Wall clock time and date at job start Mon Mar 8 2021 15:47:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86292 * 1 3 3 C 1.86303 * 109.47258 * 2 1 4 4 C 1.86302 * 109.46969 * 240.00431 * 2 1 3 5 5 C 1.86300 * 109.47568 * 120.00154 * 2 1 3 6 6 C 1.52996 * 109.46733 * 59.99805 * 5 2 1 7 7 N 1.46506 * 109.47045 * 180.02562 * 6 5 2 8 8 S 1.65597 * 120.00079 * 164.72323 * 7 6 5 9 9 O 1.42100 * 106.40448 * 178.54099 * 8 7 6 10 10 O 1.42103 * 106.40365 * 311.46606 * 8 7 6 11 11 C 1.76197 * 107.21750 * 65.00357 * 8 7 6 12 12 C 1.33394 * 125.20678 * 179.71901 * 11 8 7 13 13 C 1.50697 * 122.53395 * 0.02562 * 12 11 8 14 14 O 1.42900 * 109.47470 * 75.00144 * 13 12 11 15 15 Si 1.86304 * 109.46900 * 195.00144 * 13 12 11 16 16 H 1.48498 * 109.47035 * 59.99959 * 15 13 12 17 17 H 1.48500 * 109.46987 * 180.02562 * 15 13 12 18 18 H 1.48498 * 109.47053 * 299.99827 * 15 13 12 19 19 C 1.38423 * 114.92254 * 179.85674 * 12 11 8 20 20 C 1.33394 * 114.92166 * 0.43457 * 19 12 11 21 21 S 1.75886 * 109.59340 * 359.76609 * 20 19 12 22 22 H 1.08997 * 109.47265 * 299.99863 * 1 2 3 23 23 H 1.09002 * 109.47262 * 59.99733 * 1 2 3 24 24 H 1.08997 * 109.47457 * 179.97438 * 1 2 3 25 25 H 1.08996 * 109.47720 * 180.02562 * 3 2 1 26 26 H 1.09002 * 109.47202 * 300.00303 * 3 2 1 27 27 H 1.08997 * 109.46870 * 59.99895 * 3 2 1 28 28 H 1.09003 * 109.47013 * 299.99436 * 4 2 1 29 29 H 1.09002 * 109.47263 * 59.99836 * 4 2 1 30 30 H 1.09006 * 109.47227 * 179.97438 * 4 2 1 31 31 H 1.08997 * 109.46814 * 300.00260 * 5 2 1 32 32 H 1.08996 * 109.46980 * 180.02562 * 5 2 1 33 33 H 1.08999 * 109.47565 * 60.00406 * 6 5 2 34 34 H 1.09000 * 109.47473 * 300.00408 * 6 5 2 35 35 H 0.97005 * 119.99811 * 345.00302 * 7 6 5 36 36 H 1.09003 * 109.47008 * 314.99743 * 13 12 11 37 37 H 0.96696 * 113.99922 * 59.99681 * 14 13 12 38 38 H 1.08000 * 122.54063 * 180.19765 * 19 12 11 39 39 H 1.07990 * 125.20212 * 179.78959 * 20 19 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8629 0.0000 0.0000 3 6 2.4840 1.7565 0.0000 4 6 2.4839 -0.8781 -1.5212 5 6 2.4841 -0.8782 1.5211 6 6 1.9740 -2.3207 1.5210 7 7 2.4620 -3.0112 2.7174 8 16 1.7771 -4.4453 3.1830 9 8 2.4836 -4.8704 4.3403 10 8 0.3706 -4.2440 3.1612 11 6 2.1304 -5.6252 1.9230 12 6 1.7495 -6.9036 1.9379 13 6 0.9498 -7.4978 3.0685 14 8 -0.4059 -7.0556 2.9771 15 14 1.0053 -9.3568 2.9584 16 1 2.4142 -9.8164 3.0534 17 1 0.2168 -9.9424 4.0721 18 1 0.4287 -9.7932 1.6614 19 6 2.1412 -7.6418 0.8345 20 6 2.8481 -6.9654 -0.0723 21 16 3.0458 -5.2997 0.4568 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 3.5739 1.7566 -0.0005 26 1 2.1206 2.2703 -0.8900 27 1 2.1206 2.2703 0.8900 28 1 2.1206 -1.9058 -1.5212 29 1 2.1205 -0.3643 -2.4112 30 1 3.5739 -0.8778 -1.5215 31 1 2.1207 -0.3645 2.4110 32 1 3.5740 -0.8778 1.5212 33 1 2.3373 -2.8346 0.6310 34 1 0.8840 -2.3207 1.5210 35 1 3.1835 -2.6263 3.2392 36 1 1.3731 -7.1775 4.0206 37 1 -0.8466 -7.3058 2.1536 38 1 1.8965 -8.6873 0.7183 39 1 3.2388 -7.3774 -0.9909 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_9476126_13652106.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 15:47:16 Heat of formation + Delta-G solvation = -116.416246 kcal Electronic energy + Delta-G solvation = -21807.077327 eV Core-core repulsion = 18513.016047 eV Total energy + Delta-G solvation = -3294.061280 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 323.064 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.08032 -38.07917 -37.08899 -36.96896 -36.68755 -31.49421 -30.84097 -29.37440 -28.51394 -28.46883 -28.03830 -24.38877 -23.77036 -21.62386 -19.89988 -19.73547 -18.55731 -17.95014 -17.28592 -16.76544 -16.33383 -15.99115 -15.88027 -15.72254 -15.58263 -14.59797 -14.46205 -14.23565 -14.14729 -14.03230 -13.93139 -13.80855 -13.42169 -13.33467 -13.29892 -13.15810 -13.02444 -12.91733 -12.83040 -12.67604 -12.60297 -12.51868 -12.24436 -12.18794 -11.59348 -10.94285 -10.88280 -10.86953 -10.64932 -10.55565 -10.44424 -9.70237 -0.68792 -0.61215 0.19487 0.54960 1.00750 1.18183 1.35251 1.47443 1.57742 1.75361 1.78347 1.84280 2.08187 2.53700 2.69548 3.34597 3.42938 3.71363 3.81845 3.90903 4.00462 4.03287 4.31534 4.40298 4.53253 4.62017 4.64251 4.65281 4.68118 4.69012 4.73716 4.74270 4.79079 4.82013 4.98610 5.23020 5.40481 5.46869 5.53159 5.87585 6.48327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.455 4.455 2 Si 1.013 2.987 3 C -0.450 4.450 4 C -0.453 4.453 5 C -0.426 4.426 6 C 0.120 3.880 7 N -1.117 6.117 8 S 2.711 3.289 9 O -0.951 6.951 10 O -0.925 6.925 11 C -0.763 4.763 12 C 0.003 3.997 13 C -0.112 4.112 14 O -0.517 6.517 15 Si 0.965 3.035 16 H -0.244 1.244 17 H -0.243 1.243 18 H -0.247 1.247 19 C -0.168 4.168 20 C -0.163 4.163 21 S 0.205 5.795 22 H 0.071 0.929 23 H 0.070 0.930 24 H 0.071 0.929 25 H 0.069 0.931 26 H 0.070 0.930 27 H 0.069 0.931 28 H 0.070 0.930 29 H 0.071 0.929 30 H 0.070 0.930 31 H 0.090 0.910 32 H 0.087 0.913 33 H 0.064 0.936 34 H 0.087 0.913 35 H 0.422 0.578 36 H 0.127 0.873 37 H 0.379 0.621 38 H 0.153 0.847 39 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.380 0.751 -5.457 6.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.563 4.563 2 Si 1.208 2.792 3 C -0.557 4.557 4 C -0.561 4.561 5 C -0.511 4.511 6 C -0.005 4.005 7 N -0.880 5.880 8 S 2.795 3.205 9 O -0.941 6.941 10 O -0.914 6.914 11 C -0.962 4.962 12 C -0.015 4.015 13 C -0.224 4.224 14 O -0.322 6.322 15 Si 0.784 3.216 16 H -0.168 1.168 17 H -0.166 1.166 18 H -0.170 1.170 19 C -0.198 4.198 20 C -0.301 4.301 21 S 0.471 5.529 22 H 0.090 0.910 23 H 0.089 0.911 24 H 0.090 0.910 25 H 0.088 0.912 26 H 0.089 0.911 27 H 0.089 0.911 28 H 0.089 0.911 29 H 0.090 0.910 30 H 0.089 0.911 31 H 0.108 0.892 32 H 0.105 0.895 33 H 0.082 0.918 34 H 0.105 0.895 35 H 0.258 0.742 36 H 0.145 0.855 37 H 0.226 0.774 38 H 0.170 0.830 39 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges 2.679 1.120 -4.930 5.722 hybrid contribution 0.025 -1.061 -0.518 1.181 sum 2.704 0.060 -5.449 6.083 Atomic orbital electron populations 1.26191 1.20580 1.04789 1.04713 0.79164 0.67237 0.67027 0.65732 1.26106 1.06261 1.18738 1.04639 1.26176 1.06353 1.08129 1.15416 1.26508 1.06764 1.00502 1.17326 1.21184 1.00120 0.93382 0.85833 1.55718 1.53395 1.39114 1.39795 1.01740 0.74207 0.72056 0.72540 1.93623 1.74565 1.81428 1.44463 1.93656 1.28130 1.84182 1.85442 1.35808 1.20650 1.16976 1.22773 1.19009 0.94895 0.91356 0.96194 1.25335 0.84564 1.13612 0.98876 1.86702 1.21117 1.80773 1.43569 0.85473 0.82259 0.72061 0.81767 1.16751 1.16641 1.17014 1.20324 1.02857 1.02180 0.94419 1.26159 1.02344 0.97736 1.03825 1.84077 1.49523 1.08911 1.10349 0.91005 0.91077 0.90993 0.91212 0.91074 0.91138 0.91125 0.91003 0.91110 0.89174 0.89457 0.91818 0.89505 0.74226 0.85534 0.77371 0.82973 0.80404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.46 0.94 8.65 101.05 0.87 1.82 16 2 Si 1.01 -3.90 12.19 -169.99 -2.07 -5.97 16 3 C -0.45 1.14 8.65 101.05 0.87 2.02 16 4 C -0.45 1.39 8.65 101.05 0.87 2.26 16 5 C -0.43 1.35 4.59 37.16 0.17 1.52 16 6 C 0.12 -0.18 5.34 -4.04 -0.02 -0.20 16 7 N -1.12 0.24 5.81 -10.61 -0.06 0.18 16 8 S 2.71 8.77 5.07 -107.50 -0.55 8.23 16 9 O -0.95 -5.49 17.48 -57.17 -1.00 -6.49 16 10 O -0.92 -5.39 16.92 -59.41 -1.01 -6.39 16 11 C -0.76 -1.46 6.46 29.04 0.19 -1.27 16 12 C 0.00 0.00 5.13 -106.25 -0.55 -0.54 16 13 C -0.11 -0.18 2.33 36.00 0.08 -0.10 16 14 O -0.52 -1.15 12.32 -35.88 -0.44 -1.59 16 15 Si 0.96 -0.29 25.72 -169.99 -4.37 -4.67 16 16 H -0.24 -0.02 7.11 56.52 0.40 0.39 16 17 H -0.24 -0.21 7.11 56.52 0.40 0.19 16 18 H -0.25 0.34 6.84 56.52 0.39 0.73 16 19 C -0.17 0.07 8.74 -41.21 -0.36 -0.29 16 20 C -0.16 0.24 11.23 29.04 0.33 0.57 16 21 S 0.21 -0.17 21.09 -107.50 -2.27 -2.44 16 22 H 0.07 -0.13 7.96 -51.93 -0.41 -0.54 16 23 H 0.07 -0.14 7.96 -51.93 -0.41 -0.56 16 24 H 0.07 -0.13 7.79 -51.93 -0.40 -0.54 16 25 H 0.07 -0.18 7.96 -51.93 -0.41 -0.59 16 26 H 0.07 -0.16 7.96 -51.93 -0.41 -0.57 16 27 H 0.07 -0.16 7.96 -51.93 -0.41 -0.58 16 28 H 0.07 -0.23 7.79 -51.93 -0.40 -0.63 16 29 H 0.07 -0.20 7.96 -51.93 -0.41 -0.61 16 30 H 0.07 -0.22 7.96 -51.93 -0.41 -0.64 16 31 H 0.09 -0.29 7.96 -51.93 -0.41 -0.70 16 32 H 0.09 -0.36 7.96 -51.93 -0.41 -0.77 16 33 H 0.06 -0.19 5.91 -51.93 -0.31 -0.50 16 34 H 0.09 -0.12 7.40 -51.93 -0.38 -0.50 16 35 H 0.42 -0.89 8.65 -34.47 -0.30 -1.19 16 36 H 0.13 0.27 7.23 -51.93 -0.38 -0.10 16 37 H 0.38 -0.70 8.70 45.56 0.40 -0.31 16 38 H 0.15 -0.35 5.56 -52.49 -0.29 -0.64 16 39 H 0.18 -0.77 8.06 -52.49 -0.42 -1.20 16 LS Contribution 346.21 15.07 5.22 5.22 Total: 0.00 -8.90 346.21 -9.11 -18.01 By element: Atomic # 1 Polarization: -4.84 SS G_CDS: -5.02 Total: -9.87 kcal Atomic # 6 Polarization: 3.31 SS G_CDS: 2.46 Total: 5.78 kcal Atomic # 7 Polarization: 0.24 SS G_CDS: -0.06 Total: 0.18 kcal Atomic # 8 Polarization: -12.03 SS G_CDS: -2.45 Total: -14.48 kcal Atomic # 14 Polarization: -4.19 SS G_CDS: -6.44 Total: -10.63 kcal Atomic # 16 Polarization: 8.61 SS G_CDS: -2.81 Total: 5.79 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -8.90 -9.11 -18.01 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_9476126_13652106.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.404 kcal (2) G-P(sol) polarization free energy of solvation -8.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.013 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds