Wall clock time and date at job start Mon Mar 8 2021 15:47:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86301 * 1 3 3 C 1.86292 * 109.47300 * 2 1 4 4 C 1.86304 * 109.46900 * 239.99763 * 2 1 3 5 5 C 1.86306 * 109.46910 * 119.99890 * 2 1 3 6 6 C 1.53004 * 109.47116 * 59.99746 * 5 2 1 7 7 N 1.46499 * 109.47094 * 179.97438 * 6 5 2 8 8 S 1.65597 * 119.99926 * 165.27799 * 7 6 5 9 9 O 1.42096 * 106.40195 * 178.26439 * 8 7 6 10 10 O 1.42108 * 106.40105 * 311.18495 * 8 7 6 11 11 C 1.76199 * 107.22117 * 64.72196 * 8 7 6 12 12 C 1.33390 * 122.54075 * 269.71156 * 11 8 7 13 13 S 1.75890 * 109.59293 * 179.90130 * 12 11 8 14 14 C 1.75878 * 90.97067 * 0.30204 * 13 12 11 15 15 C 1.50703 * 125.20287 * 179.78823 * 14 13 12 16 16 O 1.42900 * 109.46570 * 120.04397 * 15 14 13 17 17 Si 1.86298 * 109.46912 * 0.04645 * 15 14 13 18 18 H 1.48496 * 109.47026 * 299.99369 * 17 15 14 19 19 H 1.48497 * 109.47343 * 59.99640 * 17 15 14 20 20 H 1.48507 * 109.46942 * 179.97438 * 17 15 14 21 21 C 1.33389 * 109.59513 * 359.82969 * 14 13 12 22 22 H 1.09007 * 109.46954 * 300.00116 * 1 2 3 23 23 H 1.09000 * 109.46760 * 59.99409 * 1 2 3 24 24 H 1.08998 * 109.47609 * 180.02562 * 1 2 3 25 25 H 1.09009 * 109.46892 * 179.97438 * 3 2 1 26 26 H 1.09000 * 109.47565 * 299.99477 * 3 2 1 27 27 H 1.08998 * 109.47251 * 60.00269 * 3 2 1 28 28 H 1.08998 * 109.46961 * 300.00362 * 4 2 1 29 29 H 1.08996 * 109.46932 * 60.00078 * 4 2 1 30 30 H 1.09002 * 109.46595 * 180.02562 * 4 2 1 31 31 H 1.08994 * 109.47259 * 300.00090 * 5 2 1 32 32 H 1.09002 * 109.47093 * 179.97438 * 5 2 1 33 33 H 1.09007 * 109.47007 * 59.99848 * 6 5 2 34 34 H 1.08995 * 109.47080 * 300.00091 * 6 5 2 35 35 H 0.97001 * 119.99790 * 344.99588 * 7 6 5 36 36 H 1.08001 * 125.20245 * 0.02562 * 12 11 8 37 37 H 1.09001 * 109.47307 * 240.04203 * 15 14 13 38 38 H 0.96708 * 113.99996 * 180.02562 * 16 15 14 39 39 H 1.07999 * 122.53888 * 180.02562 * 21 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4840 1.7564 0.0000 4 6 2.4840 -0.8783 -1.5212 5 6 2.4840 -0.8782 1.5212 6 6 1.9739 -2.3207 1.5213 7 7 2.4627 -3.0115 2.7171 8 16 1.7873 -4.4525 3.1751 9 8 2.4971 -4.8792 4.3298 10 8 0.3795 -4.2602 3.1550 11 6 2.1476 -5.6233 1.9086 12 6 1.3389 -5.8256 0.8673 13 16 2.0256 -7.0588 -0.1820 14 6 3.4088 -7.2421 0.8887 15 6 4.5543 -8.1973 0.6724 16 8 5.7758 -7.4619 0.5765 17 14 4.2783 -9.1511 -0.9039 18 1 3.0089 -9.9152 -0.8042 19 1 4.1990 -8.2064 -2.0468 20 1 5.4074 -10.0919 -1.1173 21 6 3.2885 -6.4071 1.9219 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5139 -0.8899 24 1 -0.3634 -1.0276 0.0005 25 1 3.5741 1.7563 0.0005 26 1 2.1208 2.2702 -0.8900 27 1 2.1208 2.2702 0.8900 28 1 2.1205 -1.9059 -1.5211 29 1 2.1206 -0.3645 -2.4111 30 1 3.5740 -0.8787 -1.5209 31 1 2.1206 -0.3644 2.4111 32 1 3.5740 -0.8787 1.5210 33 1 2.3372 -2.8346 0.6312 34 1 0.8839 -2.3207 1.5212 35 1 3.1846 -2.6268 3.2384 36 1 0.4061 -5.3095 0.6940 37 1 4.6125 -8.8907 1.5114 38 1 6.5573 -8.0141 0.4363 39 1 4.0256 -6.3468 2.7089 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_9476126_15065232.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 15:47:34 Heat of formation + Delta-G solvation = -121.068315 kcal Electronic energy + Delta-G solvation = -21283.470039 eV Core-core repulsion = 17989.207030 eV Total energy + Delta-G solvation = -3294.263008 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 323.064 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.40635 -38.42095 -37.54503 -37.02875 -36.75980 -31.97585 -30.63644 -29.15145 -28.27267 -28.25584 -27.21766 -24.87203 -23.50268 -21.24629 -20.22333 -19.05568 -18.57011 -18.40915 -17.83025 -17.15166 -16.43478 -15.89238 -15.74923 -15.51360 -14.89398 -14.45149 -14.27447 -14.17729 -14.07749 -14.00920 -13.86178 -13.70947 -13.34292 -13.29735 -13.20879 -13.17176 -13.11180 -12.94356 -12.87123 -12.72298 -12.67564 -12.44670 -12.43523 -12.15723 -11.64462 -10.72040 -10.66266 -10.63367 -10.55497 -10.42550 -10.11415 -9.84834 -0.78488 -0.49814 0.25666 0.53524 0.95494 1.05960 1.38088 1.40491 1.81598 1.83813 2.02008 2.06247 2.20826 2.66647 2.77501 3.20328 3.42300 3.74646 3.91213 4.04934 4.18256 4.31591 4.41755 4.61498 4.65378 4.75419 4.85909 4.85996 4.89140 4.90185 4.91994 4.92025 4.92845 5.04385 5.10370 5.51067 5.63411 5.70374 5.72609 6.07506 6.73093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.474 4.474 2 Si 1.088 2.912 3 C -0.468 4.468 4 C -0.469 4.469 5 C -0.433 4.433 6 C 0.105 3.895 7 N -1.103 6.103 8 S 2.722 3.278 9 O -0.988 6.988 10 O -0.980 6.980 11 C -0.692 4.692 12 C -0.083 4.083 13 S 0.154 5.846 14 C -0.197 4.197 15 C -0.044 4.044 16 O -0.558 6.558 17 Si 0.912 3.088 18 H -0.241 1.241 19 H -0.251 1.251 20 H -0.216 1.216 21 C -0.056 4.056 22 H 0.067 0.933 23 H 0.067 0.933 24 H 0.072 0.928 25 H 0.069 0.931 26 H 0.066 0.934 27 H 0.067 0.933 28 H 0.072 0.928 29 H 0.067 0.933 30 H 0.069 0.931 31 H 0.090 0.910 32 H 0.095 0.905 33 H 0.082 0.918 34 H 0.086 0.914 35 H 0.428 0.572 36 H 0.210 0.790 37 H 0.107 0.893 38 H 0.403 0.597 39 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.566 0.222 -4.697 5.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.580 4.580 2 Si 1.279 2.721 3 C -0.574 4.574 4 C -0.575 4.575 5 C -0.518 4.518 6 C -0.020 4.020 7 N -0.868 5.868 8 S 2.810 3.190 9 O -0.978 6.978 10 O -0.970 6.970 11 C -0.793 4.793 12 C -0.222 4.222 13 S 0.418 5.582 14 C -0.314 4.314 15 C -0.157 4.157 16 O -0.368 6.368 17 Si 0.732 3.268 18 H -0.164 1.164 19 H -0.174 1.174 20 H -0.138 1.138 21 C -0.084 4.084 22 H 0.086 0.914 23 H 0.086 0.914 24 H 0.091 0.909 25 H 0.088 0.912 26 H 0.085 0.915 27 H 0.087 0.913 28 H 0.091 0.909 29 H 0.086 0.914 30 H 0.088 0.912 31 H 0.109 0.891 32 H 0.113 0.887 33 H 0.100 0.900 34 H 0.104 0.896 35 H 0.265 0.735 36 H 0.226 0.774 37 H 0.124 0.876 38 H 0.254 0.746 39 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 0.992 -0.703 -6.096 6.216 hybrid contribution 1.397 0.400 1.272 1.931 sum 2.389 -0.303 -4.824 5.391 Atomic orbital electron populations 1.26431 1.22470 1.04694 1.04386 0.77997 0.64905 0.64971 0.64235 1.26338 1.06458 1.20296 1.04339 1.26367 1.06491 1.08533 1.16122 1.26628 1.07471 0.99955 1.17712 1.21415 1.00142 0.94046 0.86358 1.55419 1.53455 1.37622 1.40284 1.00914 0.72951 0.72677 0.72444 1.93554 1.74634 1.82156 1.47491 1.93565 1.30868 1.85742 1.86796 1.29919 1.05850 1.23230 1.20256 1.26176 1.02586 0.98580 0.94837 1.84403 1.14296 1.35255 1.24278 1.24145 1.01343 1.06277 0.99664 1.24086 0.83990 0.96251 1.11341 1.86457 1.16269 1.37881 1.96173 0.86050 0.83917 0.80226 0.76633 1.16428 1.17443 1.13783 1.19669 0.95857 0.93960 0.98929 0.91391 0.91376 0.90927 0.91196 0.91472 0.91345 0.90883 0.91410 0.91192 0.89140 0.88658 0.89983 0.89609 0.73492 0.77356 0.87559 0.74616 0.82623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.47 2.21 8.65 113.37 0.98 3.19 16 2 Si 1.09 -8.75 12.19 68.60 0.84 -7.92 16 3 C -0.47 2.25 8.65 113.37 0.98 3.23 16 4 C -0.47 2.70 8.65 113.37 0.98 3.68 16 5 C -0.43 3.01 4.59 71.98 0.33 3.34 16 6 C 0.11 -0.46 5.59 86.38 0.48 0.02 16 7 N -1.10 1.68 6.00 -187.48 -1.12 0.56 16 8 S 2.72 12.48 5.80 -56.49 -0.33 12.15 16 9 O -0.99 -10.95 17.63 -128.00 -2.26 -13.21 16 10 O -0.98 -8.97 17.12 -128.00 -2.19 -11.16 16 11 C -0.69 -2.08 5.86 21.22 0.12 -1.95 16 12 C -0.08 0.00 10.70 66.72 0.71 0.71 16 13 S 0.15 0.09 20.58 -56.49 -1.16 -1.07 16 14 C -0.20 -0.52 5.75 24.59 0.14 -0.38 16 15 C -0.04 0.07 2.95 71.24 0.21 0.28 16 16 O -0.56 0.80 12.83 -148.98 -1.91 -1.11 16 17 Si 0.91 -2.19 26.25 68.60 1.80 -0.39 16 18 H -0.24 0.25 7.11 99.48 0.71 0.96 16 19 H -0.25 -0.19 7.11 99.48 0.71 0.52 16 20 H -0.22 0.90 7.11 99.48 0.71 1.61 16 21 C -0.06 -0.23 9.56 21.22 0.20 -0.03 16 22 H 0.07 -0.26 7.96 -2.38 -0.02 -0.28 16 23 H 0.07 -0.28 7.96 -2.39 -0.02 -0.30 16 24 H 0.07 -0.36 7.79 -2.39 -0.02 -0.38 16 25 H 0.07 -0.33 7.96 -2.38 -0.02 -0.35 16 26 H 0.07 -0.26 7.96 -2.39 -0.02 -0.28 16 27 H 0.07 -0.30 7.96 -2.39 -0.02 -0.32 16 28 H 0.07 -0.46 7.79 -2.39 -0.02 -0.48 16 29 H 0.07 -0.33 7.96 -2.39 -0.02 -0.35 16 30 H 0.07 -0.38 7.96 -2.39 -0.02 -0.39 16 31 H 0.09 -0.63 7.96 -2.39 -0.02 -0.65 16 32 H 0.09 -0.80 7.96 -2.39 -0.02 -0.82 16 33 H 0.08 -0.62 7.79 -2.38 -0.02 -0.64 16 34 H 0.09 -0.43 7.41 -2.39 -0.02 -0.45 16 35 H 0.43 -1.93 8.65 -96.74 -0.84 -2.76 16 36 H 0.21 -1.12 8.00 -2.91 -0.02 -1.14 16 37 H 0.11 -0.59 7.96 -2.39 -0.02 -0.61 16 38 H 0.40 -4.35 8.74 -74.05 -0.65 -4.99 16 39 H 0.16 0.58 7.97 -2.91 -0.02 0.56 16 Total: 0.00 -20.75 354.47 -0.86 -21.61 By element: Atomic # 1 Polarization: -11.88 SS G_CDS: 0.33 Total: -11.55 kcal Atomic # 6 Polarization: 6.94 SS G_CDS: 5.15 Total: 12.09 kcal Atomic # 7 Polarization: 1.68 SS G_CDS: -1.12 Total: 0.56 kcal Atomic # 8 Polarization: -19.12 SS G_CDS: -6.36 Total: -25.48 kcal Atomic # 14 Polarization: -10.94 SS G_CDS: 2.64 Total: -8.30 kcal Atomic # 16 Polarization: 12.57 SS G_CDS: -1.49 Total: 11.08 kcal Total: -20.75 -0.86 -21.61 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_9476126_15065232.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.458 kcal (2) G-P(sol) polarization free energy of solvation -20.749 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.611 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds