Wall clock time and date at job start Mon Mar 8 2021 14:50:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52998 * 109.47304 * 2 1 4 4 C 1.53006 * 109.47420 * 240.00177 * 2 1 3 5 5 O 1.45197 * 109.47191 * 119.99940 * 2 1 3 6 6 C 1.34637 * 117.00126 * 60.00351 * 5 2 1 7 7 O 1.21508 * 119.99624 * 359.97438 * 6 5 2 8 8 N 1.34779 * 120.00305 * 180.02562 * 6 5 2 9 9 C 1.46502 * 119.99864 * 179.97438 * 8 6 5 10 10 H 1.08998 * 112.85063 * 336.19260 * 9 8 6 11 11 C 1.53781 * 113.61199 * 107.50282 * 9 8 6 12 12 C 1.53779 * 87.07896 * 139.97869 * 11 9 8 13 13 H 1.08995 * 113.69068 * 89.12820 * 12 11 9 14 14 N 1.46500 * 113.61357 * 220.01845 * 12 11 9 15 15 S 1.65609 * 120.00062 * 242.49780 * 14 12 11 16 16 O 1.42098 * 106.39779 * 311.45951 * 15 14 12 17 17 O 1.42094 * 106.40294 * 178.54200 * 15 14 12 18 18 C 1.76195 * 107.21730 * 64.99996 * 15 14 12 19 19 C 1.33391 * 122.54093 * 89.97662 * 18 15 14 20 20 S 1.75886 * 109.59495 * 180.26522 * 19 18 15 21 21 C 1.75887 * 90.96789 * 359.68563 * 20 19 18 22 22 C 1.50707 * 125.20273 * 180.02562 * 21 20 19 23 23 O 1.42902 * 109.47210 * 245.32373 * 22 21 20 24 24 Si 1.86305 * 109.46748 * 5.32270 * 22 21 20 25 25 C 1.33390 * 109.59565 * 0.31558 * 21 20 19 26 26 C 1.53778 * 113.61015 * 204.99897 * 9 8 6 27 27 H 1.09001 * 109.47198 * 300.00074 * 1 2 3 28 28 H 1.09001 * 109.47240 * 60.00316 * 1 2 3 29 29 H 1.09003 * 109.47206 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47473 * 179.97438 * 3 2 1 31 31 H 1.09003 * 109.47444 * 299.99883 * 3 2 1 32 32 H 1.09001 * 109.47053 * 59.99837 * 3 2 1 33 33 H 1.08998 * 109.46877 * 299.99701 * 4 2 1 34 34 H 1.08993 * 109.46787 * 59.99819 * 4 2 1 35 35 H 1.08999 * 109.47247 * 179.97438 * 4 2 1 36 36 H 0.96996 * 119.99828 * 359.97438 * 8 6 5 37 37 H 1.08995 * 113.61401 * 25.43390 * 11 9 8 38 38 H 1.08999 * 113.61446 * 254.52501 * 11 9 8 39 39 H 0.96996 * 120.00539 * 62.50115 * 14 12 11 40 40 H 1.08002 * 125.19887 * 359.97438 * 19 18 15 41 41 H 1.09000 * 109.47196 * 125.31861 * 22 21 20 42 42 H 0.96703 * 113.99495 * 59.99857 * 23 22 21 43 43 H 1.48500 * 109.99808 * 180.02562 * 24 22 21 44 44 H 1.48502 * 110.00067 * 301.31766 * 24 22 21 45 45 H 1.08001 * 122.54060 * 179.73382 * 25 21 20 46 46 H 1.09003 * 113.61497 * 105.47265 * 26 9 8 47 47 H 1.08999 * 113.69533 * 334.57835 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 8 2.0139 -0.6845 1.1855 6 6 1.6523 -1.9723 1.3383 7 8 0.9509 -2.5094 0.5040 8 7 2.0672 -2.6654 2.4172 9 6 1.6732 -4.0666 2.5836 10 1 0.7588 -4.3160 2.0452 11 6 2.8212 -5.0617 2.3459 12 6 2.2722 -5.8594 3.5405 13 1 1.5223 -6.6007 3.2647 14 7 3.3162 -6.4035 4.4124 15 16 3.4699 -8.0421 4.5971 16 8 2.1671 -8.5389 4.8708 17 8 4.5774 -8.2461 5.4637 18 6 3.9353 -8.7021 3.0311 19 6 5.2092 -8.8386 2.6599 20 16 5.2819 -9.5200 1.0400 21 6 3.5263 -9.5918 0.9593 22 6 2.7308 -10.1040 -0.2138 23 8 1.9775 -9.0315 -0.7833 24 14 3.8913 -10.7972 -1.4958 25 6 3.0066 -9.1177 2.0926 26 6 1.6736 -4.5368 4.0477 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 3.1300 1.4425 0.0005 31 1 1.6767 1.9564 -0.8900 32 1 1.6766 1.9563 0.8900 33 1 1.6768 -1.7489 -1.2493 34 1 1.6767 -0.2074 -2.1392 35 1 3.1300 -0.7208 -1.2495 36 1 2.6268 -2.2365 3.0833 37 1 3.8099 -4.6378 2.5213 38 1 2.7495 -5.5925 1.3965 39 1 3.9175 -5.8042 4.8815 40 1 6.0651 -8.5675 3.2603 41 1 2.0511 -10.8871 0.1223 42 1 2.5192 -8.2976 -1.1044 43 1 3.1192 -11.3051 -2.6582 44 1 4.8439 -9.7477 -1.9390 45 1 1.9418 -9.0620 2.2647 46 1 0.6754 -4.6437 4.4723 47 1 2.3480 -3.9700 4.6896 There are 67 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 67 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_9456408_15065232.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 14:50:47 Heat of formation + Delta-G solvation = -119.824164 kcal Electronic energy + Delta-G solvation = -32804.527806 eV Core-core repulsion = 28209.132418 eV Total energy + Delta-G solvation = -4595.395388 eV No. of doubly occupied orbitals = 67 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 391.105 amu Computer time = 2.31 seconds Orbital eigenvalues (eV) -41.85210 -40.56427 -39.55876 -38.27137 -37.95804 -37.69520 -36.88798 -35.58994 -34.84987 -33.01974 -31.89871 -28.35517 -28.31478 -27.28538 -26.98975 -25.78088 -24.97442 -23.12681 -21.65392 -21.46310 -20.89321 -20.29822 -19.29585 -19.14527 -18.57598 -18.15191 -17.90509 -17.61759 -17.16860 -17.10174 -16.46515 -16.40211 -16.18633 -15.68037 -15.50297 -15.41034 -15.23430 -14.93611 -14.48363 -14.37202 -14.28359 -14.19097 -13.87544 -13.75900 -13.64353 -13.43448 -13.22477 -13.17185 -13.08024 -12.95662 -12.88078 -12.85263 -12.68882 -12.54431 -12.49714 -12.37426 -12.22819 -12.21247 -12.08857 -11.60128 -11.32541 -10.99366 -10.87778 -10.68289 -10.29010 -10.20524 -9.91174 -5.18448 -0.80386 -0.51962 0.26095 0.52619 0.95267 1.08385 1.15740 1.41464 1.78823 1.83372 1.98669 2.67905 3.06593 3.12907 3.20223 3.21381 3.31553 3.54367 3.59251 3.61529 3.75071 3.77277 3.80640 3.94520 3.98136 4.17858 4.37427 4.38741 4.43839 4.44187 4.53700 4.57562 4.60408 4.67824 4.69591 4.75536 4.78335 4.84427 4.84821 4.90488 5.01037 5.02913 5.07508 5.27812 5.33770 5.43825 5.57030 5.74219 6.19149 6.37019 7.38762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.137 3.863 3 C -0.142 4.142 4 C -0.184 4.184 5 O -0.365 6.365 6 C 0.650 3.350 7 O -0.565 6.565 8 N -0.700 5.700 9 C 0.142 3.858 10 H 0.126 0.874 11 C -0.168 4.168 12 C 0.130 3.870 13 H 0.125 0.875 14 N -1.101 6.101 15 S 2.709 3.291 16 O -0.947 6.947 17 O -0.955 6.955 18 C -0.686 4.686 19 C -0.082 4.082 20 S 0.159 5.841 21 C -0.225 4.225 22 C -0.034 4.034 23 O -0.520 6.520 24 Si 0.650 3.350 25 C -0.044 4.044 26 C -0.149 4.149 27 H 0.060 0.940 28 H 0.072 0.928 29 H 0.087 0.913 30 H 0.067 0.933 31 H 0.082 0.918 32 H 0.067 0.933 33 H 0.087 0.913 34 H 0.072 0.928 35 H 0.059 0.941 36 H 0.407 0.593 37 H 0.095 0.905 38 H 0.082 0.918 39 H 0.421 0.579 40 H 0.185 0.815 41 H 0.131 0.869 42 H 0.377 0.623 43 H -0.232 1.232 44 H -0.239 1.239 45 H 0.157 0.843 46 H 0.091 0.909 47 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.358 2.348 -1.138 4.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C 0.101 3.899 3 C -0.199 4.199 4 C -0.241 4.241 5 O -0.280 6.280 6 C 0.404 3.596 7 O -0.454 6.454 8 N -0.359 5.359 9 C 0.037 3.963 10 H 0.144 0.856 11 C -0.209 4.209 12 C 0.022 3.978 13 H 0.143 0.857 14 N -0.859 5.859 15 S 2.795 3.205 16 O -0.937 6.937 17 O -0.945 6.945 18 C -0.786 4.786 19 C -0.221 4.221 20 S 0.423 5.577 21 C -0.343 4.343 22 C -0.147 4.147 23 O -0.327 6.327 24 Si 0.548 3.452 25 C -0.073 4.073 26 C -0.189 4.189 27 H 0.079 0.921 28 H 0.091 0.909 29 H 0.106 0.894 30 H 0.086 0.914 31 H 0.101 0.899 32 H 0.086 0.914 33 H 0.106 0.894 34 H 0.091 0.909 35 H 0.078 0.922 36 H 0.242 0.758 37 H 0.114 0.886 38 H 0.101 0.899 39 H 0.256 0.744 40 H 0.202 0.798 41 H 0.148 0.852 42 H 0.225 0.775 43 H -0.155 1.155 44 H -0.164 1.164 45 H 0.174 0.826 46 H 0.109 0.891 47 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 3.713 0.811 -2.652 4.635 hybrid contribution -0.525 2.017 0.560 2.158 sum 3.189 2.828 -2.092 4.748 Atomic orbital electron populations 1.22526 0.93801 1.05084 1.02752 1.22115 0.94470 0.91543 0.81821 1.21882 1.02310 0.92374 1.03370 1.22522 1.01554 1.03463 0.96589 1.86307 1.71481 1.23462 1.46753 1.18164 0.78605 0.80569 0.82257 1.90921 1.40868 1.70515 1.43066 1.44674 1.55435 1.12024 1.23750 1.22339 0.99166 0.77760 0.97067 0.85633 1.24090 0.99842 0.97512 0.99429 1.22079 0.89720 0.95670 0.90358 0.85697 1.55496 1.44175 1.25973 1.60243 1.01641 0.73786 0.72222 0.72819 1.93619 1.39024 1.78419 1.82619 1.93619 1.54081 1.84420 1.62373 1.30022 1.00135 1.22125 1.26298 1.25896 0.99630 0.97656 0.98957 1.84480 1.03569 1.58343 1.11352 1.25003 0.96367 1.11064 1.01851 1.24408 1.00651 0.93191 0.96406 1.86660 1.35645 1.30762 1.79599 0.95203 0.80883 0.87340 0.81739 1.19618 1.00632 0.96596 0.90426 1.23788 1.03370 0.95547 0.96212 0.92080 0.90927 0.89395 0.91419 0.89922 0.91370 0.89419 0.90931 0.92173 0.75775 0.88639 0.89925 0.74387 0.79756 0.85178 0.77490 1.15541 1.16355 0.82559 0.89055 0.88364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 28. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.19 8.37 37.15 0.31 0.12 16 2 C 0.14 0.13 1.13 -90.62 -0.10 0.02 16 3 C -0.14 0.14 8.85 37.16 0.33 0.47 16 4 C -0.18 -0.17 8.37 37.16 0.31 0.14 16 5 O -0.37 -0.66 9.94 -40.32 -0.40 -1.06 16 6 C 0.65 1.27 8.06 54.06 0.44 1.70 16 7 O -0.56 -2.42 11.48 -19.28 -0.22 -2.64 16 8 N -0.70 0.91 5.36 -57.93 -0.31 0.60 16 9 C 0.14 -0.32 4.24 -67.12 -0.28 -0.61 16 10 H 0.13 -0.13 7.46 -51.93 -0.39 -0.51 16 11 C -0.17 0.53 7.68 -25.92 -0.20 0.33 16 12 C 0.13 -0.42 4.42 -67.12 -0.30 -0.72 16 13 H 0.13 -0.41 7.77 -51.93 -0.40 -0.81 16 14 N -1.10 3.35 5.79 -4.20 -0.02 3.33 16 15 S 2.71 0.34 5.77 -107.50 -0.62 -0.28 16 16 O -0.95 -3.11 17.15 -57.17 -0.98 -4.09 16 17 O -0.95 -2.74 17.64 -57.17 -1.01 -3.74 16 18 C -0.69 0.34 5.86 -41.21 -0.24 0.10 16 19 C -0.08 0.11 10.70 29.04 0.31 0.42 16 20 S 0.16 -0.25 20.60 -107.50 -2.21 -2.46 16 21 C -0.23 0.17 5.70 -36.00 -0.21 -0.03 16 22 C -0.03 0.04 2.96 36.01 0.11 0.14 16 23 O -0.52 -0.04 12.88 -35.23 -0.45 -0.49 16 24 Si 0.65 -0.99 30.98 -169.99 -5.27 -6.25 16 25 C -0.04 0.01 9.59 -41.21 -0.40 -0.38 16 26 C -0.15 0.57 7.62 -25.92 -0.20 0.38 16 27 H 0.06 0.05 8.14 -51.93 -0.42 -0.38 16 28 H 0.07 -0.02 8.14 -51.93 -0.42 -0.44 16 29 H 0.09 0.27 5.88 -51.93 -0.31 -0.04 16 30 H 0.07 -0.07 8.14 -51.93 -0.42 -0.50 16 31 H 0.08 -0.18 8.14 -51.93 -0.42 -0.61 16 32 H 0.07 -0.07 8.14 -51.93 -0.42 -0.50 16 33 H 0.09 0.26 5.88 -51.93 -0.31 -0.04 16 34 H 0.07 -0.02 8.14 -51.93 -0.42 -0.44 16 35 H 0.06 0.04 8.14 -51.93 -0.42 -0.38 16 36 H 0.41 -1.36 8.84 -40.82 -0.36 -1.73 16 37 H 0.10 -0.35 8.14 -51.93 -0.42 -0.77 16 38 H 0.08 -0.21 8.14 -51.93 -0.42 -0.63 16 39 H 0.42 -2.08 8.94 -34.47 -0.31 -2.39 16 40 H 0.19 -0.59 8.00 -52.49 -0.42 -1.01 16 41 H 0.13 -0.24 7.96 -51.93 -0.41 -0.65 16 42 H 0.38 -1.01 8.70 45.56 0.40 -0.61 16 43 H -0.23 -0.31 7.11 56.52 0.40 0.09 16 44 H -0.24 0.00 7.11 56.52 0.40 0.40 16 45 H 0.16 -0.09 7.96 -52.49 -0.42 -0.51 16 46 H 0.09 -0.34 8.14 -51.93 -0.42 -0.76 16 47 H 0.10 -0.50 8.12 -51.93 -0.42 -0.93 16 LS Contribution 412.30 15.07 6.21 6.21 Total: 0.00 -10.78 412.30 -12.18 -22.96 By element: Atomic # 1 Polarization: -7.38 SS G_CDS: -6.77 Total: -14.15 kcal Atomic # 6 Polarization: 2.20 SS G_CDS: -0.12 Total: 2.09 kcal Atomic # 7 Polarization: 4.26 SS G_CDS: -0.33 Total: 3.93 kcal Atomic # 8 Polarization: -8.97 SS G_CDS: -3.07 Total: -12.03 kcal Atomic # 14 Polarization: -0.99 SS G_CDS: -5.27 Total: -6.25 kcal Atomic # 16 Polarization: 0.09 SS G_CDS: -2.83 Total: -2.75 kcal Total LS contribution 6.21 Total: 6.21 kcal Total: -10.78 -12.18 -22.96 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_9456408_15065232.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.868 kcal (2) G-P(sol) polarization free energy of solvation -10.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.956 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.31 seconds