Wall clock time and date at job start Mon Mar 8 2021 15:47:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86301 * 1 3 3 C 1.86292 * 109.47300 * 2 1 4 4 C 1.86304 * 109.46900 * 239.99763 * 2 1 3 5 5 C 1.86306 * 109.46910 * 119.99890 * 2 1 3 6 6 C 1.53004 * 109.47116 * 59.99746 * 5 2 1 7 7 N 1.46499 * 109.47094 * 179.97438 * 6 5 2 8 8 S 1.65597 * 119.99926 * 165.27799 * 7 6 5 9 9 O 1.42096 * 106.40195 * 178.26439 * 8 7 6 10 10 O 1.42108 * 106.40105 * 311.18495 * 8 7 6 11 11 C 1.76199 * 107.22117 * 64.72196 * 8 7 6 12 12 C 1.33390 * 122.54075 * 269.71156 * 11 8 7 13 13 S 1.75890 * 109.59293 * 179.90130 * 12 11 8 14 14 C 1.75878 * 90.97067 * 0.30204 * 13 12 11 15 15 C 1.50703 * 125.20287 * 179.78823 * 14 13 12 16 16 O 1.42900 * 109.46570 * 120.04397 * 15 14 13 17 17 Si 1.86298 * 109.46912 * 0.04645 * 15 14 13 18 18 H 1.48496 * 109.47026 * 299.99369 * 17 15 14 19 19 H 1.48497 * 109.47343 * 59.99640 * 17 15 14 20 20 H 1.48507 * 109.46942 * 179.97438 * 17 15 14 21 21 C 1.33389 * 109.59513 * 359.82969 * 14 13 12 22 22 H 1.09007 * 109.46954 * 300.00116 * 1 2 3 23 23 H 1.09000 * 109.46760 * 59.99409 * 1 2 3 24 24 H 1.08998 * 109.47609 * 180.02562 * 1 2 3 25 25 H 1.09009 * 109.46892 * 179.97438 * 3 2 1 26 26 H 1.09000 * 109.47565 * 299.99477 * 3 2 1 27 27 H 1.08998 * 109.47251 * 60.00269 * 3 2 1 28 28 H 1.08998 * 109.46961 * 300.00362 * 4 2 1 29 29 H 1.08996 * 109.46932 * 60.00078 * 4 2 1 30 30 H 1.09002 * 109.46595 * 180.02562 * 4 2 1 31 31 H 1.08994 * 109.47259 * 300.00090 * 5 2 1 32 32 H 1.09002 * 109.47093 * 179.97438 * 5 2 1 33 33 H 1.09007 * 109.47007 * 59.99848 * 6 5 2 34 34 H 1.08995 * 109.47080 * 300.00091 * 6 5 2 35 35 H 0.97001 * 119.99790 * 344.99588 * 7 6 5 36 36 H 1.08001 * 125.20245 * 0.02562 * 12 11 8 37 37 H 1.09001 * 109.47307 * 240.04203 * 15 14 13 38 38 H 0.96708 * 113.99996 * 180.02562 * 16 15 14 39 39 H 1.07999 * 122.53888 * 180.02562 * 21 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4840 1.7564 0.0000 4 6 2.4840 -0.8783 -1.5212 5 6 2.4840 -0.8782 1.5212 6 6 1.9739 -2.3207 1.5213 7 7 2.4627 -3.0115 2.7171 8 16 1.7873 -4.4525 3.1751 9 8 2.4971 -4.8792 4.3298 10 8 0.3795 -4.2602 3.1550 11 6 2.1476 -5.6233 1.9086 12 6 1.3389 -5.8256 0.8673 13 16 2.0256 -7.0588 -0.1820 14 6 3.4088 -7.2421 0.8887 15 6 4.5543 -8.1973 0.6724 16 8 5.7758 -7.4619 0.5765 17 14 4.2783 -9.1511 -0.9039 18 1 3.0089 -9.9152 -0.8042 19 1 4.1990 -8.2064 -2.0468 20 1 5.4074 -10.0919 -1.1173 21 6 3.2885 -6.4071 1.9219 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5139 -0.8899 24 1 -0.3634 -1.0276 0.0005 25 1 3.5741 1.7563 0.0005 26 1 2.1208 2.2702 -0.8900 27 1 2.1208 2.2702 0.8900 28 1 2.1205 -1.9059 -1.5211 29 1 2.1206 -0.3645 -2.4111 30 1 3.5740 -0.8787 -1.5209 31 1 2.1206 -0.3644 2.4111 32 1 3.5740 -0.8787 1.5210 33 1 2.3372 -2.8346 0.6312 34 1 0.8839 -2.3207 1.5212 35 1 3.1846 -2.6268 3.2384 36 1 0.4061 -5.3095 0.6940 37 1 4.6125 -8.8907 1.5114 38 1 6.5573 -8.0141 0.4363 39 1 4.0256 -6.3468 2.7089 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_9476126_15065232.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 15:47:35 Heat of formation + Delta-G solvation = -120.492396 kcal Electronic energy + Delta-G solvation = -21283.445065 eV Core-core repulsion = 17989.207030 eV Total energy + Delta-G solvation = -3294.238035 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 323.064 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.39810 -38.18816 -37.61291 -36.86518 -36.76970 -31.97923 -30.78803 -29.35612 -28.49702 -28.47274 -27.23213 -24.84345 -23.68002 -21.19994 -20.16408 -19.05763 -18.56656 -18.37664 -17.75016 -17.15583 -16.49727 -16.02744 -15.69196 -15.52486 -14.95912 -14.53459 -14.30448 -14.23705 -14.16501 -14.07729 -14.03402 -13.92234 -13.39118 -13.31878 -13.29349 -13.15222 -13.07346 -12.97066 -12.86989 -12.82748 -12.67479 -12.58886 -12.49132 -12.20610 -11.61467 -10.92353 -10.87585 -10.84671 -10.63284 -10.53054 -10.12148 -9.81823 -0.69348 -0.44994 0.26087 0.54504 0.93953 1.06595 1.29255 1.33076 1.61681 1.74148 1.76572 1.79604 2.17750 2.55396 2.79314 3.16466 3.42253 3.68070 3.84517 3.87238 4.07476 4.18598 4.30456 4.44339 4.57350 4.65303 4.66508 4.69142 4.69394 4.71139 4.72511 4.74457 4.86305 4.93263 5.10217 5.26677 5.41900 5.48434 5.51760 5.94324 6.39314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.454 4.454 2 Si 1.015 2.985 3 C -0.450 4.450 4 C -0.453 4.453 5 C -0.425 4.425 6 C 0.122 3.878 7 N -1.111 6.111 8 S 2.707 3.293 9 O -0.953 6.953 10 O -0.953 6.953 11 C -0.685 4.685 12 C -0.085 4.085 13 S 0.147 5.853 14 C -0.184 4.184 15 C -0.041 4.041 16 O -0.541 6.541 17 Si 0.889 3.111 18 H -0.232 1.232 19 H -0.231 1.231 20 H -0.227 1.227 21 C -0.040 4.040 22 H 0.071 0.929 23 H 0.070 0.930 24 H 0.070 0.930 25 H 0.069 0.931 26 H 0.070 0.930 27 H 0.069 0.931 28 H 0.068 0.932 29 H 0.070 0.930 30 H 0.069 0.931 31 H 0.088 0.912 32 H 0.086 0.914 33 H 0.066 0.934 34 H 0.082 0.918 35 H 0.421 0.579 36 H 0.188 0.812 37 H 0.089 0.911 38 H 0.384 0.616 39 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.168 0.379 -4.112 4.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.562 4.562 2 Si 1.210 2.790 3 C -0.558 4.558 4 C -0.560 4.560 5 C -0.511 4.511 6 C -0.003 4.003 7 N -0.874 5.874 8 S 2.793 3.207 9 O -0.943 6.943 10 O -0.943 6.943 11 C -0.785 4.785 12 C -0.224 4.224 13 S 0.411 5.589 14 C -0.302 4.302 15 C -0.154 4.154 16 O -0.348 6.348 17 Si 0.708 3.292 18 H -0.154 1.154 19 H -0.153 1.153 20 H -0.149 1.149 21 C -0.068 4.068 22 H 0.090 0.910 23 H 0.089 0.911 24 H 0.089 0.911 25 H 0.088 0.912 26 H 0.089 0.911 27 H 0.088 0.912 28 H 0.088 0.912 29 H 0.089 0.911 30 H 0.089 0.911 31 H 0.106 0.894 32 H 0.104 0.896 33 H 0.084 0.916 34 H 0.100 0.900 35 H 0.256 0.744 36 H 0.205 0.795 37 H 0.107 0.893 38 H 0.233 0.767 39 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 0.578 -0.551 -5.528 5.585 hybrid contribution 1.511 0.325 1.158 1.931 sum 2.089 -0.226 -4.370 4.849 Atomic orbital electron populations 1.26188 1.20627 1.04682 1.04685 0.79137 0.67114 0.66977 0.65762 1.26114 1.06289 1.18802 1.04597 1.26180 1.06392 1.08041 1.15435 1.26496 1.06747 1.00752 1.17096 1.21089 0.99601 0.93282 0.86376 1.55618 1.53347 1.38676 1.39711 1.01663 0.73759 0.72397 0.72884 1.93608 1.74151 1.81267 1.45298 1.93605 1.29204 1.85197 1.86316 1.30081 1.05415 1.22930 1.20037 1.25847 1.02145 0.98940 0.95508 1.84428 1.14594 1.35374 1.24533 1.23800 1.00498 1.06141 0.99741 1.23982 0.84434 0.96590 1.10408 1.86505 1.15472 1.36730 1.96084 0.86364 0.84098 0.80940 0.77813 1.15448 1.15311 1.14895 1.19572 0.95482 0.93256 0.98512 0.91029 0.91108 0.91074 0.91215 0.91104 0.91161 0.91238 0.91086 0.91144 0.89357 0.89550 0.91554 0.89958 0.74378 0.79524 0.89293 0.76744 0.82411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.45 1.04 8.65 101.05 0.87 1.92 16 2 Si 1.01 -3.82 12.19 -169.99 -2.07 -5.90 16 3 C -0.45 1.05 8.65 101.05 0.87 1.93 16 4 C -0.45 1.18 8.65 101.05 0.87 2.05 16 5 C -0.43 1.31 4.59 37.16 0.17 1.49 16 6 C 0.12 -0.23 5.59 -4.04 -0.02 -0.26 16 7 N -1.11 0.89 6.00 -10.61 -0.06 0.83 16 8 S 2.71 5.22 5.80 -107.50 -0.62 4.60 16 9 O -0.95 -4.66 17.63 -57.17 -1.01 -5.67 16 10 O -0.95 -4.06 17.12 -57.17 -0.98 -5.04 16 11 C -0.69 -0.91 5.86 -41.21 -0.24 -1.15 16 12 C -0.09 -0.01 10.70 29.04 0.31 0.30 16 13 S 0.15 0.05 20.58 -107.50 -2.21 -2.16 16 14 C -0.18 -0.23 5.75 -36.00 -0.21 -0.44 16 15 C -0.04 0.03 2.95 36.01 0.11 0.13 16 16 O -0.54 0.28 12.83 -35.23 -0.45 -0.17 16 17 Si 0.89 -0.91 26.25 -169.99 -4.46 -5.38 16 18 H -0.23 0.11 7.11 56.52 0.40 0.51 16 19 H -0.23 -0.05 7.11 56.52 0.40 0.35 16 20 H -0.23 0.34 7.11 56.52 0.40 0.74 16 21 C -0.04 -0.07 9.56 -41.21 -0.39 -0.47 16 22 H 0.07 -0.14 7.96 -51.93 -0.41 -0.56 16 23 H 0.07 -0.15 7.96 -51.93 -0.41 -0.56 16 24 H 0.07 -0.17 7.79 -51.93 -0.40 -0.57 16 25 H 0.07 -0.16 7.96 -51.92 -0.41 -0.57 16 26 H 0.07 -0.15 7.96 -51.93 -0.41 -0.56 16 27 H 0.07 -0.15 7.96 -51.93 -0.41 -0.57 16 28 H 0.07 -0.19 7.79 -51.93 -0.40 -0.60 16 29 H 0.07 -0.16 7.96 -51.93 -0.41 -0.58 16 30 H 0.07 -0.17 7.96 -51.93 -0.41 -0.58 16 31 H 0.09 -0.28 7.96 -51.93 -0.41 -0.69 16 32 H 0.09 -0.31 7.96 -51.93 -0.41 -0.73 16 33 H 0.07 -0.22 7.79 -51.93 -0.40 -0.62 16 34 H 0.08 -0.19 7.41 -51.93 -0.38 -0.57 16 35 H 0.42 -0.97 8.65 -34.47 -0.30 -1.27 16 36 H 0.19 -0.44 8.00 -52.49 -0.42 -0.86 16 37 H 0.09 -0.22 7.96 -51.93 -0.41 -0.63 16 38 H 0.38 -1.94 8.74 45.56 0.40 -1.55 16 39 H 0.16 0.21 7.97 -52.49 -0.42 -0.21 16 LS Contribution 354.47 15.07 5.34 5.34 Total: 0.00 -9.26 354.47 -9.45 -18.71 By element: Atomic # 1 Polarization: -5.40 SS G_CDS: -5.27 Total: -10.67 kcal Atomic # 6 Polarization: 3.16 SS G_CDS: 2.35 Total: 5.50 kcal Atomic # 7 Polarization: 0.89 SS G_CDS: -0.06 Total: 0.83 kcal Atomic # 8 Polarization: -8.44 SS G_CDS: -2.44 Total: -10.88 kcal Atomic # 14 Polarization: -4.74 SS G_CDS: -6.53 Total: -11.27 kcal Atomic # 16 Polarization: 5.27 SS G_CDS: -2.84 Total: 2.44 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -9.26 -9.45 -18.71 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_9476126_15065232.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.784 kcal (2) G-P(sol) polarization free energy of solvation -9.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.709 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds