Wall clock time and date at job start Mon Mar 8 2021 14:50:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.46975 * 2 1 4 4 C 1.53003 * 109.46746 * 240.00473 * 2 1 3 5 5 O 1.45194 * 109.47339 * 120.00015 * 2 1 3 6 6 C 1.34638 * 116.99705 * 60.00159 * 5 2 1 7 7 O 1.21512 * 120.00105 * 0.02562 * 6 5 2 8 8 N 1.34781 * 119.99962 * 179.97438 * 6 5 2 9 9 C 1.46499 * 120.00062 * 180.02562 * 8 6 5 10 10 H 1.08998 * 112.84950 * 31.05579 * 9 8 6 11 11 C 1.53781 * 113.61443 * 162.25727 * 9 8 6 12 12 C 1.53783 * 87.08061 * 89.11064 * 11 9 8 13 13 H 1.09004 * 113.61021 * 140.05994 * 12 11 9 14 14 N 1.46499 * 113.61585 * 270.88245 * 12 11 9 15 15 S 1.65604 * 119.99873 * 214.97592 * 14 12 11 16 16 O 1.42096 * 106.40217 * 312.24447 * 15 14 12 17 17 O 1.42099 * 106.40200 * 179.32050 * 15 14 12 18 18 C 1.76202 * 107.21559 * 65.78548 * 15 14 12 19 19 C 1.33394 * 122.53594 * 166.02962 * 18 15 14 20 20 C 1.50696 * 125.20276 * 0.02562 * 19 18 15 21 21 O 1.42898 * 109.47122 * 39.73920 * 20 19 18 22 22 Si 1.86300 * 109.46806 * 159.73816 * 20 19 18 23 23 S 1.75880 * 109.59042 * 180.02562 * 19 18 15 24 24 C 1.75887 * 90.97482 * 359.97438 * 23 19 18 25 25 C 1.33390 * 109.58626 * 359.73176 * 24 23 19 26 26 C 1.53775 * 87.08126 * 25.43373 * 12 11 9 27 27 H 1.09007 * 109.46774 * 299.99739 * 1 2 3 28 28 H 1.08991 * 109.47257 * 59.99442 * 1 2 3 29 29 H 1.09000 * 109.46882 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.47458 * 180.02562 * 3 2 1 31 31 H 1.09005 * 109.47436 * 300.00338 * 3 2 1 32 32 H 1.09007 * 109.47156 * 60.00495 * 3 2 1 33 33 H 1.09000 * 109.47083 * 299.99451 * 4 2 1 34 34 H 1.08991 * 109.47172 * 60.00034 * 4 2 1 35 35 H 1.09001 * 109.46653 * 179.97438 * 4 2 1 36 36 H 0.97002 * 119.99789 * 359.97438 * 8 6 5 37 37 H 1.09003 * 113.61485 * 334.56211 * 11 9 8 38 38 H 1.08999 * 113.69072 * 203.66976 * 11 9 8 39 39 H 0.96998 * 120.00183 * 34.97799 * 14 12 11 40 40 H 1.08997 * 109.47399 * 279.73469 * 20 19 18 41 41 H 0.96699 * 113.99711 * 184.95864 * 21 20 19 42 42 H 1.48507 * 110.00139 * 178.68019 * 22 20 19 43 43 H 1.48495 * 110.00223 * 299.99805 * 22 20 19 44 44 H 1.07992 * 125.20390 * 179.97438 * 24 23 19 45 45 H 1.08004 * 122.53585 * 180.24356 * 25 24 23 46 46 H 1.09002 * 113.61829 * 89.11640 * 26 12 11 47 47 H 1.09004 * 113.61353 * 220.01873 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2494 5 8 2.0141 -0.6844 1.1855 6 6 1.6523 -1.9723 1.3382 7 8 0.9517 -2.5097 0.5034 8 7 2.0682 -2.6658 2.4165 9 6 1.6750 -4.0672 2.5824 10 1 1.5447 -4.5855 1.6324 11 6 2.5464 -4.8364 3.5894 12 6 1.5599 -4.3755 4.6754 13 1 1.3365 -5.1430 5.4164 14 7 1.9108 -3.0873 5.2785 15 16 1.6098 -2.8154 6.8841 16 8 0.2727 -3.2353 7.1184 17 8 2.0716 -1.5005 7.1618 18 6 2.6428 -3.9095 7.8009 19 6 2.8529 -3.7689 9.1107 20 6 2.2567 -2.6880 9.9751 21 8 0.9008 -2.4604 9.5857 22 14 2.3093 -3.2205 11.7596 23 16 3.9322 -5.0381 9.6744 24 6 4.0400 -5.7085 8.0519 25 6 3.2928 -4.9835 7.2179 26 6 0.5058 -4.2672 3.5611 27 1 -0.3633 0.5138 0.8901 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 3.1299 1.4426 -0.0005 31 1 1.6766 1.9564 -0.8900 32 1 1.6767 1.9563 0.8901 33 1 1.6767 -1.7489 -1.2494 34 1 1.6766 -0.2073 -2.1392 35 1 3.1300 -0.7208 -1.2496 36 1 2.6284 -2.2371 3.0823 37 1 3.5481 -4.4227 3.7054 38 1 2.5495 -5.9149 3.4317 39 1 2.3194 -2.3937 4.7374 40 1 2.8290 -1.7684 9.8534 41 1 0.4768 -1.7250 10.0487 42 1 1.7533 -2.1499 12.6257 43 1 1.5326 -4.4733 11.9390 44 1 4.6191 -6.5767 7.7742 45 1 3.2051 -5.2145 6.1666 46 1 -0.0500 -5.1900 3.3945 47 1 -0.1399 -3.3939 3.6542 There are 67 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 67 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_9456408_14772022.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 14:50:40 Heat of formation + Delta-G solvation = -109.139911 kcal Electronic energy + Delta-G solvation = -33791.299339 eV Core-core repulsion = 29196.367255 eV Total energy + Delta-G solvation = -4594.932084 eV No. of doubly occupied orbitals = 67 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 391.105 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -42.04279 -40.69805 -39.55521 -38.28252 -38.00462 -37.79369 -36.88535 -35.45435 -34.60109 -33.20953 -31.94288 -28.39834 -28.33268 -27.54558 -26.77193 -25.95393 -24.36008 -23.46225 -21.71135 -21.46736 -20.84675 -20.42026 -19.25488 -19.05548 -18.68609 -18.18940 -17.67163 -17.57998 -17.24667 -17.19599 -16.55728 -16.39876 -16.05008 -15.88455 -15.52735 -15.35500 -15.28744 -15.02204 -14.49681 -14.35469 -14.18728 -14.06950 -13.73804 -13.70869 -13.53702 -13.38862 -13.22268 -13.15421 -13.13529 -13.08188 -12.95209 -12.90005 -12.70536 -12.58480 -12.57263 -12.32517 -12.28509 -12.02049 -11.69273 -11.49922 -11.41906 -11.15952 -11.03176 -10.62059 -10.23019 -10.05662 -9.67388 -5.20425 -0.77329 -0.48034 0.34419 0.68399 1.01481 1.07852 1.20523 1.49149 1.67885 1.80364 1.90761 2.64006 2.98947 3.05552 3.33038 3.38874 3.49146 3.54111 3.70767 3.75782 3.81220 3.91134 3.96015 4.03935 4.14927 4.19472 4.31602 4.45757 4.58347 4.59472 4.64296 4.68889 4.73559 4.78958 4.81517 4.84377 4.84767 4.90341 4.93142 5.02819 5.04191 5.12912 5.18071 5.24084 5.28416 5.44365 5.57831 5.82238 6.27522 6.27943 7.26632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.127 3.873 3 C -0.139 4.139 4 C -0.179 4.179 5 O -0.371 6.371 6 C 0.645 3.355 7 O -0.587 6.587 8 N -0.687 5.687 9 C 0.127 3.873 10 H 0.104 0.896 11 C -0.131 4.131 12 C 0.108 3.892 13 H 0.123 0.877 14 N -1.095 6.095 15 S 2.730 3.270 16 O -0.974 6.974 17 O -0.984 6.984 18 C -0.675 4.675 19 C -0.089 4.089 20 C -0.101 4.101 21 O -0.560 6.560 22 Si 0.761 3.239 23 S 0.193 5.807 24 C -0.204 4.204 25 C -0.103 4.103 26 C -0.170 4.170 27 H 0.058 0.942 28 H 0.088 0.912 29 H 0.064 0.936 30 H 0.071 0.929 31 H 0.099 0.901 32 H 0.067 0.933 33 H 0.065 0.935 34 H 0.086 0.914 35 H 0.064 0.936 36 H 0.408 0.592 37 H 0.103 0.897 38 H 0.149 0.851 39 H 0.417 0.583 40 H 0.121 0.879 41 H 0.410 0.590 42 H -0.249 1.249 43 H -0.277 1.277 44 H 0.209 0.791 45 H 0.180 0.820 46 H 0.125 0.875 47 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.763 -2.908 1.111 8.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.091 3.909 3 C -0.196 4.196 4 C -0.236 4.236 5 O -0.286 6.286 6 C 0.398 3.602 7 O -0.477 6.477 8 N -0.349 5.349 9 C 0.023 3.977 10 H 0.122 0.878 11 C -0.171 4.171 12 C 0.001 3.999 13 H 0.141 0.859 14 N -0.858 5.858 15 S 2.818 3.182 16 O -0.964 6.964 17 O -0.975 6.975 18 C -0.777 4.777 19 C -0.209 4.209 20 C -0.210 4.210 21 O -0.373 6.373 22 Si 0.659 3.341 23 S 0.457 5.543 24 C -0.340 4.340 25 C -0.130 4.130 26 C -0.210 4.210 27 H 0.077 0.923 28 H 0.107 0.893 29 H 0.083 0.917 30 H 0.090 0.910 31 H 0.118 0.882 32 H 0.086 0.914 33 H 0.084 0.916 34 H 0.105 0.895 35 H 0.083 0.917 36 H 0.246 0.754 37 H 0.122 0.878 38 H 0.167 0.833 39 H 0.255 0.745 40 H 0.139 0.861 41 H 0.264 0.736 42 H -0.173 1.173 43 H -0.204 1.204 44 H 0.226 0.774 45 H 0.197 0.803 46 H 0.143 0.857 47 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 7.063 -3.698 2.841 8.464 hybrid contribution -1.129 1.357 -1.590 2.376 sum 5.933 -2.341 1.251 6.500 Atomic orbital electron populations 1.22491 0.94222 1.03745 1.03435 1.22369 0.94342 0.92625 0.81597 1.21903 1.02580 0.90914 1.04187 1.22464 1.01734 1.02275 0.97108 1.86312 1.71551 1.23311 1.47413 1.18345 0.78638 0.80800 0.82408 1.90909 1.41778 1.70815 1.44183 1.44597 1.54904 1.12459 1.22905 1.22046 0.96591 0.78970 1.00086 0.87811 1.23852 0.98655 1.03486 0.91063 1.22119 0.97278 0.83984 0.96507 0.85942 1.55405 1.78844 1.24079 1.27447 1.00733 0.73223 0.72559 0.71636 1.93558 1.35068 1.83279 1.84503 1.93517 1.82725 1.37037 1.84185 1.29679 1.22787 1.18767 1.06462 1.24044 1.00934 1.00131 0.95812 1.25105 0.85197 1.00082 1.10584 1.86470 1.24830 1.58332 1.67651 0.94526 0.89878 0.79536 0.70153 1.84081 1.41169 1.18263 1.10811 1.26355 1.06389 1.06179 0.95035 1.20061 0.97160 0.92955 1.02838 1.24050 0.97332 1.04100 0.95567 0.92276 0.89344 0.91671 0.90979 0.88239 0.91421 0.91601 0.89469 0.91743 0.75362 0.87844 0.83328 0.74530 0.86123 0.73644 1.17336 1.20350 0.77424 0.80340 0.85667 0.92504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.83 8.37 71.98 0.60 -0.22 16 2 C 0.13 0.47 1.13 -10.79 -0.01 0.46 16 3 C -0.14 0.15 8.85 71.98 0.64 0.79 16 4 C -0.18 -0.58 8.37 71.98 0.60 0.03 16 5 O -0.37 -2.32 9.94 -55.47 -0.55 -2.87 16 6 C 0.64 4.49 8.06 129.79 1.05 5.53 16 7 O -0.59 -6.92 11.58 19.80 0.23 -6.69 16 8 N -0.69 -0.14 5.00 -567.60 -2.84 -2.98 16 9 C 0.13 -0.39 4.22 45.52 0.19 -0.20 16 10 H 0.10 -0.13 7.65 -2.39 -0.02 -0.15 16 11 C -0.13 1.38 7.16 31.12 0.22 1.60 16 12 C 0.11 -0.53 2.78 45.52 0.13 -0.40 16 13 H 0.12 -0.84 7.06 -2.38 -0.02 -0.85 16 14 N -1.10 1.10 5.45 -167.20 -0.91 0.19 16 15 S 2.73 19.39 4.17 -56.49 -0.24 19.15 16 16 O -0.97 -14.14 16.61 -120.49 -2.00 -16.14 16 17 O -0.98 -11.64 17.15 -123.78 -2.12 -13.76 16 18 C -0.68 -2.57 5.71 21.22 0.12 -2.45 16 19 C -0.09 -0.33 5.78 24.59 0.14 -0.19 16 20 C -0.10 -0.28 2.35 71.23 0.17 -0.11 16 21 O -0.56 -3.88 9.56 -125.92 -1.20 -5.09 16 22 Si 0.76 -0.97 31.25 68.60 2.14 1.18 16 23 S 0.19 -0.50 20.85 -56.49 -1.18 -1.68 16 24 C -0.20 1.05 11.23 66.72 0.75 1.80 16 25 C -0.10 0.29 9.17 21.22 0.19 0.49 16 26 C -0.17 0.30 7.68 31.12 0.24 0.54 16 27 H 0.06 0.27 8.14 -2.38 -0.02 0.25 16 28 H 0.09 0.08 8.14 -2.39 -0.02 0.06 16 29 H 0.06 0.63 5.88 -2.39 -0.01 0.61 16 30 H 0.07 -0.12 8.14 -2.39 -0.02 -0.14 16 31 H 0.10 -0.45 8.14 -2.38 -0.02 -0.47 16 32 H 0.07 -0.05 8.14 -2.38 -0.02 -0.07 16 33 H 0.07 0.54 5.88 -2.39 -0.01 0.52 16 34 H 0.09 -0.01 8.14 -2.39 -0.02 -0.03 16 35 H 0.06 0.14 8.14 -2.39 -0.02 0.12 16 36 H 0.41 -1.49 6.43 -92.71 -0.60 -2.09 16 37 H 0.10 -1.32 8.14 -2.39 -0.02 -1.34 16 38 H 0.15 -2.35 8.14 -2.39 -0.02 -2.37 16 39 H 0.42 -1.46 6.20 -96.75 -0.60 -2.06 16 40 H 0.12 -0.06 7.96 -2.39 -0.02 -0.08 16 41 H 0.41 -0.63 8.86 -74.06 -0.66 -1.28 16 42 H -0.25 -0.20 7.11 99.48 0.71 0.51 16 43 H -0.28 -1.48 7.11 99.48 0.71 -0.77 16 44 H 0.21 -2.51 8.06 -2.91 -0.02 -2.53 16 45 H 0.18 -1.68 5.28 -2.91 -0.02 -1.70 16 46 H 0.13 -0.65 8.14 -2.39 -0.02 -0.67 16 47 H 0.06 0.23 8.14 -2.38 -0.02 0.21 16 Total: 0.00 -30.93 395.44 -4.41 -35.34 By element: Atomic # 1 Polarization: -13.54 SS G_CDS: -0.77 Total: -14.32 kcal Atomic # 6 Polarization: 2.63 SS G_CDS: 5.03 Total: 7.66 kcal Atomic # 7 Polarization: 0.96 SS G_CDS: -3.75 Total: -2.79 kcal Atomic # 8 Polarization: -38.90 SS G_CDS: -5.65 Total: -44.55 kcal Atomic # 14 Polarization: -0.97 SS G_CDS: 2.14 Total: 1.18 kcal Atomic # 16 Polarization: 18.89 SS G_CDS: -1.41 Total: 17.47 kcal Total: -30.93 -4.41 -35.34 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_9456408_14772022.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.804 kcal (2) G-P(sol) polarization free energy of solvation -30.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.336 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds