Wall clock time and date at job start Mon Mar 8 2021 14:50:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.46975 * 2 1 4 4 C 1.53003 * 109.46746 * 240.00473 * 2 1 3 5 5 O 1.45194 * 109.47339 * 120.00015 * 2 1 3 6 6 C 1.34638 * 116.99705 * 60.00159 * 5 2 1 7 7 O 1.21512 * 120.00105 * 0.02562 * 6 5 2 8 8 N 1.34781 * 119.99962 * 179.97438 * 6 5 2 9 9 C 1.46499 * 120.00062 * 180.02562 * 8 6 5 10 10 H 1.08998 * 112.84950 * 31.05579 * 9 8 6 11 11 C 1.53781 * 113.61443 * 162.25727 * 9 8 6 12 12 C 1.53783 * 87.08061 * 89.11064 * 11 9 8 13 13 H 1.09004 * 113.61021 * 140.05994 * 12 11 9 14 14 N 1.46499 * 113.61585 * 270.88245 * 12 11 9 15 15 S 1.65604 * 119.99873 * 214.97592 * 14 12 11 16 16 O 1.42096 * 106.40217 * 312.24447 * 15 14 12 17 17 O 1.42099 * 106.40200 * 179.32050 * 15 14 12 18 18 C 1.76202 * 107.21559 * 65.78548 * 15 14 12 19 19 C 1.33394 * 122.53594 * 166.02962 * 18 15 14 20 20 C 1.50696 * 125.20276 * 0.02562 * 19 18 15 21 21 O 1.42898 * 109.47122 * 39.73920 * 20 19 18 22 22 Si 1.86300 * 109.46806 * 159.73816 * 20 19 18 23 23 S 1.75880 * 109.59042 * 180.02562 * 19 18 15 24 24 C 1.75887 * 90.97482 * 359.97438 * 23 19 18 25 25 C 1.33390 * 109.58626 * 359.73176 * 24 23 19 26 26 C 1.53775 * 87.08126 * 25.43373 * 12 11 9 27 27 H 1.09007 * 109.46774 * 299.99739 * 1 2 3 28 28 H 1.08991 * 109.47257 * 59.99442 * 1 2 3 29 29 H 1.09000 * 109.46882 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.47458 * 180.02562 * 3 2 1 31 31 H 1.09005 * 109.47436 * 300.00338 * 3 2 1 32 32 H 1.09007 * 109.47156 * 60.00495 * 3 2 1 33 33 H 1.09000 * 109.47083 * 299.99451 * 4 2 1 34 34 H 1.08991 * 109.47172 * 60.00034 * 4 2 1 35 35 H 1.09001 * 109.46653 * 179.97438 * 4 2 1 36 36 H 0.97002 * 119.99789 * 359.97438 * 8 6 5 37 37 H 1.09003 * 113.61485 * 334.56211 * 11 9 8 38 38 H 1.08999 * 113.69072 * 203.66976 * 11 9 8 39 39 H 0.96998 * 120.00183 * 34.97799 * 14 12 11 40 40 H 1.08997 * 109.47399 * 279.73469 * 20 19 18 41 41 H 0.96699 * 113.99711 * 184.95864 * 21 20 19 42 42 H 1.48507 * 110.00139 * 178.68019 * 22 20 19 43 43 H 1.48495 * 110.00223 * 299.99805 * 22 20 19 44 44 H 1.07992 * 125.20390 * 179.97438 * 24 23 19 45 45 H 1.08004 * 122.53585 * 180.24356 * 25 24 23 46 46 H 1.09002 * 113.61829 * 89.11640 * 26 12 11 47 47 H 1.09004 * 113.61353 * 220.01873 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2494 5 8 2.0141 -0.6844 1.1855 6 6 1.6523 -1.9723 1.3382 7 8 0.9517 -2.5097 0.5034 8 7 2.0682 -2.6658 2.4165 9 6 1.6750 -4.0672 2.5824 10 1 1.5447 -4.5855 1.6324 11 6 2.5464 -4.8364 3.5894 12 6 1.5599 -4.3755 4.6754 13 1 1.3365 -5.1430 5.4164 14 7 1.9108 -3.0873 5.2785 15 16 1.6098 -2.8154 6.8841 16 8 0.2727 -3.2353 7.1184 17 8 2.0716 -1.5005 7.1618 18 6 2.6428 -3.9095 7.8009 19 6 2.8529 -3.7689 9.1107 20 6 2.2567 -2.6880 9.9751 21 8 0.9008 -2.4604 9.5857 22 14 2.3093 -3.2205 11.7596 23 16 3.9322 -5.0381 9.6744 24 6 4.0400 -5.7085 8.0519 25 6 3.2928 -4.9835 7.2179 26 6 0.5058 -4.2672 3.5611 27 1 -0.3633 0.5138 0.8901 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 3.1299 1.4426 -0.0005 31 1 1.6766 1.9564 -0.8900 32 1 1.6767 1.9563 0.8901 33 1 1.6767 -1.7489 -1.2494 34 1 1.6766 -0.2073 -2.1392 35 1 3.1300 -0.7208 -1.2496 36 1 2.6284 -2.2371 3.0823 37 1 3.5481 -4.4227 3.7054 38 1 2.5495 -5.9149 3.4317 39 1 2.3194 -2.3937 4.7374 40 1 2.8290 -1.7684 9.8534 41 1 0.4768 -1.7250 10.0487 42 1 1.7533 -2.1499 12.6257 43 1 1.5326 -4.4733 11.9390 44 1 4.6191 -6.5767 7.7742 45 1 3.2051 -5.2145 6.1666 46 1 -0.0500 -5.1900 3.3945 47 1 -0.1399 -3.3939 3.6542 There are 67 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 67 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_9456408_14772022.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 14:50:41 Heat of formation + Delta-G solvation = -103.892177 kcal Electronic energy + Delta-G solvation = -33791.071781 eV Core-core repulsion = 29196.367255 eV Total energy + Delta-G solvation = -4594.704525 eV No. of doubly occupied orbitals = 67 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 391.105 amu Computer time = 2.62 seconds Orbital eigenvalues (eV) -41.95707 -40.73516 -39.57371 -38.05715 -37.83174 -37.73328 -36.59379 -35.32105 -34.56050 -33.21335 -31.98344 -28.30680 -28.26773 -27.56308 -26.96963 -25.99588 -24.38238 -23.40550 -21.70925 -21.40238 -20.88981 -20.32027 -19.13636 -19.02281 -18.63249 -18.09614 -17.64339 -17.51455 -17.21915 -17.08152 -16.49042 -16.39824 -16.05859 -15.82379 -15.43189 -15.30031 -15.23548 -15.05836 -14.40836 -14.32629 -14.28763 -14.05585 -13.89239 -13.77880 -13.46518 -13.39731 -13.11809 -13.06345 -12.90166 -12.84819 -12.83962 -12.80807 -12.69002 -12.58822 -12.46769 -12.22959 -12.19616 -12.09018 -11.68288 -11.60698 -11.28015 -11.02117 -10.96830 -10.69507 -10.21519 -10.09103 -9.76426 -5.25204 -0.63037 -0.49432 0.29188 0.61221 0.96626 1.12186 1.14475 1.45074 1.79312 1.85596 1.95422 2.77571 2.93815 3.05868 3.16654 3.30847 3.40070 3.59089 3.66404 3.79219 3.79828 3.85408 3.94022 3.99004 4.08370 4.09709 4.21962 4.45421 4.48034 4.53931 4.56428 4.58677 4.64933 4.65327 4.75725 4.80396 4.80737 4.89024 4.95248 4.96101 4.97427 5.06484 5.11464 5.34236 5.38553 5.48872 5.57905 5.74179 6.16904 6.34239 7.39952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.137 3.863 3 C -0.142 4.142 4 C -0.184 4.184 5 O -0.365 6.365 6 C 0.653 3.347 7 O -0.560 6.560 8 N -0.697 5.697 9 C 0.137 3.863 10 H 0.111 0.889 11 C -0.156 4.156 12 C 0.117 3.883 13 H 0.112 0.888 14 N -1.104 6.104 15 S 2.721 3.279 16 O -0.931 6.931 17 O -0.953 6.953 18 C -0.664 4.664 19 C -0.056 4.056 20 C -0.079 4.079 21 O -0.534 6.534 22 Si 0.678 3.322 23 S 0.169 5.831 24 C -0.209 4.209 25 C -0.091 4.091 26 C -0.163 4.163 27 H 0.060 0.940 28 H 0.072 0.928 29 H 0.087 0.913 30 H 0.067 0.933 31 H 0.082 0.918 32 H 0.068 0.932 33 H 0.087 0.913 34 H 0.072 0.928 35 H 0.060 0.940 36 H 0.400 0.600 37 H 0.087 0.913 38 H 0.118 0.882 39 H 0.412 0.588 40 H 0.111 0.889 41 H 0.399 0.601 42 H -0.234 1.234 43 H -0.236 1.236 44 H 0.177 0.823 45 H 0.153 0.847 46 H 0.110 0.890 47 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.768 -1.798 1.237 6.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C 0.100 3.900 3 C -0.200 4.200 4 C -0.241 4.241 5 O -0.279 6.279 6 C 0.407 3.593 7 O -0.448 6.448 8 N -0.358 5.358 9 C 0.033 3.967 10 H 0.129 0.871 11 C -0.195 4.195 12 C 0.009 3.991 13 H 0.129 0.871 14 N -0.864 5.864 15 S 2.806 3.194 16 O -0.921 6.921 17 O -0.944 6.944 18 C -0.762 4.762 19 C -0.176 4.176 20 C -0.190 4.190 21 O -0.344 6.344 22 Si 0.574 3.426 23 S 0.433 5.567 24 C -0.345 4.345 25 C -0.119 4.119 26 C -0.203 4.203 27 H 0.079 0.921 28 H 0.091 0.909 29 H 0.106 0.894 30 H 0.086 0.914 31 H 0.101 0.899 32 H 0.087 0.913 33 H 0.106 0.894 34 H 0.091 0.909 35 H 0.079 0.921 36 H 0.237 0.763 37 H 0.106 0.894 38 H 0.137 0.863 39 H 0.248 0.752 40 H 0.129 0.871 41 H 0.250 0.750 42 H -0.157 1.157 43 H -0.159 1.159 44 H 0.194 0.806 45 H 0.171 0.829 46 H 0.128 0.872 47 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 5.061 -2.630 2.974 6.432 hybrid contribution -0.483 1.061 -1.615 1.991 sum 4.578 -1.569 1.359 5.027 Atomic orbital electron populations 1.22532 0.93791 1.05105 1.02792 1.22138 0.94496 0.91570 0.81767 1.21886 1.02349 0.92323 1.03404 1.22523 1.01600 1.03446 0.96533 1.86308 1.71469 1.23309 1.46857 1.18059 0.78665 0.80693 0.81927 1.90926 1.40535 1.70336 1.43041 1.44520 1.55547 1.12007 1.23702 1.21851 0.95504 0.79506 0.99842 0.87068 1.23841 0.99015 1.02212 0.94459 1.21880 0.96637 0.84531 0.96036 0.87062 1.55707 1.78934 1.23063 1.28717 1.01482 0.73844 0.73055 0.71052 1.93613 1.32236 1.82738 1.83497 1.93573 1.82476 1.34970 1.83335 1.29797 1.22221 1.17909 1.06285 1.23689 0.99729 0.98876 0.95315 1.24674 0.85793 0.99321 1.09171 1.86499 1.23758 1.57483 1.66652 0.95388 0.91569 0.83025 0.72651 1.84205 1.42610 1.19677 1.10234 1.25902 1.06943 1.05781 0.95879 1.19787 0.97216 0.93597 1.01332 1.23952 0.97213 1.04523 0.94633 0.92050 0.90889 0.89384 0.91366 0.89901 0.91324 0.89410 0.90905 0.92107 0.76325 0.89415 0.86341 0.75241 0.87134 0.75028 1.15688 1.15931 0.80562 0.82936 0.87157 0.89727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 33. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -0.31 8.37 37.16 0.31 0.00 16 2 C 0.14 0.21 1.13 -90.62 -0.10 0.11 16 3 C -0.14 0.06 8.85 37.16 0.33 0.39 16 4 C -0.18 -0.24 8.37 37.16 0.31 0.07 16 5 O -0.36 -0.94 9.94 -40.32 -0.40 -1.34 16 6 C 0.65 1.81 8.06 54.06 0.44 2.25 16 7 O -0.56 -2.74 11.58 -19.28 -0.22 -2.97 16 8 N -0.70 0.16 5.00 -57.93 -0.29 -0.12 16 9 C 0.14 -0.21 4.22 -67.12 -0.28 -0.50 16 10 H 0.11 -0.09 7.65 -51.93 -0.40 -0.49 16 11 C -0.16 0.66 7.16 -25.92 -0.19 0.48 16 12 C 0.12 -0.25 2.78 -67.12 -0.19 -0.44 16 13 H 0.11 -0.33 7.06 -51.93 -0.37 -0.69 16 14 N -1.10 0.82 5.45 -4.20 -0.02 0.80 16 15 S 2.72 7.74 4.17 -107.50 -0.45 7.29 16 16 O -0.93 -5.71 16.61 -65.03 -1.08 -6.79 16 17 O -0.95 -4.70 17.15 -61.59 -1.06 -5.76 16 18 C -0.66 -1.19 5.71 -41.21 -0.24 -1.43 16 19 C -0.06 -0.09 5.78 -36.00 -0.21 -0.30 16 20 C -0.08 -0.07 2.35 36.00 0.08 0.02 16 21 O -0.53 -1.30 9.56 -59.35 -0.57 -1.87 16 22 Si 0.68 -0.62 31.25 -169.99 -5.31 -5.93 16 23 S 0.17 -0.14 20.85 -107.50 -2.24 -2.38 16 24 C -0.21 0.31 11.23 29.04 0.33 0.63 16 25 C -0.09 0.06 9.17 -41.21 -0.38 -0.32 16 26 C -0.16 0.20 7.68 -25.92 -0.20 0.00 16 27 H 0.06 0.10 8.14 -51.93 -0.42 -0.32 16 28 H 0.07 0.02 8.14 -51.93 -0.42 -0.40 16 29 H 0.09 0.33 5.88 -51.93 -0.31 0.02 16 30 H 0.07 -0.04 8.14 -51.93 -0.42 -0.46 16 31 H 0.08 -0.14 8.14 -51.93 -0.42 -0.57 16 32 H 0.07 -0.03 8.14 -51.93 -0.42 -0.45 16 33 H 0.09 0.29 5.88 -51.93 -0.31 -0.02 16 34 H 0.07 0.00 8.14 -51.93 -0.42 -0.42 16 35 H 0.06 0.06 8.14 -51.93 -0.42 -0.36 16 36 H 0.40 -0.80 6.43 -40.82 -0.26 -1.06 16 37 H 0.09 -0.43 8.14 -51.93 -0.42 -0.86 16 38 H 0.12 -0.73 8.14 -51.93 -0.42 -1.15 16 39 H 0.41 -0.84 6.20 -34.47 -0.21 -1.05 16 40 H 0.11 -0.10 7.96 -51.93 -0.41 -0.51 16 41 H 0.40 -0.77 8.86 45.56 0.40 -0.36 16 42 H -0.23 -0.05 7.11 56.52 0.40 0.36 16 43 H -0.24 -0.47 7.11 56.52 0.40 -0.07 16 44 H 0.18 -0.74 8.06 -52.49 -0.42 -1.17 16 45 H 0.15 -0.53 5.28 -52.48 -0.28 -0.81 16 46 H 0.11 -0.29 8.14 -51.93 -0.42 -0.72 16 47 H 0.08 0.08 8.14 -51.93 -0.42 -0.35 16 LS Contribution 395.44 15.07 5.96 5.96 Total: 0.00 -12.00 395.44 -12.07 -24.07 By element: Atomic # 1 Polarization: -5.50 SS G_CDS: -6.41 Total: -11.91 kcal Atomic # 6 Polarization: 0.93 SS G_CDS: 0.02 Total: 0.95 kcal Atomic # 7 Polarization: 0.98 SS G_CDS: -0.31 Total: 0.67 kcal Atomic # 8 Polarization: -15.39 SS G_CDS: -3.33 Total: -18.72 kcal Atomic # 14 Polarization: -0.62 SS G_CDS: -5.31 Total: -5.93 kcal Atomic # 16 Polarization: 7.60 SS G_CDS: -2.69 Total: 4.91 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -12.00 -12.07 -24.07 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_9456408_14772022.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.821 kcal (2) G-P(sol) polarization free energy of solvation -11.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.071 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.62 seconds