Wall clock time and date at job start Mon Mar 8 2021 14:50:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.47041 * 2 1 4 4 C 1.53008 * 109.47369 * 239.99895 * 2 1 3 5 5 O 1.45201 * 109.47263 * 119.99905 * 2 1 3 6 6 C 1.34644 * 116.99689 * 60.00276 * 5 2 1 7 7 O 1.21502 * 120.00206 * 359.97438 * 6 5 2 8 8 N 1.34771 * 119.99476 * 180.02562 * 6 5 2 9 9 C 1.46502 * 119.99742 * 179.97438 * 8 6 5 10 10 H 1.09002 * 112.91235 * 23.74554 * 9 8 6 11 11 C 1.53777 * 113.61673 * 154.99768 * 9 8 6 12 12 C 1.53780 * 87.08411 * 139.98246 * 11 9 8 13 13 H 1.08996 * 113.61764 * 89.11529 * 12 11 9 14 14 N 1.46508 * 113.61583 * 219.93959 * 12 11 9 15 15 S 1.65599 * 119.99804 * 215.29005 * 14 12 11 16 16 O 1.42100 * 106.40375 * 178.00802 * 15 14 12 17 17 O 1.42109 * 106.40143 * 310.92417 * 15 14 12 18 18 C 1.76200 * 107.22073 * 64.46376 * 15 14 12 19 19 C 1.38219 * 119.99906 * 63.51991 * 18 15 14 20 20 C 1.50703 * 119.99857 * 359.97438 * 19 18 15 21 21 O 1.42902 * 109.47053 * 75.64677 * 20 19 18 22 22 Si 1.86295 * 109.46900 * 195.65076 * 20 19 18 23 23 C 1.38256 * 119.99918 * 179.78896 * 19 18 15 24 24 C 1.38209 * 119.99877 * 0.43820 * 23 19 18 25 25 C 1.38260 * 120.00014 * 359.81797 * 24 23 19 26 26 C 1.38211 * 120.00337 * 359.97208 * 25 24 23 27 27 C 1.53783 * 87.08087 * 334.56568 * 12 11 9 28 28 H 1.08990 * 109.47202 * 299.99658 * 1 2 3 29 29 H 1.08997 * 109.46595 * 60.00356 * 1 2 3 30 30 H 1.08998 * 109.46841 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.46743 * 179.97438 * 3 2 1 32 32 H 1.08999 * 109.46958 * 300.00073 * 3 2 1 33 33 H 1.08997 * 109.47220 * 60.00228 * 3 2 1 34 34 H 1.08993 * 109.46967 * 299.99990 * 4 2 1 35 35 H 1.08998 * 109.46570 * 60.00139 * 4 2 1 36 36 H 1.08998 * 109.47118 * 179.97438 * 4 2 1 37 37 H 0.97004 * 120.00806 * 359.97438 * 8 6 5 38 38 H 1.08998 * 113.61964 * 254.53012 * 11 9 8 39 39 H 1.09002 * 113.61717 * 25.35097 * 11 9 8 40 40 H 0.96998 * 120.00031 * 35.28840 * 14 12 11 41 41 H 1.09009 * 109.46954 * 315.65001 * 20 19 18 42 42 H 0.96698 * 113.99431 * 65.09670 * 21 20 19 43 43 H 1.48499 * 110.00177 * 58.68056 * 22 20 19 44 44 H 1.48503 * 109.99777 * 180.02562 * 22 20 19 45 45 H 1.07999 * 119.99598 * 180.27751 * 23 19 18 46 46 H 1.08003 * 120.00058 * 179.83104 * 24 23 19 47 47 H 1.08000 * 119.99954 * 179.97438 * 25 24 23 48 48 H 1.08002 * 120.00223 * 180.02562 * 26 25 24 49 49 H 1.08992 * 113.62091 * 270.88518 * 27 12 11 50 50 H 1.09002 * 113.61226 * 139.97660 * 27 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2493 5 8 2.0141 -0.6845 1.1856 6 6 1.6523 -1.9724 1.3383 7 8 0.9510 -2.5095 0.5040 8 7 2.0673 -2.6654 2.4171 9 6 1.6733 -4.0666 2.5836 10 1 1.4198 -4.5510 1.6406 11 6 2.6461 -4.8810 3.4525 12 6 1.4084 -5.5537 4.0693 13 1 1.0825 -6.4445 3.5325 14 7 1.5159 -5.7678 5.5147 15 16 0.8480 -7.1174 6.2036 16 8 1.1594 -7.0568 7.5888 17 8 -0.4814 -7.2044 5.7090 18 6 1.7105 -8.5127 5.5603 19 6 3.0585 -8.6723 5.8208 20 6 3.7906 -7.6526 6.6547 21 8 3.4511 -7.8305 8.0313 22 14 5.6273 -7.8734 6.4344 23 6 3.7343 -9.7694 5.3197 24 6 3.0640 -10.7018 4.5506 25 6 1.7168 -10.5394 4.2856 26 6 1.0402 -9.4449 4.7902 27 6 0.6268 -4.2850 3.6892 28 1 -0.3633 0.5137 0.8899 29 1 -0.3632 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 3.1300 1.4424 0.0005 32 1 1.6766 1.9563 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 1.6768 -1.7489 -1.2492 35 1 1.6768 -0.2074 -2.1392 36 1 3.1301 -0.7209 -1.2495 37 1 2.6269 -2.2365 3.0834 38 1 3.2750 -5.5639 2.8812 39 1 3.2129 -4.2747 4.1591 40 1 1.9783 -5.1190 6.0680 41 1 3.5045 -6.6500 6.3366 42 1 3.7473 -8.6723 8.4037 43 1 5.9889 -7.7223 5.0021 44 1 6.3607 -6.8740 7.2521 45 1 4.7866 -9.8963 5.5271 46 1 3.5925 -11.5574 4.1568 47 1 1.1931 -11.2678 3.6842 48 1 -0.0123 -9.3183 4.5834 49 1 0.6404 -3.5159 4.4613 50 1 -0.3746 -4.4867 3.3088 There are 69 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 69 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_9456408_2726874.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 14:50:57 Heat of formation + Delta-G solvation = -122.644413 kcal Electronic energy + Delta-G solvation = -34826.641014 eV Core-core repulsion = 30141.971085 eV Total energy + Delta-G solvation = -4684.669930 eV No. of doubly occupied orbitals = 69 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 385.148 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -41.93983 -40.66918 -40.46253 -38.45967 -38.07216 -37.40977 -36.93709 -35.68023 -34.88809 -33.09802 -32.68172 -32.35819 -28.40211 -28.33739 -26.95726 -26.80966 -25.73924 -24.38710 -23.15543 -22.74200 -21.62041 -20.98100 -20.59245 -19.28511 -19.23224 -18.40650 -18.05423 -18.00422 -17.34329 -17.22286 -16.86195 -16.66436 -16.27136 -16.00425 -15.80924 -15.63510 -15.53745 -15.39801 -15.16406 -14.95155 -14.48734 -14.32967 -14.22098 -13.87303 -13.63418 -13.56734 -13.46209 -13.38019 -13.23274 -13.18922 -13.07799 -12.95168 -12.90232 -12.75925 -12.69336 -12.51983 -12.27816 -12.23644 -12.18216 -12.14854 -12.00420 -11.56325 -11.43064 -11.14735 -10.57846 -10.45094 -10.42136 -10.19737 -10.02503 -5.01776 -0.70400 -0.25366 0.16795 1.11808 1.21352 1.65167 1.69143 1.89524 1.94917 2.42494 2.68492 3.10399 3.27779 3.32750 3.41416 3.45154 3.57598 3.70677 3.72903 3.74704 3.77353 3.85467 3.90958 3.99317 4.08000 4.20778 4.31782 4.38183 4.42956 4.55850 4.57879 4.58526 4.61018 4.64705 4.73079 4.74618 4.82380 4.82707 4.84067 4.84222 4.96098 5.00636 5.04584 5.15245 5.19939 5.23763 5.28188 5.33027 5.42325 5.55190 5.78797 5.91903 6.35268 6.79629 7.29668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.127 3.873 3 C -0.138 4.138 4 C -0.180 4.180 5 O -0.370 6.370 6 C 0.643 3.357 7 O -0.593 6.593 8 N -0.688 5.688 9 C 0.139 3.861 10 H 0.114 0.886 11 C -0.139 4.139 12 C 0.130 3.870 13 H 0.124 0.876 14 N -1.096 6.096 15 S 2.691 3.309 16 O -0.956 6.956 17 O -0.994 6.994 18 C -0.666 4.666 19 C -0.024 4.024 20 C -0.126 4.126 21 O -0.525 6.525 22 Si 0.784 3.216 23 C -0.137 4.137 24 C -0.054 4.054 25 C -0.139 4.139 26 C -0.041 4.041 27 C -0.167 4.167 28 H 0.060 0.940 29 H 0.086 0.914 30 H 0.064 0.936 31 H 0.070 0.930 32 H 0.098 0.902 33 H 0.068 0.932 34 H 0.064 0.936 35 H 0.086 0.914 36 H 0.062 0.938 37 H 0.418 0.582 38 H 0.099 0.901 39 H 0.115 0.885 40 H 0.428 0.572 41 H 0.112 0.888 42 H 0.388 0.612 43 H -0.269 1.269 44 H -0.292 1.292 45 H 0.165 0.835 46 H 0.167 0.833 47 H 0.155 0.845 48 H 0.140 0.860 49 H 0.101 0.899 50 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.529 -2.879 -2.443 8.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.091 3.909 3 C -0.195 4.195 4 C -0.237 4.237 5 O -0.285 6.285 6 C 0.397 3.603 7 O -0.484 6.484 8 N -0.347 5.347 9 C 0.034 3.966 10 H 0.132 0.868 11 C -0.179 4.179 12 C 0.022 3.978 13 H 0.142 0.858 14 N -0.856 5.856 15 S 2.783 3.217 16 O -0.946 6.946 17 O -0.984 6.984 18 C -0.755 4.755 19 C -0.025 4.025 20 C -0.234 4.234 21 O -0.332 6.332 22 Si 0.687 3.313 23 C -0.155 4.155 24 C -0.072 4.072 25 C -0.157 4.157 26 C -0.061 4.061 27 C -0.208 4.208 28 H 0.079 0.921 29 H 0.105 0.895 30 H 0.083 0.917 31 H 0.089 0.911 32 H 0.117 0.883 33 H 0.087 0.913 34 H 0.083 0.917 35 H 0.105 0.895 36 H 0.081 0.919 37 H 0.255 0.745 38 H 0.117 0.883 39 H 0.134 0.866 40 H 0.266 0.734 41 H 0.129 0.871 42 H 0.237 0.763 43 H -0.194 1.194 44 H -0.219 1.219 45 H 0.182 0.818 46 H 0.185 0.815 47 H 0.173 0.827 48 H 0.158 0.842 49 H 0.119 0.881 50 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 6.857 -2.248 -2.735 7.717 hybrid contribution -0.200 0.479 -0.037 0.520 sum 6.658 -1.769 -2.772 7.425 Atomic orbital electron populations 1.22478 0.94144 1.03712 1.03464 1.22348 0.94378 0.92588 0.81566 1.21894 1.02480 0.90917 1.04215 1.22475 1.01666 1.02285 0.97286 1.86314 1.71527 1.23341 1.47275 1.18420 0.78618 0.80792 0.82501 1.90905 1.42082 1.70907 1.44467 1.44671 1.54949 1.12097 1.22991 1.22348 0.96430 0.78955 0.98868 0.86821 1.23819 0.96589 0.98788 0.98666 1.22099 0.97924 0.98784 0.79000 0.85840 1.55410 1.74851 1.39124 1.16261 1.01775 0.73160 0.73637 0.73121 1.93691 1.84455 1.86195 1.30255 1.93554 1.35932 1.87007 1.81921 1.30517 1.06851 1.21444 1.16640 1.20144 0.91875 0.96347 0.94171 1.25820 1.13554 0.99369 0.84703 1.86833 1.82539 1.43385 1.20420 0.93459 0.70622 0.88150 0.79083 1.21469 1.01097 0.93979 0.98972 1.21916 0.94180 0.98160 0.92894 1.21703 0.95567 0.97925 1.00536 1.21218 1.00377 0.92738 0.91727 1.24070 0.99517 0.98364 0.98835 0.92064 0.89475 0.91749 0.91116 0.88330 0.91270 0.91686 0.89504 0.91859 0.74464 0.88265 0.86649 0.73419 0.87087 0.76296 1.19436 1.21914 0.81764 0.81525 0.82739 0.84214 0.88055 0.90923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.66 8.37 71.98 0.60 -0.06 16 2 C 0.13 0.38 1.13 -10.79 -0.01 0.37 16 3 C -0.14 0.27 8.85 71.98 0.64 0.91 16 4 C -0.18 -0.54 8.37 71.98 0.60 0.06 16 5 O -0.37 -1.94 9.94 -55.53 -0.55 -2.49 16 6 C 0.64 3.97 8.06 129.79 1.05 5.01 16 7 O -0.59 -6.85 11.48 19.83 0.23 -6.62 16 8 N -0.69 0.53 5.36 -567.61 -3.04 -2.52 16 9 C 0.14 -0.34 4.24 45.52 0.19 -0.15 16 10 H 0.11 0.03 7.47 -2.39 -0.02 0.02 16 11 C -0.14 1.04 7.62 31.12 0.24 1.28 16 12 C 0.13 -0.50 4.35 45.52 0.20 -0.30 16 13 H 0.12 -0.58 8.05 -2.39 -0.02 -0.60 16 14 N -1.10 2.19 4.49 -167.19 -0.75 1.44 16 15 S 2.69 14.35 4.93 -56.49 -0.28 14.07 16 16 O -0.96 -10.96 15.03 -119.17 -1.79 -12.75 16 17 O -0.99 -11.47 16.74 -128.00 -2.14 -13.62 16 18 C -0.67 -1.20 5.87 22.27 0.13 -1.07 16 19 C -0.02 0.04 5.27 -19.86 -0.10 -0.07 16 20 C -0.13 0.24 1.88 71.24 0.13 0.37 16 21 O -0.53 -0.99 10.59 -127.46 -1.35 -2.34 16 22 Si 0.78 -4.67 29.85 68.60 2.05 -2.63 16 23 C -0.14 0.86 8.66 22.27 0.19 1.05 16 24 C -0.05 0.38 10.05 22.27 0.22 0.60 16 25 C -0.14 0.57 10.05 22.27 0.22 0.80 16 26 C -0.04 -0.02 9.55 22.27 0.21 0.19 16 27 C -0.17 0.28 7.68 31.12 0.24 0.52 16 28 H 0.06 0.20 8.14 -2.39 -0.02 0.18 16 29 H 0.09 0.02 8.14 -2.39 -0.02 0.00 16 30 H 0.06 0.58 5.88 -2.39 -0.01 0.56 16 31 H 0.07 -0.16 8.14 -2.39 -0.02 -0.18 16 32 H 0.10 -0.51 8.14 -2.39 -0.02 -0.53 16 33 H 0.07 -0.14 8.14 -2.39 -0.02 -0.16 16 34 H 0.06 0.53 5.88 -2.39 -0.01 0.51 16 35 H 0.09 -0.03 8.14 -2.39 -0.02 -0.05 16 36 H 0.06 0.14 8.14 -2.39 -0.02 0.12 16 37 H 0.42 -2.33 8.84 -92.71 -0.82 -3.15 16 38 H 0.10 -0.90 8.14 -2.39 -0.02 -0.92 16 39 H 0.12 -1.25 8.12 -2.39 -0.02 -1.27 16 40 H 0.43 -2.41 8.62 -96.75 -0.83 -3.24 16 41 H 0.11 -0.30 5.79 -2.38 -0.01 -0.31 16 42 H 0.39 -2.50 8.61 -74.06 -0.64 -3.13 16 43 H -0.27 0.84 7.11 99.48 0.71 1.54 16 44 H -0.29 -0.43 7.11 99.48 0.71 0.28 16 45 H 0.17 -2.08 5.16 -2.91 -0.02 -2.09 16 46 H 0.17 -2.22 8.06 -2.91 -0.02 -2.24 16 47 H 0.15 -1.31 8.06 -2.91 -0.02 -1.33 16 48 H 0.14 0.10 7.34 -2.91 -0.02 0.08 16 49 H 0.10 -0.28 8.14 -2.39 -0.02 -0.30 16 50 H 0.07 0.11 8.14 -2.39 -0.02 0.09 16 Total: 0.00 -29.91 409.89 -4.13 -34.04 By element: Atomic # 1 Polarization: -14.87 SS G_CDS: -1.25 Total: -16.12 kcal Atomic # 6 Polarization: 4.77 SS G_CDS: 4.76 Total: 9.53 kcal Atomic # 7 Polarization: 2.72 SS G_CDS: -3.79 Total: -1.07 kcal Atomic # 8 Polarization: -32.21 SS G_CDS: -5.61 Total: -37.82 kcal Atomic # 14 Polarization: -4.67 SS G_CDS: 2.05 Total: -2.63 kcal Atomic # 16 Polarization: 14.35 SS G_CDS: -0.28 Total: 14.07 kcal Total: -29.91 -4.13 -34.04 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_9456408_2726874.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.605 kcal (2) G-P(sol) polarization free energy of solvation -29.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.039 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds