Wall clock time and date at job start Mon Mar 8 2021 14:50:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.47041 * 2 1 4 4 C 1.53008 * 109.47369 * 239.99895 * 2 1 3 5 5 O 1.45201 * 109.47263 * 119.99905 * 2 1 3 6 6 C 1.34644 * 116.99689 * 60.00276 * 5 2 1 7 7 O 1.21502 * 120.00206 * 359.97438 * 6 5 2 8 8 N 1.34771 * 119.99476 * 180.02562 * 6 5 2 9 9 C 1.46502 * 119.99742 * 179.97438 * 8 6 5 10 10 H 1.09002 * 112.91235 * 23.74554 * 9 8 6 11 11 C 1.53777 * 113.61673 * 154.99768 * 9 8 6 12 12 C 1.53780 * 87.08411 * 139.98246 * 11 9 8 13 13 H 1.08996 * 113.61764 * 89.11529 * 12 11 9 14 14 N 1.46508 * 113.61583 * 219.93959 * 12 11 9 15 15 S 1.65599 * 119.99804 * 215.29005 * 14 12 11 16 16 O 1.42100 * 106.40375 * 178.00802 * 15 14 12 17 17 O 1.42109 * 106.40143 * 310.92417 * 15 14 12 18 18 C 1.76200 * 107.22073 * 64.46376 * 15 14 12 19 19 C 1.38219 * 119.99906 * 63.51991 * 18 15 14 20 20 C 1.50703 * 119.99857 * 359.97438 * 19 18 15 21 21 O 1.42902 * 109.47053 * 75.64677 * 20 19 18 22 22 Si 1.86295 * 109.46900 * 195.65076 * 20 19 18 23 23 C 1.38256 * 119.99918 * 179.78896 * 19 18 15 24 24 C 1.38209 * 119.99877 * 0.43820 * 23 19 18 25 25 C 1.38260 * 120.00014 * 359.81797 * 24 23 19 26 26 C 1.38211 * 120.00337 * 359.97208 * 25 24 23 27 27 C 1.53783 * 87.08087 * 334.56568 * 12 11 9 28 28 H 1.08990 * 109.47202 * 299.99658 * 1 2 3 29 29 H 1.08997 * 109.46595 * 60.00356 * 1 2 3 30 30 H 1.08998 * 109.46841 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.46743 * 179.97438 * 3 2 1 32 32 H 1.08999 * 109.46958 * 300.00073 * 3 2 1 33 33 H 1.08997 * 109.47220 * 60.00228 * 3 2 1 34 34 H 1.08993 * 109.46967 * 299.99990 * 4 2 1 35 35 H 1.08998 * 109.46570 * 60.00139 * 4 2 1 36 36 H 1.08998 * 109.47118 * 179.97438 * 4 2 1 37 37 H 0.97004 * 120.00806 * 359.97438 * 8 6 5 38 38 H 1.08998 * 113.61964 * 254.53012 * 11 9 8 39 39 H 1.09002 * 113.61717 * 25.35097 * 11 9 8 40 40 H 0.96998 * 120.00031 * 35.28840 * 14 12 11 41 41 H 1.09009 * 109.46954 * 315.65001 * 20 19 18 42 42 H 0.96698 * 113.99431 * 65.09670 * 21 20 19 43 43 H 1.48499 * 110.00177 * 58.68056 * 22 20 19 44 44 H 1.48503 * 109.99777 * 180.02562 * 22 20 19 45 45 H 1.07999 * 119.99598 * 180.27751 * 23 19 18 46 46 H 1.08003 * 120.00058 * 179.83104 * 24 23 19 47 47 H 1.08000 * 119.99954 * 179.97438 * 25 24 23 48 48 H 1.08002 * 120.00223 * 180.02562 * 26 25 24 49 49 H 1.08992 * 113.62091 * 270.88518 * 27 12 11 50 50 H 1.09002 * 113.61226 * 139.97660 * 27 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2493 5 8 2.0141 -0.6845 1.1856 6 6 1.6523 -1.9724 1.3383 7 8 0.9510 -2.5095 0.5040 8 7 2.0673 -2.6654 2.4171 9 6 1.6733 -4.0666 2.5836 10 1 1.4198 -4.5510 1.6406 11 6 2.6461 -4.8810 3.4525 12 6 1.4084 -5.5537 4.0693 13 1 1.0825 -6.4445 3.5325 14 7 1.5159 -5.7678 5.5147 15 16 0.8480 -7.1174 6.2036 16 8 1.1594 -7.0568 7.5888 17 8 -0.4814 -7.2044 5.7090 18 6 1.7105 -8.5127 5.5603 19 6 3.0585 -8.6723 5.8208 20 6 3.7906 -7.6526 6.6547 21 8 3.4511 -7.8305 8.0313 22 14 5.6273 -7.8734 6.4344 23 6 3.7343 -9.7694 5.3197 24 6 3.0640 -10.7018 4.5506 25 6 1.7168 -10.5394 4.2856 26 6 1.0402 -9.4449 4.7902 27 6 0.6268 -4.2850 3.6892 28 1 -0.3633 0.5137 0.8899 29 1 -0.3632 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 3.1300 1.4424 0.0005 32 1 1.6766 1.9563 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 1.6768 -1.7489 -1.2492 35 1 1.6768 -0.2074 -2.1392 36 1 3.1301 -0.7209 -1.2495 37 1 2.6269 -2.2365 3.0834 38 1 3.2750 -5.5639 2.8812 39 1 3.2129 -4.2747 4.1591 40 1 1.9783 -5.1190 6.0680 41 1 3.5045 -6.6500 6.3366 42 1 3.7473 -8.6723 8.4037 43 1 5.9889 -7.7223 5.0021 44 1 6.3607 -6.8740 7.2521 45 1 4.7866 -9.8963 5.5271 46 1 3.5925 -11.5574 4.1568 47 1 1.1931 -11.2678 3.6842 48 1 -0.0123 -9.3183 4.5834 49 1 0.6404 -3.5159 4.4613 50 1 -0.3746 -4.4867 3.3088 There are 69 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 69 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_9456408_2726874.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 14:50:58 Heat of formation + Delta-G solvation = -118.066983 kcal Electronic energy + Delta-G solvation = -34826.442522 eV Core-core repulsion = 30141.971085 eV Total energy + Delta-G solvation = -4684.471437 eV No. of doubly occupied orbitals = 69 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 385.148 amu Computer time = 2.80 seconds Orbital eigenvalues (eV) -41.83586 -40.79289 -40.52367 -38.30084 -37.96691 -37.40950 -36.69839 -35.58123 -34.84237 -33.12852 -32.77521 -32.48957 -28.33577 -28.29285 -27.07832 -26.95503 -25.75381 -24.50027 -23.11356 -22.85931 -21.64829 -20.93328 -20.54944 -19.31488 -19.12713 -18.34631 -18.07047 -18.04356 -17.28206 -17.08901 -16.96643 -16.70666 -16.32527 -16.00199 -15.86842 -15.70224 -15.47024 -15.33132 -15.15743 -15.06352 -14.46569 -14.33390 -14.29799 -13.98786 -13.74639 -13.59370 -13.53018 -13.39929 -13.19298 -12.96007 -12.90704 -12.85885 -12.83275 -12.75729 -12.69211 -12.52709 -12.30347 -12.23395 -12.20793 -12.18917 -12.03409 -11.61531 -11.30521 -10.97475 -10.66858 -10.56188 -10.52625 -10.18240 -10.15649 -5.21189 -0.64752 -0.31728 0.02695 1.04798 1.16421 1.48091 1.79784 1.85292 1.89624 2.31258 2.74616 3.07308 3.19491 3.22227 3.29098 3.38848 3.44876 3.57059 3.63266 3.73665 3.76861 3.77104 3.82706 3.94606 3.96559 4.04956 4.14877 4.25742 4.40700 4.42611 4.46088 4.46311 4.55713 4.62459 4.63066 4.66604 4.70635 4.77556 4.86229 4.89209 4.90191 4.92696 5.00521 5.04701 5.09323 5.16071 5.29549 5.36040 5.45810 5.58651 5.61145 5.76841 6.38476 6.54248 7.40406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.137 3.863 3 C -0.142 4.142 4 C -0.184 4.184 5 O -0.365 6.365 6 C 0.651 3.349 7 O -0.565 6.565 8 N -0.701 5.701 9 C 0.142 3.858 10 H 0.126 0.874 11 C -0.156 4.156 12 C 0.133 3.867 13 H 0.119 0.881 14 N -1.106 6.106 15 S 2.682 3.318 16 O -0.920 6.920 17 O -0.957 6.957 18 C -0.657 4.657 19 C -0.016 4.016 20 C -0.106 4.106 21 O -0.500 6.500 22 Si 0.691 3.309 23 C -0.137 4.137 24 C -0.057 4.057 25 C -0.134 4.134 26 C -0.022 4.022 27 C -0.163 4.163 28 H 0.060 0.940 29 H 0.072 0.928 30 H 0.087 0.913 31 H 0.067 0.933 32 H 0.082 0.918 33 H 0.067 0.933 34 H 0.087 0.913 35 H 0.072 0.928 36 H 0.059 0.941 37 H 0.407 0.593 38 H 0.087 0.913 39 H 0.097 0.903 40 H 0.420 0.580 41 H 0.113 0.887 42 H 0.374 0.626 43 H -0.252 1.252 44 H -0.247 1.247 45 H 0.137 0.863 46 H 0.137 0.863 47 H 0.136 0.864 48 H 0.146 0.854 49 H 0.096 0.904 50 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.476 -2.247 -1.879 6.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C 0.100 3.900 3 C -0.199 4.199 4 C -0.241 4.241 5 O -0.280 6.280 6 C 0.404 3.596 7 O -0.453 6.453 8 N -0.359 5.359 9 C 0.037 3.963 10 H 0.143 0.857 11 C -0.196 4.196 12 C 0.024 3.976 13 H 0.137 0.863 14 N -0.864 5.864 15 S 2.771 3.229 16 O -0.910 6.910 17 O -0.947 6.947 18 C -0.743 4.743 19 C -0.017 4.017 20 C -0.217 4.217 21 O -0.304 6.304 22 Si 0.591 3.409 23 C -0.155 4.155 24 C -0.075 4.075 25 C -0.153 4.153 26 C -0.042 4.042 27 C -0.204 4.204 28 H 0.079 0.921 29 H 0.091 0.909 30 H 0.106 0.894 31 H 0.086 0.914 32 H 0.101 0.899 33 H 0.086 0.914 34 H 0.106 0.894 35 H 0.091 0.909 36 H 0.078 0.922 37 H 0.242 0.758 38 H 0.105 0.895 39 H 0.116 0.884 40 H 0.255 0.745 41 H 0.130 0.870 42 H 0.221 0.779 43 H -0.177 1.177 44 H -0.171 1.171 45 H 0.154 0.846 46 H 0.154 0.846 47 H 0.154 0.846 48 H 0.164 0.836 49 H 0.115 0.885 50 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 4.830 -1.628 -2.211 5.556 hybrid contribution 0.446 0.285 -0.199 0.566 sum 5.277 -1.343 -2.410 5.955 Atomic orbital electron populations 1.22523 0.93792 1.05098 1.02738 1.22124 0.94483 0.91545 0.81825 1.21881 1.02305 0.92375 1.03363 1.22524 1.01571 1.03459 0.96572 1.86310 1.71478 1.23447 1.46770 1.18151 0.78665 0.80661 0.82082 1.90917 1.40760 1.70392 1.43277 1.44665 1.55560 1.11975 1.23699 1.22336 0.95495 0.79277 0.99198 0.85656 1.23870 0.97288 0.99265 0.99156 1.21991 0.97141 0.98843 0.79583 0.86271 1.55712 1.75095 1.39779 1.15851 1.02481 0.73627 0.72983 0.73843 1.93743 1.84013 1.85385 1.27859 1.93607 1.33252 1.86259 1.81559 1.30846 1.06178 1.21849 1.15403 1.20025 0.92322 0.95519 0.93876 1.25439 1.11725 0.99200 0.85338 1.86872 1.81952 1.42103 1.19497 0.94569 0.74242 0.89920 0.82180 1.21109 0.99748 0.94869 0.99759 1.21501 0.94534 0.97600 0.93895 1.21411 0.94847 0.98297 1.00747 1.21107 1.00278 0.91848 0.90936 1.24040 1.00092 0.97666 0.98625 0.92099 0.90920 0.89382 0.91420 0.89908 0.91389 0.89418 0.90911 0.92150 0.75789 0.89474 0.88434 0.74451 0.86952 0.77924 1.17659 1.17088 0.84573 0.84561 0.84567 0.83639 0.88520 0.89403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.26 8.37 37.16 0.31 0.05 16 2 C 0.14 0.18 1.13 -90.61 -0.10 0.08 16 3 C -0.14 0.09 8.85 37.16 0.33 0.42 16 4 C -0.18 -0.23 8.37 37.16 0.31 0.08 16 5 O -0.37 -0.84 9.94 -40.34 -0.40 -1.24 16 6 C 0.65 1.63 8.06 54.05 0.44 2.07 16 7 O -0.56 -2.70 11.48 -19.27 -0.22 -2.92 16 8 N -0.70 0.45 5.36 -57.93 -0.31 0.14 16 9 C 0.14 -0.23 4.24 -67.12 -0.28 -0.51 16 10 H 0.13 -0.08 7.47 -51.93 -0.39 -0.46 16 11 C -0.16 0.55 7.62 -25.92 -0.20 0.35 16 12 C 0.13 -0.30 4.35 -67.11 -0.29 -0.60 16 13 H 0.12 -0.35 8.05 -51.93 -0.42 -0.77 16 14 N -1.11 1.67 4.49 -4.19 -0.02 1.65 16 15 S 2.68 4.68 4.93 -107.50 -0.53 4.15 16 16 O -0.92 -4.33 15.03 -66.41 -1.00 -5.33 16 17 O -0.96 -4.29 16.74 -57.17 -0.96 -5.24 16 18 C -0.66 -0.34 5.87 -39.58 -0.23 -0.57 16 19 C -0.02 0.01 5.27 -104.62 -0.55 -0.54 16 20 C -0.11 0.09 1.88 36.01 0.07 0.16 16 21 O -0.50 -0.34 10.59 -57.74 -0.61 -0.95 16 22 Si 0.69 -1.66 29.85 -169.99 -5.07 -6.74 16 23 C -0.14 0.30 8.66 -39.59 -0.34 -0.05 16 24 C -0.06 0.14 10.05 -39.58 -0.40 -0.26 16 25 C -0.13 0.22 10.05 -39.58 -0.40 -0.18 16 26 C -0.02 0.00 9.55 -39.58 -0.38 -0.38 16 27 C -0.16 0.24 7.68 -25.91 -0.20 0.04 16 28 H 0.06 0.07 8.14 -51.93 -0.42 -0.35 16 29 H 0.07 0.01 8.14 -51.93 -0.42 -0.42 16 30 H 0.09 0.31 5.88 -51.93 -0.31 0.00 16 31 H 0.07 -0.05 8.14 -51.93 -0.42 -0.48 16 32 H 0.08 -0.16 8.14 -51.93 -0.42 -0.58 16 33 H 0.07 -0.05 8.14 -51.93 -0.42 -0.47 16 34 H 0.09 0.29 5.88 -51.93 -0.31 -0.02 16 35 H 0.07 0.00 8.14 -51.93 -0.42 -0.43 16 36 H 0.06 0.06 8.14 -51.93 -0.42 -0.36 16 37 H 0.41 -1.09 8.84 -40.82 -0.36 -1.45 16 38 H 0.09 -0.34 8.14 -51.93 -0.42 -0.76 16 39 H 0.10 -0.46 8.12 -51.93 -0.42 -0.88 16 40 H 0.42 -1.34 8.62 -34.47 -0.30 -1.63 16 41 H 0.11 -0.16 5.79 -51.92 -0.30 -0.46 16 42 H 0.37 -1.24 8.61 45.56 0.39 -0.85 16 43 H -0.25 0.14 7.11 56.52 0.40 0.54 16 44 H -0.25 -0.16 7.11 56.52 0.40 0.25 16 45 H 0.14 -0.65 5.16 -52.49 -0.27 -0.92 16 46 H 0.14 -0.66 8.06 -52.48 -0.42 -1.09 16 47 H 0.14 -0.49 8.06 -52.49 -0.42 -0.91 16 48 H 0.15 -0.09 7.34 -52.49 -0.39 -0.48 16 49 H 0.10 -0.18 8.14 -51.93 -0.42 -0.60 16 50 H 0.09 -0.04 8.14 -51.93 -0.42 -0.46 16 LS Contribution 409.89 15.07 6.18 6.18 Total: 0.00 -11.98 409.89 -12.20 -24.17 By element: Atomic # 1 Polarization: -6.71 SS G_CDS: -7.33 Total: -14.04 kcal Atomic # 6 Polarization: 2.09 SS G_CDS: -1.92 Total: 0.17 kcal Atomic # 7 Polarization: 2.12 SS G_CDS: -0.33 Total: 1.79 kcal Atomic # 8 Polarization: -12.50 SS G_CDS: -3.19 Total: -15.68 kcal Atomic # 14 Polarization: -1.66 SS G_CDS: -5.07 Total: -6.74 kcal Atomic # 16 Polarization: 4.68 SS G_CDS: -0.53 Total: 4.15 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -11.98 -12.20 -24.17 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_9456408_2726874.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.892 kcal (2) G-P(sol) polarization free energy of solvation -11.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.175 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.81 seconds