Wall clock time and date at job start Mon Mar 8 2021 15:47:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86297 * 1 3 3 C 1.86300 * 109.47047 * 2 1 4 4 C 1.86294 * 109.47301 * 240.00119 * 2 1 3 5 5 C 1.86298 * 109.46803 * 119.99903 * 2 1 3 6 6 C 1.52998 * 109.47203 * 60.00383 * 5 2 1 7 7 N 1.46500 * 109.46901 * 179.97438 * 6 5 2 8 8 S 1.65602 * 119.99756 * 164.99878 * 7 6 5 9 9 O 1.42099 * 106.40368 * 311.45872 * 8 7 6 10 10 O 1.42098 * 106.40092 * 178.54189 * 8 7 6 11 11 C 1.76199 * 107.21888 * 65.00258 * 8 7 6 12 12 C 1.38234 * 119.99788 * 269.72664 * 11 8 7 13 13 C 1.38240 * 120.00062 * 180.32474 * 12 11 8 14 14 C 1.38235 * 119.99708 * 359.94741 * 13 12 11 15 15 C 1.50704 * 119.99518 * 180.02562 * 14 13 12 16 16 O 1.42907 * 109.46673 * 245.02129 * 15 14 13 17 17 Si 1.86301 * 109.47374 * 5.01834 * 15 14 13 18 18 H 1.48502 * 109.46724 * 60.00187 * 17 15 14 19 19 H 1.48497 * 109.47038 * 180.02562 * 17 15 14 20 20 H 1.48497 * 109.47278 * 300.00286 * 17 15 14 21 21 C 1.38234 * 120.00204 * 0.02562 * 14 13 12 22 22 C 1.38230 * 119.99885 * 0.02562 * 21 14 13 23 23 H 1.08992 * 109.47603 * 300.00030 * 1 2 3 24 24 H 1.09000 * 109.47162 * 60.00304 * 1 2 3 25 25 H 1.09002 * 109.47016 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47097 * 179.97438 * 3 2 1 27 27 H 1.08994 * 109.47280 * 300.00069 * 3 2 1 28 28 H 1.09000 * 109.47072 * 59.99837 * 3 2 1 29 29 H 1.09002 * 109.47037 * 299.99928 * 4 2 1 30 30 H 1.09000 * 109.47358 * 59.99697 * 4 2 1 31 31 H 1.08996 * 109.47346 * 180.02562 * 4 2 1 32 32 H 1.09000 * 109.47253 * 300.00124 * 5 2 1 33 33 H 1.09003 * 109.46801 * 180.02562 * 5 2 1 34 34 H 1.09000 * 109.47228 * 59.99726 * 6 5 2 35 35 H 1.08996 * 109.46737 * 299.99602 * 6 5 2 36 36 H 0.97000 * 120.00299 * 344.99678 * 7 6 5 37 37 H 1.08001 * 120.00299 * 0.25146 * 12 11 8 38 38 H 1.07997 * 119.99868 * 179.97438 * 13 12 11 39 39 H 1.08999 * 109.46837 * 125.02482 * 15 14 13 40 40 H 0.96693 * 114.00184 * 59.99851 * 16 15 14 41 41 H 1.07992 * 119.99701 * 179.97438 * 21 14 13 42 42 H 1.08000 * 120.00356 * 179.97438 * 22 21 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4839 1.7565 0.0000 4 6 2.4840 -0.8782 -1.5211 5 6 2.4839 -0.8782 1.5212 6 6 1.9739 -2.3207 1.5211 7 7 2.4627 -3.0114 2.7170 8 16 1.7828 -4.4491 3.1789 9 8 0.3755 -4.2533 3.1554 10 8 2.4892 -4.8735 4.3365 11 6 2.1427 -5.6253 1.9173 12 6 1.2687 -5.7937 0.8597 13 6 1.5477 -6.7213 -0.1266 14 6 2.7012 -7.4797 -0.0557 15 6 3.0056 -8.4905 -1.1313 16 8 2.9830 -9.8046 -0.5700 17 14 1.7247 -8.3686 -2.4786 18 1 1.7482 -7.0031 -3.0617 19 1 2.0244 -9.3651 -3.5380 20 1 0.3803 -8.6408 -1.9096 21 6 3.5755 -7.3110 1.0017 22 6 3.2960 -6.3842 1.9884 23 1 -0.3634 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 3.5739 1.7565 0.0005 27 1 2.1206 2.2703 -0.8899 28 1 2.1206 2.2703 0.8900 29 1 2.1207 -1.9058 -1.5211 30 1 2.1207 -0.3644 -2.4111 31 1 3.5740 -0.8786 -1.5209 32 1 2.1205 -0.3644 2.4111 33 1 3.5739 -0.8778 1.5214 34 1 2.3373 -2.8345 0.6312 35 1 0.8840 -2.3207 1.5211 36 1 3.1846 -2.6267 3.2384 37 1 0.3673 -5.2014 0.8044 38 1 0.8646 -6.8531 -0.9527 39 1 3.9924 -8.2907 -1.5488 40 1 2.1335 -10.0508 -0.1792 41 1 4.4764 -7.9038 1.0572 42 1 3.9788 -6.2526 2.8148 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_9476126_13421422.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 15:47:05 Heat of formation + Delta-G solvation = -129.077008 kcal Electronic energy + Delta-G solvation = -22707.338251 eV Core-core repulsion = 19323.575713 eV Total energy + Delta-G solvation = -3383.762538 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 317.108 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.69631 -38.44649 -37.71069 -37.04265 -36.76872 -33.02863 -32.21937 -30.64163 -29.15530 -28.27670 -28.25947 -27.21678 -24.17237 -23.47677 -22.98923 -20.67077 -19.29799 -18.60616 -18.18913 -17.45169 -16.90641 -16.42754 -16.08588 -15.97589 -15.65114 -15.47774 -15.15215 -14.57315 -14.39972 -14.08637 -14.00391 -13.92451 -13.82070 -13.71101 -13.33993 -13.30062 -13.20961 -13.17505 -13.11550 -12.94651 -12.71744 -12.64178 -12.55306 -12.44762 -12.18441 -11.87226 -11.69452 -10.72700 -10.66958 -10.64910 -10.57695 -10.46239 -10.30739 -10.16109 -0.73820 -0.39251 0.16754 1.10464 1.42943 1.48772 1.76991 1.89007 2.01189 2.05559 2.10521 2.34043 2.68880 2.77820 3.21337 3.40587 3.53296 3.75396 3.81656 4.04638 4.16289 4.30200 4.33089 4.45435 4.62150 4.65149 4.73149 4.82659 4.85322 4.85742 4.89745 4.90868 4.92229 4.92731 4.93073 4.97425 5.09813 5.23307 5.50442 5.63078 5.68886 5.70121 5.72325 6.07534 6.60247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.476 4.476 2 Si 1.087 2.913 3 C -0.468 4.468 4 C -0.467 4.467 5 C -0.432 4.432 6 C 0.105 3.895 7 N -1.105 6.105 8 S 2.704 3.296 9 O -0.985 6.985 10 O -0.991 6.991 11 C -0.678 4.678 12 C -0.025 4.025 13 C -0.153 4.153 14 C -0.065 4.065 15 C -0.087 4.087 16 O -0.549 6.549 17 Si 0.976 3.024 18 H -0.248 1.248 19 H -0.274 1.274 20 H -0.250 1.250 21 C -0.117 4.117 22 C -0.027 4.027 23 H 0.066 0.934 24 H 0.067 0.933 25 H 0.071 0.929 26 H 0.070 0.930 27 H 0.066 0.934 28 H 0.066 0.934 29 H 0.073 0.927 30 H 0.066 0.934 31 H 0.071 0.929 32 H 0.088 0.912 33 H 0.097 0.903 34 H 0.085 0.915 35 H 0.083 0.917 36 H 0.428 0.572 37 H 0.157 0.843 38 H 0.146 0.854 39 H 0.134 0.866 40 H 0.390 0.610 41 H 0.149 0.851 42 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.868 2.358 -4.932 5.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.581 4.581 2 Si 1.278 2.722 3 C -0.575 4.575 4 C -0.574 4.574 5 C -0.517 4.517 6 C -0.019 4.019 7 N -0.869 5.869 8 S 2.796 3.204 9 O -0.974 6.974 10 O -0.981 6.981 11 C -0.766 4.766 12 C -0.044 4.044 13 C -0.171 4.171 14 C -0.065 4.065 15 C -0.198 4.198 16 O -0.356 6.356 17 Si 0.800 3.200 18 H -0.172 1.172 19 H -0.199 1.199 20 H -0.174 1.174 21 C -0.136 4.136 22 C -0.046 4.046 23 H 0.085 0.915 24 H 0.086 0.914 25 H 0.090 0.910 26 H 0.089 0.911 27 H 0.085 0.915 28 H 0.086 0.914 29 H 0.092 0.908 30 H 0.086 0.914 31 H 0.090 0.910 32 H 0.107 0.893 33 H 0.115 0.885 34 H 0.103 0.897 35 H 0.101 0.899 36 H 0.265 0.735 37 H 0.175 0.825 38 H 0.164 0.836 39 H 0.152 0.848 40 H 0.240 0.760 41 H 0.167 0.833 42 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 1.228 2.192 -5.112 5.697 hybrid contribution 0.335 -0.103 0.289 0.454 sum 1.563 2.090 -4.824 5.484 Atomic orbital electron populations 1.26453 1.22706 1.04640 1.04328 0.78015 0.64779 0.65015 0.64416 1.26342 1.06497 1.20319 1.04297 1.26343 1.06580 1.08532 1.15938 1.26616 1.07559 0.99959 1.17582 1.21408 1.00053 0.94044 0.86426 1.55411 1.53307 1.37941 1.40226 1.01297 0.73046 0.73127 0.72972 1.93560 1.31246 1.85734 1.86907 1.93562 1.74715 1.82263 1.47538 1.30847 1.05909 1.20940 1.18938 1.21143 0.97171 0.95522 0.90557 1.21434 0.97726 0.97583 1.00360 1.20879 0.93827 0.95489 0.96330 1.25206 1.12176 0.82406 0.99968 1.86519 1.40582 1.29169 1.79320 0.85288 0.77281 0.80678 0.76794 1.17202 1.19899 1.17410 1.21368 1.00607 0.98071 0.93513 1.21186 0.93750 0.92005 0.97649 0.91493 0.91407 0.90986 0.91118 0.91505 0.91427 0.90798 0.91447 0.91004 0.89294 0.88457 0.89704 0.89916 0.73500 0.82547 0.83630 0.84795 0.76050 0.83281 0.83240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.48 2.30 8.65 113.37 0.98 3.28 16 2 Si 1.09 -9.44 12.19 68.60 0.84 -8.60 16 3 C -0.47 2.50 8.65 113.37 0.98 3.49 16 4 C -0.47 3.19 8.65 113.37 0.98 4.17 16 5 C -0.43 3.40 4.59 71.98 0.33 3.73 16 6 C 0.11 -0.56 5.60 86.38 0.48 -0.07 16 7 N -1.10 3.06 6.00 -187.50 -1.12 1.94 16 8 S 2.70 9.65 5.74 -56.49 -0.32 9.33 16 9 O -0.98 -8.95 16.75 -128.00 -2.14 -11.10 16 10 O -0.99 -9.62 17.28 -128.00 -2.21 -11.83 16 11 C -0.68 -0.92 5.95 22.27 0.13 -0.79 16 12 C -0.02 0.01 9.52 22.27 0.21 0.22 16 13 C -0.15 0.29 8.67 22.27 0.19 0.48 16 14 C -0.06 0.12 5.35 -19.86 -0.11 0.01 16 15 C -0.09 0.35 2.80 71.24 0.20 0.55 16 16 O -0.55 1.05 12.83 -148.98 -1.91 -0.86 16 17 Si 0.98 -3.89 25.14 68.60 1.72 -2.16 16 18 H -0.25 0.93 7.11 99.48 0.71 1.64 16 19 H -0.27 -0.01 7.11 99.48 0.71 0.70 16 20 H -0.25 0.95 7.04 99.48 0.70 1.65 16 21 C -0.12 0.11 9.69 22.27 0.22 0.33 16 22 C -0.03 -0.01 9.52 22.27 0.21 0.20 16 23 H 0.07 -0.26 7.96 -2.39 -0.02 -0.28 16 24 H 0.07 -0.29 7.96 -2.39 -0.02 -0.31 16 25 H 0.07 -0.36 7.79 -2.39 -0.02 -0.38 16 26 H 0.07 -0.39 7.96 -2.39 -0.02 -0.40 16 27 H 0.07 -0.29 7.96 -2.39 -0.02 -0.31 16 28 H 0.07 -0.32 7.96 -2.39 -0.02 -0.34 16 29 H 0.07 -0.55 7.79 -2.39 -0.02 -0.57 16 30 H 0.07 -0.39 7.96 -2.39 -0.02 -0.40 16 31 H 0.07 -0.49 7.96 -2.39 -0.02 -0.51 16 32 H 0.09 -0.67 7.96 -2.39 -0.02 -0.69 16 33 H 0.10 -0.95 7.96 -2.39 -0.02 -0.97 16 34 H 0.08 -0.76 7.79 -2.39 -0.02 -0.78 16 35 H 0.08 -0.43 7.40 -2.39 -0.02 -0.45 16 36 H 0.43 -2.56 8.65 -96.74 -0.84 -3.39 16 37 H 0.16 -0.55 7.62 -2.91 -0.02 -0.57 16 38 H 0.15 -0.80 4.87 -2.91 -0.01 -0.81 16 39 H 0.13 -0.85 7.96 -2.39 -0.02 -0.86 16 40 H 0.39 -3.05 8.70 -74.06 -0.64 -3.70 16 41 H 0.15 -0.53 8.06 -2.91 -0.02 -0.55 16 42 H 0.15 -0.21 7.62 -2.91 -0.02 -0.23 16 Total: 0.00 -20.17 360.75 -0.05 -20.22 By element: Atomic # 1 Polarization: -12.81 SS G_CDS: 0.29 Total: -12.53 kcal Atomic # 6 Polarization: 10.77 SS G_CDS: 4.82 Total: 15.59 kcal Atomic # 7 Polarization: 3.06 SS G_CDS: -1.12 Total: 1.94 kcal Atomic # 8 Polarization: -17.52 SS G_CDS: -6.27 Total: -23.79 kcal Atomic # 14 Polarization: -13.32 SS G_CDS: 2.56 Total: -10.76 kcal Atomic # 16 Polarization: 9.65 SS G_CDS: -0.32 Total: 9.33 kcal Total: -20.17 -0.05 -20.22 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_9476126_13421422.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -108.856 kcal (2) G-P(sol) polarization free energy of solvation -20.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.221 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds