Wall clock time and date at job start Mon Mar 8 2021 15:47:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86297 * 1 3 3 C 1.86300 * 109.47047 * 2 1 4 4 C 1.86294 * 109.47301 * 240.00119 * 2 1 3 5 5 C 1.86298 * 109.46803 * 119.99903 * 2 1 3 6 6 C 1.52998 * 109.47203 * 60.00383 * 5 2 1 7 7 N 1.46500 * 109.46901 * 179.97438 * 6 5 2 8 8 S 1.65602 * 119.99756 * 164.99878 * 7 6 5 9 9 O 1.42099 * 106.40368 * 311.45872 * 8 7 6 10 10 O 1.42098 * 106.40092 * 178.54189 * 8 7 6 11 11 C 1.76199 * 107.21888 * 65.00258 * 8 7 6 12 12 C 1.38234 * 119.99788 * 269.72664 * 11 8 7 13 13 C 1.38240 * 120.00062 * 180.32474 * 12 11 8 14 14 C 1.38235 * 119.99708 * 359.94741 * 13 12 11 15 15 C 1.50704 * 119.99518 * 180.02562 * 14 13 12 16 16 O 1.42907 * 109.46673 * 245.02129 * 15 14 13 17 17 Si 1.86301 * 109.47374 * 5.01834 * 15 14 13 18 18 H 1.48502 * 109.46724 * 60.00187 * 17 15 14 19 19 H 1.48497 * 109.47038 * 180.02562 * 17 15 14 20 20 H 1.48497 * 109.47278 * 300.00286 * 17 15 14 21 21 C 1.38234 * 120.00204 * 0.02562 * 14 13 12 22 22 C 1.38230 * 119.99885 * 0.02562 * 21 14 13 23 23 H 1.08992 * 109.47603 * 300.00030 * 1 2 3 24 24 H 1.09000 * 109.47162 * 60.00304 * 1 2 3 25 25 H 1.09002 * 109.47016 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47097 * 179.97438 * 3 2 1 27 27 H 1.08994 * 109.47280 * 300.00069 * 3 2 1 28 28 H 1.09000 * 109.47072 * 59.99837 * 3 2 1 29 29 H 1.09002 * 109.47037 * 299.99928 * 4 2 1 30 30 H 1.09000 * 109.47358 * 59.99697 * 4 2 1 31 31 H 1.08996 * 109.47346 * 180.02562 * 4 2 1 32 32 H 1.09000 * 109.47253 * 300.00124 * 5 2 1 33 33 H 1.09003 * 109.46801 * 180.02562 * 5 2 1 34 34 H 1.09000 * 109.47228 * 59.99726 * 6 5 2 35 35 H 1.08996 * 109.46737 * 299.99602 * 6 5 2 36 36 H 0.97000 * 120.00299 * 344.99678 * 7 6 5 37 37 H 1.08001 * 120.00299 * 0.25146 * 12 11 8 38 38 H 1.07997 * 119.99868 * 179.97438 * 13 12 11 39 39 H 1.08999 * 109.46837 * 125.02482 * 15 14 13 40 40 H 0.96693 * 114.00184 * 59.99851 * 16 15 14 41 41 H 1.07992 * 119.99701 * 179.97438 * 21 14 13 42 42 H 1.08000 * 120.00356 * 179.97438 * 22 21 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4839 1.7565 0.0000 4 6 2.4840 -0.8782 -1.5211 5 6 2.4839 -0.8782 1.5212 6 6 1.9739 -2.3207 1.5211 7 7 2.4627 -3.0114 2.7170 8 16 1.7828 -4.4491 3.1789 9 8 0.3755 -4.2533 3.1554 10 8 2.4892 -4.8735 4.3365 11 6 2.1427 -5.6253 1.9173 12 6 1.2687 -5.7937 0.8597 13 6 1.5477 -6.7213 -0.1266 14 6 2.7012 -7.4797 -0.0557 15 6 3.0056 -8.4905 -1.1313 16 8 2.9830 -9.8046 -0.5700 17 14 1.7247 -8.3686 -2.4786 18 1 1.7482 -7.0031 -3.0617 19 1 2.0244 -9.3651 -3.5380 20 1 0.3803 -8.6408 -1.9096 21 6 3.5755 -7.3110 1.0017 22 6 3.2960 -6.3842 1.9884 23 1 -0.3634 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 3.5739 1.7565 0.0005 27 1 2.1206 2.2703 -0.8899 28 1 2.1206 2.2703 0.8900 29 1 2.1207 -1.9058 -1.5211 30 1 2.1207 -0.3644 -2.4111 31 1 3.5740 -0.8786 -1.5209 32 1 2.1205 -0.3644 2.4111 33 1 3.5739 -0.8778 1.5214 34 1 2.3373 -2.8345 0.6312 35 1 0.8840 -2.3207 1.5211 36 1 3.1846 -2.6267 3.2384 37 1 0.3673 -5.2014 0.8044 38 1 0.8646 -6.8531 -0.9527 39 1 3.9924 -8.2907 -1.5488 40 1 2.1335 -10.0508 -0.1792 41 1 4.4764 -7.9038 1.0572 42 1 3.9788 -6.2526 2.8148 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_9476126_13421422.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 15:47:06 Heat of formation + Delta-G solvation = -129.377926 kcal Electronic energy + Delta-G solvation = -22707.351299 eV Core-core repulsion = 19323.575713 eV Total energy + Delta-G solvation = -3383.775587 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 317.108 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.76075 -38.25209 -37.80775 -36.92384 -36.81417 -33.08143 -32.27600 -30.83032 -29.38736 -28.53002 -28.49821 -27.29817 -24.23925 -23.68316 -23.04482 -20.63517 -19.31612 -18.60912 -18.17184 -17.46767 -16.98506 -16.53937 -16.17284 -16.10383 -15.77438 -15.44087 -15.24461 -14.63840 -14.53738 -14.27209 -14.12544 -14.10577 -13.95229 -13.90265 -13.42570 -13.34760 -13.32698 -13.18092 -13.09815 -13.01932 -12.86364 -12.69832 -12.69002 -12.57097 -12.29954 -11.88472 -11.77916 -10.95546 -10.90513 -10.88743 -10.68260 -10.59837 -10.39762 -10.20814 -0.69664 -0.38480 0.11949 0.95959 1.28819 1.36429 1.55862 1.73284 1.76449 1.76953 1.98945 2.31068 2.52097 2.76271 3.23354 3.26644 3.41531 3.68123 3.72723 3.83235 4.03528 4.07968 4.25738 4.32506 4.40700 4.51608 4.56904 4.62214 4.63607 4.66170 4.67433 4.70143 4.71278 4.74569 4.82219 4.87952 4.91948 5.17028 5.22567 5.38852 5.45307 5.49551 5.62789 5.89122 6.34693 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.455 4.455 2 Si 1.014 2.986 3 C -0.450 4.450 4 C -0.453 4.453 5 C -0.426 4.426 6 C 0.122 3.878 7 N -1.113 6.113 8 S 2.691 3.309 9 O -0.953 6.953 10 O -0.957 6.957 11 C -0.674 4.674 12 C -0.016 4.016 13 C -0.147 4.147 14 C -0.064 4.064 15 C -0.090 4.090 16 O -0.534 6.534 17 Si 0.948 3.052 18 H -0.247 1.247 19 H -0.250 1.250 20 H -0.249 1.249 21 C -0.111 4.111 22 C -0.017 4.017 23 H 0.071 0.929 24 H 0.070 0.930 25 H 0.070 0.930 26 H 0.069 0.931 27 H 0.070 0.930 28 H 0.069 0.931 29 H 0.069 0.931 30 H 0.070 0.930 31 H 0.069 0.931 32 H 0.088 0.912 33 H 0.085 0.915 34 H 0.067 0.933 35 H 0.083 0.917 36 H 0.420 0.580 37 H 0.145 0.855 38 H 0.131 0.869 39 H 0.124 0.876 40 H 0.379 0.621 41 H 0.139 0.861 42 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.419 2.361 -4.240 5.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.562 4.562 2 Si 1.210 2.790 3 C -0.558 4.558 4 C -0.560 4.560 5 C -0.511 4.511 6 C -0.004 4.004 7 N -0.875 5.875 8 S 2.780 3.220 9 O -0.943 6.943 10 O -0.947 6.947 11 C -0.761 4.761 12 C -0.035 4.035 13 C -0.166 4.166 14 C -0.065 4.065 15 C -0.200 4.200 16 O -0.339 6.339 17 Si 0.769 3.231 18 H -0.171 1.171 19 H -0.173 1.173 20 H -0.172 1.172 21 C -0.130 4.130 22 C -0.036 4.036 23 H 0.090 0.910 24 H 0.089 0.911 25 H 0.089 0.911 26 H 0.088 0.912 27 H 0.089 0.911 28 H 0.088 0.912 29 H 0.088 0.912 30 H 0.089 0.911 31 H 0.088 0.912 32 H 0.106 0.894 33 H 0.104 0.896 34 H 0.085 0.915 35 H 0.101 0.899 36 H 0.255 0.745 37 H 0.163 0.837 38 H 0.149 0.851 39 H 0.142 0.858 40 H 0.226 0.774 41 H 0.157 0.843 42 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 0.795 2.168 -4.447 5.011 hybrid contribution 0.474 -0.106 0.132 0.503 sum 1.269 2.062 -4.315 4.948 Atomic orbital electron populations 1.26189 1.20617 1.04710 1.04702 0.79139 0.67149 0.66985 0.65738 1.26114 1.06274 1.18804 1.04622 1.26179 1.06349 1.08063 1.15458 1.26497 1.06697 1.00782 1.17128 1.21094 0.99696 0.93248 0.86316 1.55635 1.53236 1.38971 1.39693 1.02014 0.73917 0.72749 0.73320 1.93605 1.29265 1.85110 1.86351 1.93615 1.74300 1.81393 1.45359 1.31038 1.05320 1.20752 1.18977 1.20906 0.96832 0.95154 0.90645 1.21216 0.97446 0.97862 1.00069 1.20719 0.93985 0.95520 0.96261 1.25154 1.11428 0.82989 1.00452 1.86549 1.39382 1.28810 1.79145 0.85691 0.77660 0.81745 0.77957 1.17058 1.17331 1.17225 1.21193 1.00075 0.98116 0.93586 1.21018 0.93613 0.91790 0.97154 0.91022 0.91098 0.91051 0.91224 0.91087 0.91154 0.91216 0.91060 0.91168 0.89357 0.89585 0.91504 0.89918 0.74450 0.83733 0.85108 0.85833 0.77380 0.84314 0.83835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.45 1.14 8.65 101.05 0.87 2.01 16 2 Si 1.01 -4.15 12.19 -169.99 -2.07 -6.22 16 3 C -0.45 1.18 8.65 101.05 0.87 2.06 16 4 C -0.45 1.38 8.65 101.05 0.87 2.25 16 5 C -0.43 1.50 4.59 37.16 0.17 1.67 16 6 C 0.12 -0.29 5.60 -4.04 -0.02 -0.31 16 7 N -1.11 1.56 6.00 -10.62 -0.06 1.50 16 8 S 2.69 3.81 5.74 -107.50 -0.62 3.20 16 9 O -0.95 -3.89 16.75 -57.17 -0.96 -4.84 16 10 O -0.96 -4.09 17.28 -57.17 -0.99 -5.08 16 11 C -0.67 -0.40 5.95 -39.58 -0.24 -0.64 16 12 C -0.02 0.00 9.52 -39.58 -0.38 -0.38 16 13 C -0.15 0.08 8.67 -39.58 -0.34 -0.26 16 14 C -0.06 0.04 5.35 -104.62 -0.56 -0.52 16 15 C -0.09 0.14 2.80 36.01 0.10 0.24 16 16 O -0.53 0.35 12.83 -35.23 -0.45 -0.10 16 17 Si 0.95 -1.61 25.14 -169.99 -4.27 -5.88 16 18 H -0.25 0.34 7.11 56.52 0.40 0.74 16 19 H -0.25 0.03 7.11 56.52 0.40 0.43 16 20 H -0.25 0.37 7.04 56.52 0.40 0.77 16 21 C -0.11 0.03 9.69 -39.59 -0.38 -0.36 16 22 C -0.02 0.00 9.52 -39.59 -0.38 -0.38 16 23 H 0.07 -0.16 7.96 -51.93 -0.41 -0.57 16 24 H 0.07 -0.16 7.96 -51.93 -0.41 -0.58 16 25 H 0.07 -0.18 7.79 -51.93 -0.40 -0.59 16 26 H 0.07 -0.18 7.96 -51.93 -0.41 -0.59 16 27 H 0.07 -0.16 7.96 -51.93 -0.41 -0.58 16 28 H 0.07 -0.17 7.96 -51.93 -0.41 -0.58 16 29 H 0.07 -0.22 7.79 -51.93 -0.40 -0.63 16 30 H 0.07 -0.19 7.96 -51.93 -0.41 -0.60 16 31 H 0.07 -0.21 7.96 -51.93 -0.41 -0.62 16 32 H 0.09 -0.31 7.96 -51.93 -0.41 -0.72 16 33 H 0.09 -0.36 7.96 -51.93 -0.41 -0.77 16 34 H 0.07 -0.26 7.79 -51.93 -0.40 -0.67 16 35 H 0.08 -0.21 7.40 -51.93 -0.38 -0.59 16 36 H 0.42 -1.25 8.65 -34.47 -0.30 -1.55 16 37 H 0.14 -0.24 7.62 -52.49 -0.40 -0.64 16 38 H 0.13 -0.29 4.87 -52.49 -0.26 -0.54 16 39 H 0.12 -0.33 7.96 -51.93 -0.41 -0.74 16 40 H 0.38 -1.39 8.70 45.56 0.40 -0.99 16 41 H 0.14 -0.21 8.06 -52.49 -0.42 -0.63 16 42 H 0.14 -0.13 7.62 -52.49 -0.40 -0.53 16 LS Contribution 360.75 15.07 5.44 5.44 Total: 0.00 -9.08 360.75 -9.30 -18.39 By element: Atomic # 1 Polarization: -5.86 SS G_CDS: -5.91 Total: -11.77 kcal Atomic # 6 Polarization: 4.79 SS G_CDS: 0.60 Total: 5.39 kcal Atomic # 7 Polarization: 1.56 SS G_CDS: -0.06 Total: 1.50 kcal Atomic # 8 Polarization: -7.63 SS G_CDS: -2.40 Total: -10.03 kcal Atomic # 14 Polarization: -5.76 SS G_CDS: -6.35 Total: -12.10 kcal Atomic # 16 Polarization: 3.81 SS G_CDS: -0.62 Total: 3.20 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -9.08 -9.30 -18.39 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_9476126_13421422.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -110.990 kcal (2) G-P(sol) polarization free energy of solvation -9.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.388 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds