Wall clock time and date at job start Mon Mar 8 2021 14:50:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52998 * 109.47304 * 2 1 4 4 C 1.53006 * 109.47420 * 240.00177 * 2 1 3 5 5 O 1.45197 * 109.47191 * 119.99940 * 2 1 3 6 6 C 1.34637 * 117.00126 * 60.00351 * 5 2 1 7 7 O 1.21508 * 119.99624 * 359.97438 * 6 5 2 8 8 N 1.34779 * 120.00305 * 180.02562 * 6 5 2 9 9 C 1.46502 * 119.99864 * 179.97438 * 8 6 5 10 10 H 1.08998 * 112.85063 * 336.19260 * 9 8 6 11 11 C 1.53781 * 113.61199 * 107.50282 * 9 8 6 12 12 C 1.53779 * 87.07896 * 139.97869 * 11 9 8 13 13 H 1.08995 * 113.69068 * 89.12820 * 12 11 9 14 14 N 1.46500 * 113.61357 * 220.01845 * 12 11 9 15 15 S 1.65609 * 120.00062 * 242.49780 * 14 12 11 16 16 O 1.42098 * 106.39779 * 311.45951 * 15 14 12 17 17 O 1.42094 * 106.40294 * 178.54200 * 15 14 12 18 18 C 1.76195 * 107.21730 * 64.99996 * 15 14 12 19 19 C 1.33391 * 122.54093 * 89.97662 * 18 15 14 20 20 S 1.75886 * 109.59495 * 180.26522 * 19 18 15 21 21 C 1.75887 * 90.96789 * 359.68563 * 20 19 18 22 22 C 1.50707 * 125.20273 * 180.02562 * 21 20 19 23 23 O 1.42902 * 109.47210 * 245.32373 * 22 21 20 24 24 Si 1.86305 * 109.46748 * 5.32270 * 22 21 20 25 25 C 1.33390 * 109.59565 * 0.31558 * 21 20 19 26 26 C 1.53778 * 113.61015 * 204.99897 * 9 8 6 27 27 H 1.09001 * 109.47198 * 300.00074 * 1 2 3 28 28 H 1.09001 * 109.47240 * 60.00316 * 1 2 3 29 29 H 1.09003 * 109.47206 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47473 * 179.97438 * 3 2 1 31 31 H 1.09003 * 109.47444 * 299.99883 * 3 2 1 32 32 H 1.09001 * 109.47053 * 59.99837 * 3 2 1 33 33 H 1.08998 * 109.46877 * 299.99701 * 4 2 1 34 34 H 1.08993 * 109.46787 * 59.99819 * 4 2 1 35 35 H 1.08999 * 109.47247 * 179.97438 * 4 2 1 36 36 H 0.96996 * 119.99828 * 359.97438 * 8 6 5 37 37 H 1.08995 * 113.61401 * 25.43390 * 11 9 8 38 38 H 1.08999 * 113.61446 * 254.52501 * 11 9 8 39 39 H 0.96996 * 120.00539 * 62.50115 * 14 12 11 40 40 H 1.08002 * 125.19887 * 359.97438 * 19 18 15 41 41 H 1.09000 * 109.47196 * 125.31861 * 22 21 20 42 42 H 0.96703 * 113.99495 * 59.99857 * 23 22 21 43 43 H 1.48500 * 109.99808 * 180.02562 * 24 22 21 44 44 H 1.48502 * 110.00067 * 301.31766 * 24 22 21 45 45 H 1.08001 * 122.54060 * 179.73382 * 25 21 20 46 46 H 1.09003 * 113.61497 * 105.47265 * 26 9 8 47 47 H 1.08999 * 113.69533 * 334.57835 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 8 2.0139 -0.6845 1.1855 6 6 1.6523 -1.9723 1.3383 7 8 0.9509 -2.5094 0.5040 8 7 2.0672 -2.6654 2.4172 9 6 1.6732 -4.0666 2.5836 10 1 0.7588 -4.3160 2.0452 11 6 2.8212 -5.0617 2.3459 12 6 2.2722 -5.8594 3.5405 13 1 1.5223 -6.6007 3.2647 14 7 3.3162 -6.4035 4.4124 15 16 3.4699 -8.0421 4.5971 16 8 2.1671 -8.5389 4.8708 17 8 4.5774 -8.2461 5.4637 18 6 3.9353 -8.7021 3.0311 19 6 5.2092 -8.8386 2.6599 20 16 5.2819 -9.5200 1.0400 21 6 3.5263 -9.5918 0.9593 22 6 2.7308 -10.1040 -0.2138 23 8 1.9775 -9.0315 -0.7833 24 14 3.8913 -10.7972 -1.4958 25 6 3.0066 -9.1177 2.0926 26 6 1.6736 -4.5368 4.0477 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 3.1300 1.4425 0.0005 31 1 1.6767 1.9564 -0.8900 32 1 1.6766 1.9563 0.8900 33 1 1.6768 -1.7489 -1.2493 34 1 1.6767 -0.2074 -2.1392 35 1 3.1300 -0.7208 -1.2495 36 1 2.6268 -2.2365 3.0833 37 1 3.8099 -4.6378 2.5213 38 1 2.7495 -5.5925 1.3965 39 1 3.9175 -5.8042 4.8815 40 1 6.0651 -8.5675 3.2603 41 1 2.0511 -10.8871 0.1223 42 1 2.5192 -8.2976 -1.1044 43 1 3.1192 -11.3051 -2.6582 44 1 4.8439 -9.7477 -1.9390 45 1 1.9418 -9.0620 2.2647 46 1 0.6754 -4.6437 4.4723 47 1 2.3480 -3.9700 4.6896 There are 67 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 67 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_9456408_15065232.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 14:50:45 Heat of formation + Delta-G solvation = -124.888566 kcal Electronic energy + Delta-G solvation = -32804.747415 eV Core-core repulsion = 28209.132418 eV Total energy + Delta-G solvation = -4595.614997 eV No. of doubly occupied orbitals = 67 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 391.105 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -41.90311 -40.43677 -39.49455 -38.38865 -38.01940 -37.65370 -37.01794 -35.62742 -34.83553 -32.92832 -31.83173 -28.39188 -28.32467 -27.20800 -26.74970 -25.69595 -24.91772 -23.11448 -21.55930 -21.41992 -20.86439 -20.25097 -19.23280 -19.18196 -18.57304 -18.06633 -17.86734 -17.60354 -17.19659 -17.14425 -16.39926 -16.34288 -16.15564 -15.63813 -15.53730 -15.41089 -15.19828 -14.88505 -14.45503 -14.32384 -14.22670 -14.10431 -13.85416 -13.65969 -13.47870 -13.36933 -13.33107 -13.22973 -13.18828 -12.95444 -12.93733 -12.88659 -12.65108 -12.53216 -12.47599 -12.34758 -12.18788 -12.12901 -11.96852 -11.55641 -11.41219 -11.11952 -10.81705 -10.51005 -10.20599 -10.14853 -9.81701 -5.09715 -0.78069 -0.44909 0.35238 0.60386 0.99671 1.14756 1.18233 1.47294 1.72814 1.83704 2.06179 2.69344 3.13602 3.20647 3.31924 3.38250 3.48330 3.62112 3.72124 3.76484 3.80308 3.85274 3.92261 3.92453 4.14625 4.27489 4.44847 4.47762 4.57579 4.58728 4.65305 4.67534 4.73200 4.74192 4.77578 4.84416 4.85409 4.91373 4.91934 5.02985 5.05794 5.06950 5.18480 5.24681 5.30508 5.48698 5.58559 6.04215 6.35628 6.39873 7.33677 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.128 3.872 3 C -0.138 4.138 4 C -0.180 4.180 5 O -0.370 6.370 6 C 0.643 3.357 7 O -0.594 6.594 8 N -0.687 5.687 9 C 0.135 3.865 10 H 0.109 0.891 11 C -0.160 4.160 12 C 0.127 3.873 13 H 0.123 0.877 14 N -1.087 6.087 15 S 2.727 3.273 16 O -0.983 6.983 17 O -0.983 6.983 18 C -0.692 4.692 19 C -0.083 4.083 20 S 0.181 5.819 21 C -0.231 4.231 22 C -0.040 4.040 23 O -0.538 6.538 24 Si 0.716 3.284 25 C -0.054 4.054 26 C -0.139 4.139 27 H 0.062 0.938 28 H 0.085 0.915 29 H 0.064 0.936 30 H 0.069 0.931 31 H 0.097 0.903 32 H 0.069 0.931 33 H 0.064 0.936 34 H 0.085 0.915 35 H 0.062 0.938 36 H 0.418 0.582 37 H 0.107 0.893 38 H 0.075 0.925 39 H 0.432 0.568 40 H 0.204 0.796 41 H 0.136 0.864 42 H 0.387 0.613 43 H -0.274 1.274 44 H -0.256 1.256 45 H 0.154 0.846 46 H 0.092 0.908 47 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.527 3.214 -0.786 5.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.092 3.908 3 C -0.195 4.195 4 C -0.237 4.237 5 O -0.284 6.284 6 C 0.396 3.604 7 O -0.485 6.485 8 N -0.346 5.346 9 C 0.030 3.970 10 H 0.127 0.873 11 C -0.201 4.201 12 C 0.019 3.981 13 H 0.141 0.859 14 N -0.848 5.848 15 S 2.815 3.185 16 O -0.972 6.972 17 O -0.973 6.973 18 C -0.792 4.792 19 C -0.222 4.222 20 S 0.444 5.556 21 C -0.349 4.349 22 C -0.152 4.152 23 O -0.346 6.346 24 Si 0.618 3.382 25 C -0.083 4.083 26 C -0.179 4.179 27 H 0.081 0.919 28 H 0.104 0.896 29 H 0.083 0.917 30 H 0.088 0.912 31 H 0.116 0.884 32 H 0.088 0.912 33 H 0.083 0.917 34 H 0.104 0.896 35 H 0.081 0.919 36 H 0.256 0.744 37 H 0.125 0.875 38 H 0.094 0.906 39 H 0.270 0.730 40 H 0.221 0.779 41 H 0.154 0.846 42 H 0.237 0.763 43 H -0.200 1.200 44 H -0.181 1.181 45 H 0.171 0.829 46 H 0.111 0.889 47 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 4.905 1.693 -2.241 5.652 hybrid contribution -0.895 1.764 0.376 2.014 sum 4.010 3.457 -1.864 5.613 Atomic orbital electron populations 1.22481 0.94114 1.03736 1.03478 1.22319 0.94387 0.92546 0.81548 1.21893 1.02463 0.90960 1.04213 1.22473 1.01623 1.02285 0.97349 1.86310 1.71532 1.23417 1.47179 1.18439 0.78581 0.80674 0.82695 1.90909 1.42250 1.71032 1.44296 1.44676 1.54821 1.12129 1.22967 1.22369 0.98996 0.77399 0.98240 0.87321 1.24048 0.99979 0.96937 0.99101 1.22126 0.89629 0.95933 0.90392 0.85908 1.55171 1.44456 1.24839 1.60319 1.00789 0.72483 0.72608 0.72578 1.93574 1.40629 1.79542 1.83495 1.93576 1.54774 1.85209 1.63759 1.29838 1.00521 1.23068 1.25813 1.26199 0.99895 0.96878 0.99241 1.84404 1.02470 1.57770 1.10918 1.25060 0.97108 1.11018 1.01686 1.24574 1.00955 0.93106 0.96583 1.86631 1.36693 1.31475 1.79778 0.94448 0.78997 0.85426 0.79363 1.19682 1.00735 0.97090 0.90814 1.23785 1.03930 0.94835 0.95307 0.91919 0.89608 0.91706 0.91150 0.88446 0.91167 0.91706 0.89634 0.91922 0.74412 0.87507 0.90606 0.72989 0.77945 0.84627 0.76327 1.19982 1.18148 0.82857 0.88899 0.86394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.48 8.37 71.98 0.60 0.12 16 2 C 0.13 0.27 1.13 -10.79 -0.01 0.25 16 3 C -0.14 0.38 8.85 71.98 0.64 1.02 16 4 C -0.18 -0.44 8.37 71.98 0.60 0.17 16 5 O -0.37 -1.49 9.94 -55.46 -0.55 -2.04 16 6 C 0.64 3.06 8.06 129.79 1.05 4.11 16 7 O -0.59 -6.15 11.48 19.82 0.23 -5.93 16 8 N -0.69 1.72 5.36 -567.61 -3.04 -1.32 16 9 C 0.13 -0.57 4.24 45.52 0.19 -0.38 16 10 H 0.11 -0.05 7.46 -2.39 -0.02 -0.07 16 11 C -0.16 1.03 7.68 31.12 0.24 1.27 16 12 C 0.13 -0.84 4.42 45.52 0.20 -0.64 16 13 H 0.12 -0.72 7.77 -2.39 -0.02 -0.74 16 14 N -1.09 7.05 5.79 -167.20 -0.97 6.08 16 15 S 2.73 1.61 5.77 -56.49 -0.33 1.28 16 16 O -0.98 -7.40 17.15 -128.00 -2.20 -9.60 16 17 O -0.98 -5.77 17.64 -128.00 -2.26 -8.03 16 18 C -0.69 0.64 5.86 21.22 0.12 0.76 16 19 C -0.08 0.28 10.70 66.72 0.71 0.99 16 20 S 0.18 -0.68 20.60 -56.49 -1.16 -1.85 16 21 C -0.23 0.34 5.70 24.59 0.14 0.48 16 22 C -0.04 0.07 2.96 71.24 0.21 0.28 16 23 O -0.54 -0.46 12.88 -148.98 -1.92 -2.38 16 24 Si 0.72 -1.95 30.98 68.60 2.13 0.17 16 25 C -0.05 0.00 9.59 21.22 0.20 0.20 16 26 C -0.14 1.14 7.62 31.12 0.24 1.38 16 27 H 0.06 0.12 8.14 -2.39 -0.02 0.10 16 28 H 0.09 -0.05 8.14 -2.39 -0.02 -0.06 16 29 H 0.06 0.51 5.88 -2.39 -0.01 0.49 16 30 H 0.07 -0.22 8.14 -2.39 -0.02 -0.23 16 31 H 0.10 -0.56 8.14 -2.39 -0.02 -0.58 16 32 H 0.07 -0.21 8.14 -2.39 -0.02 -0.23 16 33 H 0.06 0.49 5.88 -2.39 -0.01 0.48 16 34 H 0.08 -0.06 8.14 -2.39 -0.02 -0.08 16 35 H 0.06 0.10 8.14 -2.39 -0.02 0.08 16 36 H 0.42 -3.10 8.84 -92.71 -0.82 -3.92 16 37 H 0.11 -0.91 8.14 -2.39 -0.02 -0.93 16 38 H 0.08 -0.35 8.14 -2.39 -0.02 -0.36 16 39 H 0.43 -4.72 8.94 -96.75 -0.87 -5.59 16 40 H 0.20 -1.54 8.00 -2.91 -0.02 -1.56 16 41 H 0.14 -0.44 7.96 -2.39 -0.02 -0.46 16 42 H 0.39 -1.81 8.70 -74.06 -0.64 -2.46 16 43 H -0.27 -1.13 7.11 99.48 0.71 -0.42 16 44 H -0.26 0.01 7.11 99.48 0.71 0.72 16 45 H 0.15 0.01 7.96 -2.91 -0.02 -0.01 16 46 H 0.09 -0.73 8.14 -2.39 -0.02 -0.75 16 47 H 0.12 -1.42 8.12 -2.39 -0.02 -1.44 16 Total: 0.00 -25.40 412.30 -6.19 -31.59 By element: Atomic # 1 Polarization: -16.75 SS G_CDS: -1.26 Total: -18.01 kcal Atomic # 6 Polarization: 4.89 SS G_CDS: 5.14 Total: 10.03 kcal Atomic # 7 Polarization: 8.77 SS G_CDS: -4.01 Total: 4.76 kcal Atomic # 8 Polarization: -21.28 SS G_CDS: -6.70 Total: -27.97 kcal Atomic # 14 Polarization: -1.95 SS G_CDS: 2.13 Total: 0.17 kcal Atomic # 16 Polarization: 0.92 SS G_CDS: -1.49 Total: -0.57 kcal Total: -25.40 -6.19 -31.59 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_9456408_15065232.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.296 kcal (2) G-P(sol) polarization free energy of solvation -25.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.593 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds