -6.225 7.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.092 3.908 3 C -0.196 4.196 4 C -0.237 4.237 5 O -0.285 6.285 6 C 0.397 3.603 7 O -0.483 6.483 8 N -0.346 5.346 9 C 0.036 3.964 10 H 0.133 0.867 11 C -0.211 4.211 12 C 0.006 3.994 13 H 0.144 0.856 14 N -0.854 5.854 15 S 2.811 3.189 16 O -0.961 6.961 17 O -0.968 6.968 18 C -0.996 4.996 19 C -0.019 4.019 20 C -0.240 4.240 21 O -0.343 6.343 22 Si 0.699 3.301 23 C -0.204 4.204 24 C -0.297 4.297 25 S 0.509 5.491 26 C -0.177 4.177 27 H 0.080 0.920 28 H 0.104 0.896 29 H 0.084 0.916 30 H 0.088 0.912 31 H 0.115 0.885 32 H 0.087 0.913 33 H 0.085 0.915 34 H 0.103 0.897 35 H 0.081 0.919 36 H 0.256 0.744 37 H 0.130 0.870 38 H 0.107 0.893 39 H 0.272 0.728 40 H 0.130 0.870 41 H 0.240 0.760 42 H -0.178 1.178 43 H -0.223 1.223 44 H 0.191 0.809 45 H 0.225 0.775 46 H 0.113 0.887 47 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 0.232 4.083 -6.051 7.303 hybrid contribution 1.752 -0.711 0.640 1.996 sum 1.984 3.371 -5.410 6.677 Atomic orbital electron populations 1.22479 0.94078 1.03797 1.03413 1.22321 0.94400 0.92491 0.81602 1.21896 1.02439 0.91085 1.04156 1.22472 1.01618 1.02368 0.97227 1.86312 1.71526 1.23476 1.47205 1.18411 0.78566 0.80650 0.82662 1.90907 1.42187 1.70976 1.44187 1.44665 1.54899 1.12041 1.23027 1.22317 0.98907 0.77327 0.97874 0.86675 1.24228 1.00596 0.97129 0.99157 1.22351 0.89760 0.96435 0.90810 0.85560 1.55234 1.44735 1.24665 1.60734 1.00866 0.72996 0.72540 0.72454 1.93612 1.54619 1.84631 1.63217 1.93580 1.40436 1.79598 1.83196 1.35499 1.28736 1.08384 1.26934 1.19083 0.94036 0.92569 0.96202 1.25761 0.92580 1.10085 0.95599 1.86737 1.17175 1.94200 1.36221 0.93600 0.86700 0.69491 0.80308 1.20457 1.05992 1.02404 0.91527 1.26660 1.01550 0.95691 1.05756 1.84110 1.62816 1.07069 0.95083 1.23775 1.03968 0.94303 0.95688 0.92042 0.89635 0.91558 0.91197 0.88454 0.91277 0.91494 0.89666 0.91940 0.74428 0.87017 0.89335 0.72814 0.87033 0.76015 1.17754 1.22293 0.80906 0.77502 0.88665 0.86446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.30 8.37 71.98 0.60 0.30 16 2 C 0.13 0.15 1.13 -10.79 -0.01 0.14 16 3 C -0.14 0.46 8.85 71.98 0.64 1.10 16 4 C -0.18 -0.22 8.37 71.98 0.60 0.38 16 5 O -0.37 -1.16 9.94 -55.44 -0.55 -1.71 16 6 C 0.64 2.26 8.06 129.79 1.05 3.31 16 7 O -0.59 -5.12 11.48 19.80 0.23 -4.90 16 8 N -0.69 2.43 5.36 -567.60 -3.04 -0.61 16 9 C 0.14 -0.75 4.24 45.52 0.19 -0.56 16 10 H 0.12 -0.28 7.46 -2.38 -0.02 -0.30 16 11 C -0.17 1.22 6.31 31.12 0.20 1.42 16 12 C 0.11 -0.66 3.82 45.52 0.17 -0.48 16 13 H 0.13 -0.67 7.77 -2.38 -0.02 -0.69 16 14 N -1.09 3.66 5.60 -167.18 -0.94 2.72 16 15 S 2.72 15.66 5.04 -56.49 -0.28 15.38 16 16 O -0.97 -12.41 17.41 -125.53 -2.19 -14.60 16 17 O -0.98 -10.98 17.04 -128.00 -2.18 -13.16 16 18 C -0.79 -2.09 6.46 66.72 0.43 -1.66 16 19 C 0.00 0.00 5.13 -20.92 -0.11 -0.11 16 20 C -0.13 -0.57 2.33 71.24 0.17 -0.40 16 21 O -0.53 -4.19 12.27 -147.81 -1.81 -6.00 16 22 Si 0.80 -1.14 30.45 68.60 2.09 0.95 16 23 C -0.17 0.55 8.74 21.22 0.19 0.74 16 24 C -0.16 0.92 11.23 66.72 0.75 1.67 16 25 S 0.24 -0.95 19.80 -56.49 -1.12 -2.07 16 26 C -0.14 1.13 7.62 31.12 0.24 1.37 16 27 H 0.06 0.08 8.14 -2.39 -0.02 0.06 16 28 H 0.08 -0.12 8.14 -2.38 -0.02 -0.14 16 29 H 0.07 0.44 5.88 -2.39 -0.01 0.42 16 30 H 0.07 -0.25 8.14 -2.38 -0.02 -0.27 16 31 H 0.10 -0.61 8.14 -2.39 -0.02 -0.63 16 32 H 0.07 -0.23 8.14 -2.39 -0.02 -0.25 16 33 H 0.07 0.40 5.88 -2.39 -0.01 0.39 16 34 H 0.08 -0.15 8.14 -2.39 -0.02 -0.17 16 35 H 0.06 0.03 8.14 -2.38 -0.02 0.01 16 36 H 0.42 -3.39 8.84 -92.70 -0.82 -4.21 16 37 H 0.11 -1.04 8.14 -2.39 -0.02 -1.06 16 38 H 0.09 -0.61 6.86 -2.39 -0.02 -0.63 16 39 H 0.43 -3.34 8.94 -96.75 -0.87 -4.20 16 40 H 0.11 0.72 7.26 -2.38 -0.02 0.70 16 41 H 0.39 0.08 8.70 -74.06 -0.64 -0.57 16 42 H -0.25 0.41 6.81 99.48 0.68 1.09 16 43 H -0.30 -1.81 7.11 99.48 0.71 -1.10 16 44 H 0.17 -1.29 5.53 -2.91 -0.02 -1.31 16 45 H 0.21 -2.54 8.06 -2.91 -0.02 -2.56 16 46 H 0.09 -0.77 8.14 -2.39 -0.02 -0.79 16 47 H 0.12 -1.38 8.12 -2.39 -0.02 -1.40 16 Total: 0.00 -28.43 401.56 -5.97 -34.41 By element: Atomic # 1 Polarization: -16.33 SS G_CDS: -1.28 Total: -17.60 kcal Atomic # 6 Polarization: 2.10 SS G_CDS: 5.10 Total: 7.21 kcal Atomic # 7 Polarization: 6.09 SS G_CDS: -3.98 Total: 2.11 kcal Atomic # 8 Polarization: -33.87 SS G_CDS: -6.50 Total: -40.37 kcal Atomic # 14 Polarization: -1.14 SS G_CDS: 2.09 Total: 0.95 kcal Atomic # 16 Polarization: 14.71 SS G_CDS: -1.40 Total: 13.31 kcal Total: -28.43 -5.97 -34.41 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_9456408_13652106.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.925 kcal (2) G-P(sol) polarization free energy of solvation -28.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.406 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds