Wall clock time and date at job start Mon Mar 8 2021 15:47:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86304 * 1 3 3 C 1.86305 * 109.47060 * 2 1 4 4 C 1.86301 * 109.46856 * 240.00261 * 2 1 3 5 5 C 1.86294 * 109.47255 * 119.99953 * 2 1 3 6 6 C 1.52999 * 109.47010 * 60.00069 * 5 2 1 7 7 N 1.46499 * 109.46885 * 179.97438 * 6 5 2 8 8 S 1.65608 * 119.99784 * 165.49784 * 7 6 5 9 9 O 1.42105 * 106.40205 * 178.42238 * 8 7 6 10 10 O 1.42099 * 106.40133 * 311.34207 * 8 7 6 11 11 C 1.76192 * 107.21740 * 64.88561 * 8 7 6 12 12 C 1.33390 * 122.54415 * 66.78088 * 11 8 7 13 13 C 1.50699 * 125.19839 * 0.02562 * 12 11 8 14 14 O 1.42898 * 109.47314 * 313.39179 * 13 12 11 15 15 Si 1.86307 * 109.46878 * 193.39678 * 13 12 11 16 16 H 1.48500 * 109.47049 * 59.99939 * 15 13 12 17 17 H 1.48491 * 109.47113 * 180.02562 * 15 13 12 18 18 H 1.48503 * 109.47171 * 300.00088 * 15 13 12 19 19 S 1.75890 * 109.59539 * 179.90551 * 12 11 8 20 20 C 1.75887 * 90.97064 * 0.29982 * 19 12 11 21 21 C 1.33390 * 109.59195 * 359.82868 * 20 19 12 22 22 H 1.08999 * 109.46999 * 299.99952 * 1 2 3 23 23 H 1.08991 * 109.47041 * 59.99974 * 1 2 3 24 24 H 1.09003 * 109.46875 * 180.02562 * 1 2 3 25 25 H 1.08995 * 109.47126 * 180.02562 * 3 2 1 26 26 H 1.09003 * 109.46998 * 300.00622 * 3 2 1 27 27 H 1.08999 * 109.46721 * 59.99876 * 3 2 1 28 28 H 1.08995 * 109.47276 * 299.99249 * 4 2 1 29 29 H 1.09001 * 109.47555 * 60.00034 * 4 2 1 30 30 H 1.09006 * 109.46973 * 179.97438 * 4 2 1 31 31 H 1.08999 * 109.47194 * 299.99975 * 5 2 1 32 32 H 1.09006 * 109.46974 * 180.02562 * 5 2 1 33 33 H 1.08999 * 109.46764 * 60.00201 * 6 5 2 34 34 H 1.08993 * 109.47307 * 300.00080 * 6 5 2 35 35 H 0.96998 * 120.00883 * 345.49726 * 7 6 5 36 36 H 1.08994 * 109.47098 * 73.40135 * 13 12 11 37 37 H 0.96698 * 114.00571 * 301.47905 * 14 13 12 38 38 H 1.07993 * 125.20470 * 179.86159 * 20 19 12 39 39 H 1.08003 * 122.53796 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4840 1.7565 0.0000 4 6 2.4840 -0.8782 -1.5212 5 6 2.4841 -0.8782 1.5211 6 6 1.9741 -2.3207 1.5211 7 7 2.4630 -3.0114 2.7169 8 16 1.7914 -4.4553 3.1718 9 8 2.4980 -4.8794 4.3295 10 8 0.3830 -4.2685 3.1459 11 6 2.1618 -5.6243 1.9067 12 6 3.4041 -6.0395 1.6548 13 6 4.6379 -5.5856 2.3915 14 8 4.6217 -4.1621 2.5161 15 14 6.1545 -6.1086 1.4442 16 1 6.1305 -5.4936 0.0927 17 1 7.3702 -5.6619 2.1704 18 1 6.1714 -7.5879 1.3145 19 16 3.3816 -7.2003 0.3335 20 6 1.6357 -7.0452 0.1874 21 6 1.1862 -6.1773 1.0951 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 3.5740 1.7565 -0.0005 26 1 2.1206 2.2704 -0.8900 27 1 2.1206 2.2703 0.8900 28 1 2.1207 -1.9058 -1.5212 29 1 2.1206 -0.3643 -2.4112 30 1 3.5740 -0.8778 -1.5215 31 1 2.1208 -0.3644 2.4111 32 1 3.5741 -0.8778 1.5213 33 1 2.3375 -2.8344 0.6311 34 1 0.8842 -2.3207 1.5211 35 1 3.1800 -2.6232 3.2423 36 1 4.6555 -6.0371 3.3834 37 1 4.5829 -3.6937 1.6711 38 1 1.0215 -7.5725 -0.5275 39 1 0.1403 -5.9253 1.1898 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_9476126_14772022.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 15:47:25 Heat of formation + Delta-G solvation = -112.248375 kcal Electronic energy + Delta-G solvation = -22331.612768 eV Core-core repulsion = 19037.732221 eV Total energy + Delta-G solvation = -3293.880547 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 323.064 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.66787 -38.37815 -37.55394 -36.90421 -36.48418 -31.80508 -30.51624 -29.10933 -28.25429 -28.22851 -27.49868 -24.41490 -23.35221 -21.78620 -20.05019 -19.30644 -18.63795 -18.05660 -17.03632 -17.00116 -16.42531 -15.93255 -15.73912 -15.55993 -15.06782 -14.53928 -14.32454 -14.12242 -13.97415 -13.89805 -13.82815 -13.67888 -13.24962 -13.18029 -13.14843 -13.12402 -13.08942 -12.91993 -12.82502 -12.70877 -12.58612 -12.38496 -12.19259 -12.06777 -11.57441 -10.86499 -10.67591 -10.63395 -10.56722 -10.21628 -10.14804 -9.78525 -0.65779 -0.50226 0.32914 0.59449 0.97754 1.10739 1.37388 1.46093 1.84061 1.89541 2.06018 2.08872 2.30024 2.74825 2.81898 3.21149 3.37767 3.53344 4.12418 4.16940 4.25128 4.39048 4.48842 4.67574 4.73520 4.85590 4.87373 4.88385 4.91264 4.91479 4.93731 4.96215 4.97902 5.12729 5.18301 5.58302 5.67420 5.71826 5.75499 6.32766 6.51118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.481 4.481 2 Si 1.090 2.910 3 C -0.469 4.469 4 C -0.465 4.465 5 C -0.429 4.429 6 C 0.109 3.891 7 N -1.089 6.089 8 S 2.720 3.280 9 O -0.984 6.984 10 O -0.996 6.996 11 C -0.670 4.670 12 C -0.103 4.103 13 C -0.081 4.081 14 O -0.533 6.533 15 Si 0.935 3.065 16 H -0.224 1.224 17 H -0.232 1.232 18 H -0.237 1.237 19 S 0.153 5.847 20 C -0.203 4.203 21 C -0.095 4.095 22 H 0.064 0.936 23 H 0.064 0.936 24 H 0.068 0.932 25 H 0.072 0.928 26 H 0.063 0.937 27 H 0.065 0.935 28 H 0.072 0.928 29 H 0.063 0.937 30 H 0.076 0.924 31 H 0.085 0.915 32 H 0.106 0.894 33 H 0.087 0.913 34 H 0.072 0.928 35 H 0.432 0.568 36 H 0.144 0.856 37 H 0.395 0.605 38 H 0.198 0.802 39 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.683 1.371 -6.158 7.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.585 4.585 2 Si 1.280 2.720 3 C -0.575 4.575 4 C -0.572 4.572 5 C -0.514 4.514 6 C -0.016 4.016 7 N -0.857 5.857 8 S 2.808 3.192 9 O -0.975 6.975 10 O -0.986 6.986 11 C -0.771 4.771 12 C -0.225 4.225 13 C -0.193 4.193 14 O -0.341 6.341 15 Si 0.752 3.248 16 H -0.146 1.146 17 H -0.155 1.155 18 H -0.161 1.161 19 S 0.417 5.583 20 C -0.339 4.339 21 C -0.123 4.123 22 H 0.083 0.917 23 H 0.084 0.916 24 H 0.087 0.913 25 H 0.091 0.909 26 H 0.083 0.917 27 H 0.084 0.916 28 H 0.092 0.908 29 H 0.083 0.917 30 H 0.095 0.905 31 H 0.104 0.896 32 H 0.124 0.876 33 H 0.105 0.895 34 H 0.090 0.910 35 H 0.272 0.728 36 H 0.161 0.839 37 H 0.246 0.754 38 H 0.215 0.785 39 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 4.894 -0.132 -6.134 7.848 hybrid contribution -1.394 0.818 0.142 1.623 sum 3.499 0.686 -5.992 6.973 Atomic orbital electron populations 1.26534 1.23574 1.04347 1.04090 0.77974 0.64193 0.65006 0.64786 1.26357 1.06629 1.20411 1.04114 1.26319 1.06837 1.08413 1.15645 1.26577 1.08040 0.99748 1.17039 1.21343 0.99661 0.94023 0.86620 1.55387 1.53483 1.36768 1.40013 1.00869 0.72381 0.73262 0.72722 1.93539 1.74483 1.82257 1.47171 1.93533 1.31953 1.86090 1.87053 1.29800 0.99343 1.24238 1.23745 1.25257 0.98185 0.99785 0.99226 1.25112 1.00499 0.86349 1.07302 1.86550 1.96335 1.14431 1.36793 0.85714 0.76939 0.82066 0.80032 1.14629 1.15483 1.16067 1.84441 1.05942 1.39882 1.28080 1.26156 0.97255 1.04916 1.05549 1.19911 1.00589 0.97274 0.94509 0.91718 0.91632 0.91326 0.90879 0.91729 0.91594 0.90844 0.91729 0.90504 0.89575 0.87564 0.89501 0.90963 0.72825 0.83895 0.75357 0.78495 0.82245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.48 1.81 8.65 113.37 0.98 2.79 16 2 Si 1.09 -9.80 12.19 68.60 0.84 -8.96 16 3 C -0.47 2.60 8.65 113.37 0.98 3.58 16 4 C -0.47 3.59 8.65 113.37 0.98 4.57 16 5 C -0.43 3.77 4.59 71.98 0.33 4.10 16 6 C 0.11 -0.61 5.59 86.38 0.48 -0.13 16 7 N -1.09 2.28 3.94 -187.50 -0.74 1.54 16 8 S 2.72 16.03 4.94 -56.49 -0.28 15.76 16 9 O -0.98 -11.78 16.66 -124.53 -2.07 -13.86 16 10 O -1.00 -11.90 16.83 -128.00 -2.15 -14.05 16 11 C -0.67 -1.74 5.77 21.22 0.12 -1.62 16 12 C -0.10 -0.01 5.73 24.59 0.14 0.13 16 13 C -0.08 0.16 2.07 71.24 0.15 0.31 16 14 O -0.53 2.35 8.64 -145.25 -1.25 1.10 16 15 Si 0.94 -3.82 26.37 68.60 1.81 -2.01 16 16 H -0.22 1.29 7.11 99.48 0.71 1.99 16 17 H -0.23 0.52 7.11 99.48 0.71 1.23 16 18 H -0.24 0.69 7.11 99.48 0.71 1.40 16 19 S 0.15 -0.29 20.70 -56.49 -1.17 -1.46 16 20 C -0.20 0.41 11.23 66.72 0.75 1.16 16 21 C -0.09 -0.13 9.70 21.22 0.21 0.08 16 22 H 0.06 -0.17 7.96 -2.39 -0.02 -0.19 16 23 H 0.06 -0.21 7.96 -2.39 -0.02 -0.22 16 24 H 0.07 -0.23 7.79 -2.39 -0.02 -0.24 16 25 H 0.07 -0.45 7.96 -2.39 -0.02 -0.47 16 26 H 0.06 -0.28 7.96 -2.39 -0.02 -0.30 16 27 H 0.06 -0.30 7.96 -2.39 -0.02 -0.32 16 28 H 0.07 -0.60 7.79 -2.39 -0.02 -0.62 16 29 H 0.06 -0.39 7.96 -2.39 -0.02 -0.41 16 30 H 0.08 -0.67 7.96 -2.38 -0.02 -0.69 16 31 H 0.09 -0.66 7.96 -2.39 -0.02 -0.68 16 32 H 0.11 -1.31 7.96 -2.38 -0.02 -1.33 16 33 H 0.09 -0.90 7.79 -2.39 -0.02 -0.92 16 34 H 0.07 -0.27 7.41 -2.39 -0.02 -0.28 16 35 H 0.43 -2.02 7.57 -96.75 -0.73 -2.75 16 36 H 0.14 -0.09 7.74 -2.39 -0.02 -0.11 16 37 H 0.40 -4.72 8.35 -74.06 -0.62 -5.34 16 38 H 0.20 -1.44 8.06 -2.91 -0.02 -1.46 16 39 H 0.16 0.10 7.74 -2.91 -0.02 0.08 16 Total: 0.00 -19.17 344.11 0.56 -18.61 By element: Atomic # 1 Polarization: -12.09 SS G_CDS: 0.46 Total: -11.63 kcal Atomic # 6 Polarization: 9.86 SS G_CDS: 5.12 Total: 14.98 kcal Atomic # 7 Polarization: 2.28 SS G_CDS: -0.74 Total: 1.54 kcal Atomic # 8 Polarization: -21.33 SS G_CDS: -5.48 Total: -26.81 kcal Atomic # 14 Polarization: -13.62 SS G_CDS: 2.65 Total: -10.98 kcal Atomic # 16 Polarization: 15.74 SS G_CDS: -1.45 Total: 14.29 kcal Total: -19.17 0.56 -18.61 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_9476126_14772022.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.640 kcal (2) G-P(sol) polarization free energy of solvation -19.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.609 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds