Wall clock time and date at job start Mon Mar 8 2021 14:50:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.33389 * 125.20472 * 2 1 4 4 C 1.50696 * 122.53866 * 0.05593 * 3 2 1 5 5 O 1.42897 * 109.47342 * 315.88473 * 4 3 2 6 6 Si 1.86304 * 109.47324 * 75.88388 * 4 3 2 7 7 C 1.38431 * 114.92045 * 180.02562 * 3 2 1 8 8 S 1.76198 * 122.53814 * 179.73016 * 7 3 2 9 9 O 1.42101 * 106.40022 * 24.75189 * 8 7 3 10 10 O 1.42098 * 106.40217 * 157.66785 * 8 7 3 11 11 N 1.65595 * 107.21610 * 271.21048 * 8 7 3 12 12 C 1.46501 * 120.00340 * 64.06928 * 11 8 7 13 13 H 1.09003 * 112.84890 * 14.43660 * 12 11 8 14 14 C 1.53782 * 113.61712 * 145.62881 * 12 11 8 15 15 C 1.53779 * 87.07912 * 139.98185 * 14 12 11 16 16 H 1.08997 * 113.61448 * 89.20645 * 15 14 12 17 17 N 1.46505 * 113.61444 * 220.01799 * 15 14 12 18 18 C 1.34768 * 120.00178 * 205.00215 * 17 15 14 19 19 O 1.21512 * 119.99838 * 0.02562 * 18 17 15 20 20 O 1.34635 * 120.00209 * 179.97438 * 18 17 15 21 21 C 1.45197 * 117.00161 * 179.97438 * 20 18 17 22 22 C 1.53001 * 109.46898 * 60.00767 * 21 20 18 23 23 C 1.53006 * 109.47224 * 180.02562 * 21 20 18 24 24 C 1.52995 * 109.47759 * 300.00557 * 21 20 18 25 25 C 1.53773 * 87.08165 * 334.56841 * 15 14 12 26 26 C 1.33387 * 114.92015 * 359.97438 * 7 3 2 27 27 C 1.50703 * 125.20136 * 179.97438 * 26 7 3 28 28 S 1.75885 * 125.20109 * 180.02562 * 2 1 3 29 29 H 1.08997 * 109.46592 * 87.29082 * 1 2 3 30 30 H 1.09003 * 109.47135 * 207.29308 * 1 2 3 31 31 H 1.09001 * 109.46929 * 327.29346 * 1 2 3 32 32 H 1.08997 * 109.47097 * 195.87937 * 4 3 2 33 33 H 0.96702 * 113.99796 * 303.26684 * 5 4 3 34 34 H 1.48505 * 109.99678 * 303.14074 * 6 4 3 35 35 H 1.48499 * 110.00215 * 64.45633 * 6 4 3 36 36 H 0.97002 * 119.99748 * 244.06331 * 11 8 7 37 37 H 1.09003 * 113.61574 * 254.53192 * 14 12 11 38 38 H 1.09002 * 113.61367 * 25.43527 * 14 12 11 39 39 H 0.97003 * 119.99497 * 25.00767 * 17 15 14 40 40 H 1.09008 * 109.47607 * 59.99402 * 22 21 20 41 41 H 1.08994 * 109.47530 * 179.97438 * 22 21 20 42 42 H 1.09001 * 109.46898 * 299.99972 * 22 21 20 43 43 H 1.08998 * 109.46575 * 60.00669 * 23 21 20 44 44 H 1.08994 * 109.46909 * 180.02562 * 23 21 20 45 45 H 1.08998 * 109.46891 * 300.00938 * 23 21 20 46 46 H 1.09001 * 109.46766 * 59.99581 * 24 21 20 47 47 H 1.08994 * 109.47442 * 179.97438 * 24 21 20 48 48 H 1.08998 * 109.47271 * 300.00085 * 24 21 20 49 49 H 1.09004 * 113.61714 * 270.87920 * 25 15 14 50 50 H 1.09003 * 113.61206 * 139.98052 * 25 15 14 51 51 H 1.08997 * 109.46604 * 84.21594 * 27 26 7 52 52 H 1.09004 * 109.47086 * 204.21510 * 27 26 7 53 53 H 1.08998 * 109.46958 * 324.21487 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2760 1.0899 0.0000 4 6 1.7052 2.4846 0.0012 5 8 0.6289 2.5597 -0.9357 6 14 1.0749 2.8962 1.7054 7 6 3.6381 0.8428 -0.0006 8 16 4.8357 2.1351 -0.0077 9 8 4.2011 3.2733 0.5589 10 8 6.0339 1.5746 0.5113 11 7 5.1425 2.5104 -1.5911 12 6 4.0786 3.0648 -2.4319 13 1 3.2223 3.4146 -1.8552 14 6 4.5806 4.0837 -3.4687 15 6 3.5897 3.4473 -4.4576 16 1 2.5993 3.9019 -4.4368 17 7 4.1232 3.3078 -5.8149 18 6 3.2829 3.2574 -6.8674 19 8 2.0828 3.3280 -6.6905 20 8 3.7732 3.1297 -8.1148 21 6 2.8098 3.0815 -9.2000 22 6 1.9892 4.3728 -9.2111 23 6 3.5486 2.9348 -10.5318 24 6 1.8764 1.8858 -9.0008 25 6 3.6981 2.1634 -3.6182 26 6 3.9751 -0.4478 -0.0005 27 6 5.3861 -0.9772 -0.0016 28 16 2.5209 -1.4372 -0.0006 29 1 -0.3632 0.0486 -1.0265 30 1 -0.3633 -0.9133 0.4712 31 1 -0.3633 0.8647 0.5553 32 1 2.4822 3.1954 -0.2802 33 1 0.8737 2.3087 -1.8369 34 1 0.0693 1.8900 2.1316 35 1 2.2031 2.9270 2.6705 36 1 6.0267 2.3632 -1.9619 37 1 4.3425 5.1170 -3.2161 38 1 5.6252 3.9448 -3.7470 39 1 5.0813 3.2517 -5.9560 40 1 2.6542 5.2248 -9.3530 41 1 1.2663 4.3370 -10.0260 42 1 1.4628 4.4769 -8.2623 43 1 4.1329 2.0147 -10.5236 44 1 2.8254 2.8992 -11.3464 45 1 4.2139 3.7865 -10.6739 46 1 1.3500 1.9899 -8.0520 47 1 1.1529 1.8499 -9.8153 48 1 2.4609 0.9659 -8.9929 49 1 4.5014 1.4994 -3.9374 50 1 2.7475 1.6464 -3.4864 51 1 5.7635 -1.0075 1.0206 52 1 5.3967 -1.9825 -0.4228 53 1 6.0186 -0.3245 -0.6032 There are 73 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 73 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_9456408_15065288.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 14:50:51 Heat of formation + Delta-G solvation = -123.474361 kcal Electronic energy + Delta-G solvation = -38642.240469 eV Core-core repulsion = 33735.611558 eV Total energy + Delta-G solvation = -4906.628910 eV No. of doubly occupied orbitals = 73 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 419.136 amu Computer time = 1.60 seconds Orbital eigenvalues (eV) -41.87692 -40.62617 -40.23625 -38.69539 -38.00190 -37.15670 -37.12542 -35.61661 -34.84117 -34.17982 -32.95691 -30.95251 -28.35904 -28.30051 -28.07297 -26.76852 -25.99777 -25.68757 -23.31444 -23.11050 -21.57538 -20.98746 -20.75012 -20.13134 -19.26832 -19.03108 -18.66966 -18.18118 -17.99606 -17.35785 -17.15854 -16.90054 -16.43649 -16.35383 -16.16326 -15.58662 -15.43568 -15.36332 -15.18790 -15.09852 -14.91167 -14.45251 -14.36504 -14.28931 -14.22557 -14.00916 -13.72677 -13.56538 -13.48749 -13.46708 -13.38103 -13.34531 -13.17660 -13.00032 -12.90867 -12.85908 -12.84036 -12.71008 -12.62775 -12.46713 -12.20971 -12.15722 -12.03571 -11.96190 -11.78977 -11.51179 -11.37970 -11.08796 -10.90941 -10.56385 -10.12855 -10.09284 -9.57071 -4.97593 -0.89944 -0.53297 0.28013 0.60264 0.70791 1.18570 1.42606 1.65947 1.76335 1.85080 1.93939 2.52421 3.06706 3.18143 3.35438 3.37330 3.45174 3.60075 3.68453 3.74930 3.77193 3.81336 3.85160 3.94457 3.95081 4.05407 4.14517 4.19467 4.42806 4.46571 4.52356 4.58804 4.60456 4.61852 4.62411 4.65877 4.72879 4.77091 4.79295 4.84597 4.87038 4.88120 4.91739 4.99797 5.01818 5.03180 5.08006 5.15507 5.19964 5.27898 5.32961 5.49737 5.61320 5.96074 6.42513 6.63935 7.36740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C -0.178 4.178 3 C -0.092 4.092 4 C -0.080 4.080 5 O -0.530 6.530 6 Si 0.788 3.212 7 C -0.697 4.697 8 S 2.711 3.289 9 O -0.970 6.970 10 O -0.974 6.974 11 N -1.084 6.084 12 C 0.120 3.880 13 H 0.123 0.877 14 C -0.138 4.138 15 C 0.138 3.862 16 H 0.116 0.884 17 N -0.687 5.687 18 C 0.643 3.357 19 O -0.591 6.591 20 O -0.371 6.371 21 C 0.129 3.871 22 C -0.181 4.181 23 C -0.139 4.139 24 C -0.180 4.180 25 C -0.161 4.161 26 C -0.051 4.051 27 C -0.115 4.115 28 S 0.168 5.832 29 H 0.097 0.903 30 H 0.071 0.929 31 H 0.080 0.920 32 H 0.106 0.894 33 H 0.375 0.625 34 H -0.270 1.270 35 H -0.290 1.290 36 H 0.433 0.567 37 H 0.097 0.903 38 H 0.117 0.883 39 H 0.418 0.582 40 H 0.061 0.939 41 H 0.084 0.916 42 H 0.066 0.934 43 H 0.069 0.931 44 H 0.096 0.904 45 H 0.069 0.931 46 H 0.066 0.934 47 H 0.084 0.916 48 H 0.061 0.939 49 H 0.104 0.896 50 H 0.079 0.921 51 H 0.097 0.903 52 H 0.100 0.900 53 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.986 -0.958 -6.042 6.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.295 4.295 3 C -0.102 4.102 4 C -0.191 4.191 5 O -0.336 6.336 6 Si 0.690 3.310 7 C -0.797 4.797 8 S 2.800 3.200 9 O -0.960 6.960 10 O -0.964 6.964 11 N -0.846 5.846 12 C 0.012 3.988 13 H 0.140 0.860 14 C -0.178 4.178 15 C 0.033 3.967 16 H 0.134 0.866 17 N -0.346 5.346 18 C 0.396 3.604 19 O -0.482 6.482 20 O -0.285 6.285 21 C 0.092 3.908 22 C -0.238 4.238 23 C -0.196 4.196 24 C -0.237 4.237 25 C -0.202 4.202 26 C -0.172 4.172 27 C -0.173 4.173 28 S 0.435 5.565 29 H 0.115 0.885 30 H 0.089 0.911 31 H 0.098 0.902 32 H 0.124 0.876 33 H 0.224 0.776 34 H -0.197 1.197 35 H -0.217 1.217 36 H 0.271 0.729 37 H 0.115 0.885 38 H 0.135 0.865 39 H 0.255 0.745 40 H 0.080 0.920 41 H 0.103 0.897 42 H 0.085 0.915 43 H 0.088 0.912 44 H 0.115 0.885 45 H 0.088 0.912 46 H 0.085 0.915 47 H 0.103 0.897 48 H 0.080 0.920 49 H 0.122 0.878 50 H 0.097 0.903 51 H 0.115 0.885 52 H 0.119 0.881 53 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 0.870 -2.183 -3.891 4.546 hybrid contribution 1.341 -0.382 -1.197 1.838 sum 2.211 -2.565 -5.089 6.112 Atomic orbital electron populations 1.20564 0.86100 1.03315 1.04555 1.24685 1.01265 0.94992 1.08607 1.18698 0.90446 0.97292 1.03777 1.25497 0.95145 0.92235 1.06225 1.86753 1.34528 1.90736 1.21576 0.92864 0.79336 0.87624 0.71149 1.29515 1.11701 1.13778 1.24657 1.01235 0.72485 0.73125 0.73185 1.93508 1.77024 1.49100 1.76377 1.93581 1.45290 1.79604 1.77887 1.55158 1.20951 1.78566 1.29907 1.22315 0.90361 0.95535 0.90595 0.85975 1.23789 1.01110 1.00215 0.92658 1.22374 0.99504 0.97602 0.77227 0.86606 1.44671 1.09965 1.76380 1.03626 1.18428 0.84633 0.75846 0.81467 1.90909 1.14993 1.56474 1.85834 1.86309 1.41841 1.85872 1.14521 1.22307 0.87802 0.96387 0.84255 1.22480 1.00819 0.96224 1.04259 1.21894 1.01456 1.03494 0.92738 1.22471 1.00070 0.96932 1.04247 1.24066 1.03725 0.97679 0.94712 1.24813 1.01509 0.94933 0.95982 1.21006 0.87252 1.03447 1.05606 1.84388 0.94879 1.08234 1.69037 0.88462 0.91060 0.90185 0.87630 0.77557 1.19684 1.21688 0.72871 0.88467 0.86506 0.74512 0.91969 0.89668 0.91509 0.91238 0.88489 0.91201 0.91538 0.89678 0.92044 0.87779 0.90263 0.88454 0.88091 0.88125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.09 8.93 71.24 0.64 0.55 16 2 C -0.18 -0.52 6.17 24.59 0.15 -0.37 16 3 C -0.09 -0.33 4.16 -20.92 -0.09 -0.41 16 4 C -0.08 -0.22 1.92 71.23 0.14 -0.08 16 5 O -0.53 0.36 10.87 -148.98 -1.62 -1.26 16 6 Si 0.79 4.61 30.75 68.60 2.11 6.72 16 7 C -0.70 -2.07 5.85 21.22 0.12 -1.94 16 8 S 2.71 6.89 5.29 -56.49 -0.30 6.60 16 9 O -0.97 -7.23 13.67 -128.00 -1.75 -8.98 16 10 O -0.97 -6.49 15.14 -128.00 -1.94 -8.43 16 11 N -1.08 6.61 5.79 -167.20 -0.97 5.64 16 12 C 0.12 -0.89 4.41 45.52 0.20 -0.69 16 13 H 0.12 -0.84 5.34 -2.39 -0.01 -0.86 16 14 C -0.14 1.34 7.62 31.12 0.24 1.57 16 15 C 0.14 -0.85 4.24 45.51 0.19 -0.66 16 16 H 0.12 -0.40 7.46 -2.39 -0.02 -0.41 16 17 N -0.69 2.71 5.36 -567.63 -3.04 -0.34 16 18 C 0.64 2.17 8.06 129.79 1.05 3.22 16 19 O -0.59 -5.05 11.48 19.80 0.23 -4.83 16 20 O -0.37 -1.14 9.94 -55.45 -0.55 -1.69 16 21 C 0.13 0.16 1.13 -10.79 -0.01 0.15 16 22 C -0.18 -0.31 8.37 71.98 0.60 0.29 16 23 C -0.14 0.45 8.85 71.98 0.64 1.09 16 24 C -0.18 -0.29 8.37 71.98 0.60 0.31 16 25 C -0.16 1.25 7.67 31.12 0.24 1.48 16 26 C -0.05 -0.07 6.50 24.59 0.16 0.09 16 27 C -0.11 0.22 8.87 71.24 0.63 0.85 16 28 S 0.17 0.16 23.31 -56.49 -1.32 -1.16 16 29 H 0.10 -0.19 8.14 -2.39 -0.02 -0.21 16 30 H 0.07 -0.02 8.14 -2.39 -0.02 -0.04 16 31 H 0.08 0.26 4.67 -2.39 -0.01 0.25 16 32 H 0.11 0.14 2.80 -2.39 -0.01 0.13 16 33 H 0.38 -2.41 9.04 -74.06 -0.67 -3.07 16 34 H -0.27 -2.23 6.14 99.48 0.61 -1.62 16 35 H -0.29 -3.68 7.11 99.48 0.71 -2.97 16 36 H 0.43 -4.65 8.94 -96.75 -0.86 -5.52 16 37 H 0.10 -0.95 8.14 -2.39 -0.02 -0.97 16 38 H 0.12 -1.53 8.12 -2.39 -0.02 -1.55 16 39 H 0.42 -3.53 8.84 -92.71 -0.82 -4.35 16 40 H 0.06 0.07 8.14 -2.38 -0.02 0.05 16 41 H 0.08 -0.11 8.14 -2.39 -0.02 -0.13 16 42 H 0.07 0.44 5.88 -2.39 -0.01 0.42 16 43 H 0.07 -0.24 8.14 -2.39 -0.02 -0.26 16 44 H 0.10 -0.60 8.14 -2.39 -0.02 -0.62 16 45 H 0.07 -0.24 8.14 -2.39 -0.02 -0.26 16 46 H 0.07 0.43 5.88 -2.39 -0.01 0.41 16 47 H 0.08 -0.12 8.14 -2.39 -0.02 -0.14 16 48 H 0.06 0.06 8.14 -2.39 -0.02 0.04 16 49 H 0.10 -0.93 8.14 -2.39 -0.02 -0.95 16 50 H 0.08 -0.53 8.14 -2.39 -0.02 -0.55 16 51 H 0.10 -0.07 8.14 -2.39 -0.02 -0.09 16 52 H 0.10 -0.61 8.14 -2.39 -0.02 -0.63 16 53 H 0.10 -0.34 6.63 -2.39 -0.02 -0.36 16 Total: 0.00 -21.44 433.56 -5.07 -26.50 By element: Atomic # 1 Polarization: -22.80 SS G_CDS: -1.42 Total: -24.22 kcal Atomic # 6 Polarization: -0.05 SS G_CDS: 5.50 Total: 5.44 kcal Atomic # 7 Polarization: 9.31 SS G_CDS: -4.01 Total: 5.30 kcal Atomic # 8 Polarization: -19.56 SS G_CDS: -5.63 Total: -25.19 kcal Atomic # 14 Polarization: 4.61 SS G_CDS: 2.11 Total: 6.72 kcal Atomic # 16 Polarization: 7.05 SS G_CDS: -1.62 Total: 5.44 kcal Total: -21.44 -5.07 -26.50 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_9456408_15065288.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.970 kcal (2) G-P(sol) polarization free energy of solvation -21.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -26.504 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.60 seconds