Wall clock time and date at job start Mon Mar 8 2021 15:47:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86304 * 1 3 3 C 1.86305 * 109.47060 * 2 1 4 4 C 1.86301 * 109.46856 * 240.00261 * 2 1 3 5 5 C 1.86294 * 109.47255 * 119.99953 * 2 1 3 6 6 C 1.52999 * 109.47010 * 60.00069 * 5 2 1 7 7 N 1.46499 * 109.46885 * 179.97438 * 6 5 2 8 8 S 1.65608 * 119.99784 * 165.49784 * 7 6 5 9 9 O 1.42105 * 106.40205 * 178.42238 * 8 7 6 10 10 O 1.42099 * 106.40133 * 311.34207 * 8 7 6 11 11 C 1.76192 * 107.21740 * 64.88561 * 8 7 6 12 12 C 1.33390 * 122.54415 * 66.78088 * 11 8 7 13 13 C 1.50699 * 125.19839 * 0.02562 * 12 11 8 14 14 O 1.42898 * 109.47314 * 313.39179 * 13 12 11 15 15 Si 1.86307 * 109.46878 * 193.39678 * 13 12 11 16 16 H 1.48500 * 109.47049 * 59.99939 * 15 13 12 17 17 H 1.48491 * 109.47113 * 180.02562 * 15 13 12 18 18 H 1.48503 * 109.47171 * 300.00088 * 15 13 12 19 19 S 1.75890 * 109.59539 * 179.90551 * 12 11 8 20 20 C 1.75887 * 90.97064 * 0.29982 * 19 12 11 21 21 C 1.33390 * 109.59195 * 359.82868 * 20 19 12 22 22 H 1.08999 * 109.46999 * 299.99952 * 1 2 3 23 23 H 1.08991 * 109.47041 * 59.99974 * 1 2 3 24 24 H 1.09003 * 109.46875 * 180.02562 * 1 2 3 25 25 H 1.08995 * 109.47126 * 180.02562 * 3 2 1 26 26 H 1.09003 * 109.46998 * 300.00622 * 3 2 1 27 27 H 1.08999 * 109.46721 * 59.99876 * 3 2 1 28 28 H 1.08995 * 109.47276 * 299.99249 * 4 2 1 29 29 H 1.09001 * 109.47555 * 60.00034 * 4 2 1 30 30 H 1.09006 * 109.46973 * 179.97438 * 4 2 1 31 31 H 1.08999 * 109.47194 * 299.99975 * 5 2 1 32 32 H 1.09006 * 109.46974 * 180.02562 * 5 2 1 33 33 H 1.08999 * 109.46764 * 60.00201 * 6 5 2 34 34 H 1.08993 * 109.47307 * 300.00080 * 6 5 2 35 35 H 0.96998 * 120.00883 * 345.49726 * 7 6 5 36 36 H 1.08994 * 109.47098 * 73.40135 * 13 12 11 37 37 H 0.96698 * 114.00571 * 301.47905 * 14 13 12 38 38 H 1.07993 * 125.20470 * 179.86159 * 20 19 12 39 39 H 1.08003 * 122.53796 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4840 1.7565 0.0000 4 6 2.4840 -0.8782 -1.5212 5 6 2.4841 -0.8782 1.5211 6 6 1.9741 -2.3207 1.5211 7 7 2.4630 -3.0114 2.7169 8 16 1.7914 -4.4553 3.1718 9 8 2.4980 -4.8794 4.3295 10 8 0.3830 -4.2685 3.1459 11 6 2.1618 -5.6243 1.9067 12 6 3.4041 -6.0395 1.6548 13 6 4.6379 -5.5856 2.3915 14 8 4.6217 -4.1621 2.5161 15 14 6.1545 -6.1086 1.4442 16 1 6.1305 -5.4936 0.0927 17 1 7.3702 -5.6619 2.1704 18 1 6.1714 -7.5879 1.3145 19 16 3.3816 -7.2003 0.3335 20 6 1.6357 -7.0452 0.1874 21 6 1.1862 -6.1773 1.0951 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 3.5740 1.7565 -0.0005 26 1 2.1206 2.2704 -0.8900 27 1 2.1206 2.2703 0.8900 28 1 2.1207 -1.9058 -1.5212 29 1 2.1206 -0.3643 -2.4112 30 1 3.5740 -0.8778 -1.5215 31 1 2.1208 -0.3644 2.4111 32 1 3.5741 -0.8778 1.5213 33 1 2.3375 -2.8344 0.6311 34 1 0.8842 -2.3207 1.5211 35 1 3.1800 -2.6232 3.2423 36 1 4.6555 -6.0371 3.3834 37 1 4.5829 -3.6937 1.6711 38 1 1.0215 -7.5725 -0.5275 39 1 0.1403 -5.9253 1.1898 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_9476126_14772022.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 15:47:25 Heat of formation + Delta-G solvation = -113.995024 kcal Electronic energy + Delta-G solvation = -22331.688508 eV Core-core repulsion = 19037.732221 eV Total energy + Delta-G solvation = -3293.956287 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 323.064 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.72370 -38.18794 -37.60669 -36.64830 -36.57671 -31.86699 -30.69800 -29.33781 -28.50817 -28.46041 -27.54102 -24.46690 -23.56231 -21.76268 -19.98564 -19.37814 -18.60046 -17.98900 -17.09977 -17.01530 -16.52724 -15.98684 -15.90310 -15.58351 -15.05128 -14.66830 -14.45917 -14.24130 -14.14808 -14.05344 -13.93817 -13.90777 -13.38590 -13.30533 -13.23204 -13.15164 -12.98618 -12.90259 -12.79786 -12.76996 -12.70055 -12.55632 -12.32964 -12.13161 -11.58758 -10.99071 -10.91355 -10.86654 -10.81859 -10.33926 -10.18438 -9.82840 -0.61911 -0.44032 0.28523 0.54600 0.86401 1.10718 1.21843 1.32304 1.63613 1.70513 1.77256 1.79627 2.25999 2.57203 2.86547 3.09555 3.27188 3.60052 3.94858 4.04748 4.11656 4.21174 4.39857 4.48601 4.59464 4.64190 4.65331 4.68721 4.69051 4.73351 4.74548 4.80241 4.88296 4.90013 5.10680 5.30705 5.41762 5.47360 5.53608 6.13382 6.21043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.456 4.456 2 Si 1.015 2.985 3 C -0.451 4.451 4 C -0.453 4.453 5 C -0.424 4.424 6 C 0.122 3.878 7 N -1.101 6.101 8 S 2.713 3.287 9 O -0.949 6.949 10 O -0.961 6.961 11 C -0.663 4.663 12 C -0.101 4.101 13 C -0.075 4.075 14 O -0.527 6.527 15 Si 0.909 3.091 16 H -0.235 1.235 17 H -0.220 1.220 18 H -0.229 1.229 19 S 0.137 5.863 20 C -0.207 4.207 21 C -0.076 4.076 22 H 0.070 0.930 23 H 0.069 0.931 24 H 0.070 0.930 25 H 0.068 0.932 26 H 0.069 0.931 27 H 0.069 0.931 28 H 0.069 0.931 29 H 0.069 0.931 30 H 0.069 0.931 31 H 0.088 0.912 32 H 0.086 0.914 33 H 0.063 0.937 34 H 0.080 0.920 35 H 0.425 0.575 36 H 0.152 0.848 37 H 0.380 0.620 38 H 0.176 0.824 39 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.638 1.474 -4.964 5.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.563 4.563 2 Si 1.210 2.790 3 C -0.559 4.559 4 C -0.560 4.560 5 C -0.510 4.510 6 C -0.003 4.003 7 N -0.866 5.866 8 S 2.798 3.202 9 O -0.939 6.939 10 O -0.951 6.951 11 C -0.762 4.762 12 C -0.222 4.222 13 C -0.187 4.187 14 O -0.333 6.333 15 Si 0.727 3.273 16 H -0.157 1.157 17 H -0.142 1.142 18 H -0.152 1.152 19 S 0.401 5.599 20 C -0.343 4.343 21 C -0.105 4.105 22 H 0.089 0.911 23 H 0.088 0.912 24 H 0.090 0.910 25 H 0.088 0.912 26 H 0.088 0.912 27 H 0.088 0.912 28 H 0.088 0.912 29 H 0.089 0.911 30 H 0.088 0.912 31 H 0.107 0.893 32 H 0.105 0.895 33 H 0.081 0.919 34 H 0.099 0.901 35 H 0.264 0.736 36 H 0.169 0.831 37 H 0.229 0.771 38 H 0.193 0.807 39 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 3.881 -0.071 -4.952 6.292 hybrid contribution -1.062 0.764 -0.185 1.321 sum 2.819 0.693 -5.137 5.900 Atomic orbital electron populations 1.26202 1.20781 1.04708 1.04615 0.79131 0.67097 0.66910 0.65839 1.26127 1.06241 1.18928 1.04569 1.26182 1.06260 1.08085 1.15503 1.26477 1.06673 1.00895 1.16907 1.21039 0.99765 0.93036 0.86489 1.55646 1.53534 1.38060 1.39346 1.01488 0.73221 0.72616 0.72876 1.93591 1.74127 1.81316 1.44870 1.93581 1.29735 1.85397 1.86398 1.30045 0.98654 1.23797 1.23696 1.25055 0.98171 0.99894 0.99063 1.24988 1.00436 0.85776 1.07500 1.86579 1.96420 1.14886 1.35398 0.86071 0.78373 0.82768 0.80116 1.15707 1.14236 1.15234 1.84488 1.05967 1.40594 1.28874 1.25856 0.96985 1.05659 1.05812 1.19806 1.00478 0.96362 0.93804 0.91062 0.91208 0.91041 0.91243 0.91187 0.91170 0.91217 0.91144 0.91201 0.89347 0.89499 0.91918 0.90142 0.73644 0.83108 0.77088 0.80695 0.82276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.46 1.01 8.65 101.05 0.87 1.89 16 2 Si 1.01 -4.28 12.19 -169.99 -2.07 -6.35 16 3 C -0.45 1.19 8.65 101.05 0.87 2.07 16 4 C -0.45 1.49 8.65 101.05 0.87 2.36 16 5 C -0.42 1.65 4.59 37.16 0.17 1.82 16 6 C 0.12 -0.31 5.59 -4.04 -0.02 -0.34 16 7 N -1.10 1.23 3.94 -10.62 -0.04 1.19 16 8 S 2.71 6.43 4.94 -107.50 -0.53 5.90 16 9 O -0.95 -4.92 16.66 -60.81 -1.01 -5.94 16 10 O -0.96 -4.90 16.83 -57.17 -0.96 -5.86 16 11 C -0.66 -0.73 5.77 -41.20 -0.24 -0.97 16 12 C -0.10 -0.01 5.73 -36.00 -0.21 -0.22 16 13 C -0.07 0.07 2.07 36.01 0.07 0.15 16 14 O -0.53 1.05 8.64 -39.14 -0.34 0.72 16 15 Si 0.91 -1.54 26.37 -169.99 -4.48 -6.02 16 16 H -0.23 0.46 7.11 56.52 0.40 0.86 16 17 H -0.22 0.21 7.11 56.52 0.40 0.62 16 18 H -0.23 0.27 7.11 56.52 0.40 0.68 16 19 S 0.14 -0.07 20.70 -107.50 -2.23 -2.29 16 20 C -0.21 0.13 11.23 29.04 0.33 0.45 16 21 C -0.08 -0.04 9.70 -41.20 -0.40 -0.44 16 22 H 0.07 -0.13 7.96 -51.93 -0.41 -0.55 16 23 H 0.07 -0.14 7.96 -51.93 -0.41 -0.55 16 24 H 0.07 -0.15 7.79 -51.93 -0.40 -0.55 16 25 H 0.07 -0.19 7.96 -51.93 -0.41 -0.60 16 26 H 0.07 -0.16 7.96 -51.93 -0.41 -0.57 16 27 H 0.07 -0.16 7.96 -51.93 -0.41 -0.58 16 28 H 0.07 -0.24 7.79 -51.93 -0.40 -0.64 16 29 H 0.07 -0.19 7.96 -51.93 -0.41 -0.60 16 30 H 0.07 -0.24 7.96 -51.93 -0.41 -0.65 16 31 H 0.09 -0.31 7.96 -51.93 -0.41 -0.72 16 32 H 0.09 -0.44 7.96 -51.93 -0.41 -0.85 16 33 H 0.06 -0.28 7.79 -51.93 -0.40 -0.69 16 34 H 0.08 -0.16 7.41 -51.93 -0.38 -0.55 16 35 H 0.43 -0.97 7.57 -34.47 -0.26 -1.23 16 36 H 0.15 -0.11 7.74 -51.93 -0.40 -0.52 16 37 H 0.38 -2.03 8.35 45.56 0.38 -1.65 16 38 H 0.18 -0.51 8.06 -52.49 -0.42 -0.93 16 39 H 0.16 -0.02 7.74 -52.48 -0.41 -0.43 16 LS Contribution 344.11 15.07 5.19 5.19 Total: 0.00 -8.06 344.11 -9.38 -17.44 By element: Atomic # 1 Polarization: -5.50 SS G_CDS: -5.23 Total: -10.72 kcal Atomic # 6 Polarization: 4.43 SS G_CDS: 2.33 Total: 6.76 kcal Atomic # 7 Polarization: 1.23 SS G_CDS: -0.04 Total: 1.19 kcal Atomic # 8 Polarization: -8.77 SS G_CDS: -2.31 Total: -11.08 kcal Atomic # 14 Polarization: -5.82 SS G_CDS: -6.55 Total: -12.37 kcal Atomic # 16 Polarization: 6.36 SS G_CDS: -2.76 Total: 3.60 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -8.06 -9.38 -17.44 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_9476126_14772022.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.553 kcal (2) G-P(sol) polarization free energy of solvation -8.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.442 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds