Wall clock time and date at job start Mon Mar 8 2021 15:47:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.33392 * 125.20409 * 2 1 4 4 C 1.50694 * 122.53902 * 359.97438 * 3 2 1 5 5 O 1.42902 * 109.47073 * 66.69835 * 4 3 2 6 6 Si 1.86300 * 109.47149 * 306.69545 * 4 3 2 7 7 H 1.48496 * 109.47116 * 188.48677 * 6 4 3 8 8 H 1.48501 * 109.47091 * 308.48679 * 6 4 3 9 9 H 1.48497 * 109.46885 * 68.48954 * 6 4 3 10 10 C 1.38426 * 114.91922 * 180.24489 * 3 2 1 11 11 S 1.76201 * 122.53686 * 179.73240 * 10 3 2 12 12 O 1.42105 * 106.40288 * 191.63790 * 11 10 3 13 13 O 1.42099 * 106.40448 * 324.55473 * 11 10 3 14 14 N 1.65601 * 107.21846 * 78.09892 * 11 10 3 15 15 C 1.46493 * 119.99862 * 64.99666 * 14 11 10 16 16 C 1.53003 * 109.46997 * 164.99920 * 15 14 11 17 17 Si 1.86304 * 109.47333 * 179.97438 * 16 15 14 18 18 C 1.86297 * 109.46652 * 60.00155 * 17 16 15 19 19 C 1.86291 * 109.47305 * 180.02562 * 17 16 15 20 20 C 1.86300 * 109.47029 * 300.00541 * 17 16 15 21 21 C 1.33390 * 114.92032 * 359.50455 * 10 3 2 22 22 C 1.50699 * 125.19980 * 180.20768 * 21 10 3 23 23 S 1.75881 * 109.59596 * 0.46926 * 21 10 3 24 24 H 1.08999 * 109.46720 * 86.94335 * 1 2 3 25 25 H 1.08996 * 109.46933 * 206.94547 * 1 2 3 26 26 H 1.08996 * 109.46759 * 326.94991 * 1 2 3 27 27 H 1.09002 * 109.47319 * 186.69468 * 4 3 2 28 28 H 0.96703 * 113.99788 * 293.67178 * 5 4 3 29 29 H 0.96996 * 119.99552 * 244.99631 * 14 11 10 30 30 H 1.08997 * 109.47515 * 284.99669 * 15 14 11 31 31 H 1.09001 * 109.47597 * 45.00566 * 15 14 11 32 32 H 1.09000 * 109.47408 * 300.00589 * 16 15 14 33 33 H 1.09000 * 109.47095 * 60.00253 * 16 15 14 34 34 H 1.08998 * 109.47379 * 60.00502 * 18 17 16 35 35 H 1.09010 * 109.46989 * 179.97438 * 18 17 16 36 36 H 1.08994 * 109.47593 * 300.00069 * 18 17 16 37 37 H 1.09001 * 109.47066 * 59.99793 * 19 17 16 38 38 H 1.08998 * 109.47691 * 180.02562 * 19 17 16 39 39 H 1.09000 * 109.47282 * 300.00632 * 19 17 16 40 40 H 1.08994 * 109.47192 * 59.99945 * 20 17 16 41 41 H 1.08997 * 109.47106 * 179.97438 * 20 17 16 42 42 H 1.09000 * 109.47059 * 299.99401 * 20 17 16 43 43 H 1.09009 * 109.47009 * 180.33291 * 22 21 10 44 44 H 1.09000 * 109.47271 * 300.32634 * 22 21 10 45 45 H 1.08994 * 109.47460 * 60.32825 * 22 21 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2760 1.0900 0.0000 4 6 1.7052 2.4846 -0.0006 5 8 1.0311 2.7239 1.2365 6 14 0.4991 2.6615 -1.4094 7 1 0.0927 4.0840 -1.5375 8 1 1.1428 2.2150 -2.6710 9 1 -0.6994 1.8263 -1.1426 10 6 3.6380 0.8428 -0.0054 11 16 4.8357 2.1352 -0.0133 12 8 6.0865 1.5214 -0.2924 13 8 4.2905 3.1827 -0.8037 14 7 4.9363 2.7198 1.5328 15 6 5.4355 1.8610 2.6095 16 6 5.7808 2.7195 3.8280 17 14 6.4150 1.6273 5.1977 18 6 7.9407 0.7285 4.6189 19 6 6.8346 2.6725 6.6816 20 6 5.1032 0.3887 5.6621 21 6 3.9751 -0.4478 0.0007 22 6 5.3861 -0.9771 0.0013 23 16 2.5210 -1.4372 0.0005 24 1 -0.3633 0.0548 -1.0262 25 1 -0.3633 -0.9161 0.4657 26 1 -0.3633 0.8614 0.5605 27 1 2.5123 3.2075 -0.1203 28 1 0.2413 2.1810 1.3655 29 1 4.6646 3.6308 1.7254 30 1 4.6684 1.1361 2.8815 31 1 6.3284 1.3354 2.2708 32 1 6.5479 3.4445 3.5562 33 1 4.8880 3.2451 4.1669 34 1 8.7083 1.4531 4.3472 35 1 8.3121 0.0897 5.4204 36 1 7.6949 0.1169 3.7509 37 1 5.9417 3.1982 7.0199 38 1 7.2061 2.0336 7.4827 39 1 7.6019 3.3975 6.4101 40 1 4.8573 -0.2229 4.7941 41 1 5.4744 -0.2506 6.4631 42 1 4.2105 0.9146 6.0007 43 1 5.3653 -2.0670 0.0009 44 1 5.9072 -0.6235 -0.8884 45 1 5.9063 -0.6239 0.8915 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_9476126_15065288.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 15:47:44 Heat of formation + Delta-G solvation = -117.533211 kcal Electronic energy + Delta-G solvation = -26447.359098 eV Core-core repulsion = 22842.174145 eV Total energy + Delta-G solvation = -3605.184953 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 351.095 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.35750 -38.44348 -37.21883 -36.88259 -36.79887 -34.25557 -31.10176 -30.73288 -29.34680 -28.48802 -28.47259 -28.03650 -25.97165 -23.69402 -23.16629 -20.83632 -20.12679 -18.95467 -18.46699 -18.02225 -17.18370 -17.10548 -16.29177 -16.07979 -15.76791 -15.62812 -15.26560 -14.93181 -14.50777 -14.47577 -14.35517 -14.21497 -14.14707 -14.07047 -13.92186 -13.66081 -13.55572 -13.36778 -13.31285 -13.26976 -13.18624 -13.14594 -13.03920 -12.83552 -12.76502 -12.58357 -12.56464 -12.15467 -11.96953 -11.62860 -11.18985 -10.91318 -10.87007 -10.82756 -10.65320 -10.49479 -9.98390 -9.45273 -0.67230 -0.42416 0.38274 0.70809 0.81104 1.23204 1.38942 1.59156 1.63110 1.77455 1.80495 1.99099 2.15471 2.56092 2.73627 3.30370 3.42264 3.49472 3.69057 3.89324 3.95600 4.02361 4.10576 4.21902 4.30492 4.41120 4.48643 4.54716 4.56348 4.65970 4.66431 4.68194 4.70034 4.71375 4.72382 4.73208 4.77731 4.89420 4.97494 5.08798 5.20731 5.29771 5.42778 5.49257 5.51573 5.97549 6.44729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C -0.196 4.196 3 C -0.059 4.059 4 C -0.101 4.101 5 O -0.527 6.527 6 Si 0.938 3.062 7 H -0.245 1.245 8 H -0.245 1.245 9 H -0.235 1.235 10 C -0.683 4.683 11 S 2.703 3.297 12 O -0.951 6.951 13 O -0.955 6.955 14 N -1.108 6.108 15 C 0.126 3.874 16 C -0.425 4.425 17 Si 1.013 2.987 18 C -0.454 4.454 19 C -0.450 4.450 20 C -0.453 4.453 21 C -0.050 4.050 22 C -0.111 4.111 23 S 0.162 5.838 24 H 0.086 0.914 25 H 0.080 0.920 26 H 0.077 0.923 27 H 0.144 0.856 28 H 0.368 0.632 29 H 0.421 0.579 30 H 0.066 0.934 31 H 0.080 0.920 32 H 0.087 0.913 33 H 0.087 0.913 34 H 0.071 0.929 35 H 0.070 0.930 36 H 0.070 0.930 37 H 0.069 0.931 38 H 0.070 0.930 39 H 0.069 0.931 40 H 0.068 0.932 41 H 0.070 0.930 42 H 0.070 0.930 43 H 0.078 0.922 44 H 0.110 0.890 45 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.440 -2.901 3.661 4.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.314 4.314 3 C -0.070 4.070 4 C -0.212 4.212 5 O -0.334 6.334 6 Si 0.757 3.243 7 H -0.168 1.168 8 H -0.168 1.168 9 H -0.158 1.158 10 C -0.782 4.782 11 S 2.790 3.210 12 O -0.941 6.941 13 O -0.945 6.945 14 N -0.870 5.870 15 C 0.000 4.000 16 C -0.511 4.511 17 Si 1.209 2.791 18 C -0.561 4.561 19 C -0.558 4.558 20 C -0.560 4.560 21 C -0.171 4.171 22 C -0.170 4.170 23 S 0.429 5.571 24 H 0.104 0.896 25 H 0.099 0.901 26 H 0.095 0.905 27 H 0.161 0.839 28 H 0.216 0.784 29 H 0.257 0.743 30 H 0.084 0.916 31 H 0.098 0.902 32 H 0.106 0.894 33 H 0.106 0.894 34 H 0.090 0.910 35 H 0.089 0.911 36 H 0.089 0.911 37 H 0.088 0.912 38 H 0.089 0.911 39 H 0.088 0.912 40 H 0.087 0.913 41 H 0.089 0.911 42 H 0.089 0.911 43 H 0.097 0.903 44 H 0.128 0.872 45 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -1.349 -3.891 2.280 4.707 hybrid contribution -0.527 0.862 0.705 1.232 sum -1.876 -3.029 2.985 4.648 Atomic orbital electron populations 1.20821 0.87384 1.03722 1.03618 1.24323 1.00096 0.95413 1.11592 1.18492 0.90640 0.96680 1.01141 1.25388 1.04673 0.94409 0.96777 1.86612 1.43985 1.65437 1.37340 0.86007 0.78626 0.82161 0.77479 1.16786 1.16809 1.15787 1.29511 1.11890 1.13402 1.23384 1.01663 0.73551 0.73154 0.72597 1.93591 1.39711 1.77679 1.83091 1.93511 1.79453 1.54639 1.66891 1.55540 1.81100 1.24087 1.26309 1.21050 0.98878 0.92874 0.87148 1.26498 1.07349 1.09104 1.08128 0.79155 0.67067 0.66591 0.66296 1.26183 1.15456 1.08387 1.06117 1.26111 1.05363 1.09616 1.14702 1.26174 1.12609 1.11676 1.05541 1.24647 1.00783 0.94980 0.96663 1.20951 0.88104 1.01719 1.06204 1.84352 0.95118 1.08248 1.69431 0.89559 0.90119 0.90478 0.83892 0.78385 0.74333 0.91621 0.90159 0.89395 0.89449 0.91014 0.91103 0.91098 0.91187 0.91114 0.91154 0.91275 0.91119 0.91128 0.90305 0.87212 0.88680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 0.17 8.06 36.01 0.29 0.46 16 2 C -0.20 -0.11 6.08 -36.00 -0.22 -0.33 16 3 C -0.06 -0.11 4.53 -106.25 -0.48 -0.59 16 4 C -0.10 -0.19 2.62 36.00 0.09 -0.10 16 5 O -0.53 -0.44 12.95 -35.23 -0.46 -0.90 16 6 Si 0.94 1.26 25.34 -169.99 -4.31 -3.04 16 7 H -0.24 -0.56 7.11 56.52 0.40 -0.16 16 8 H -0.25 -0.69 7.11 56.52 0.40 -0.29 16 9 H -0.23 0.25 4.89 56.52 0.28 0.52 16 10 C -0.68 -1.38 5.84 -41.21 -0.24 -1.62 16 11 S 2.70 6.72 5.38 -107.50 -0.58 6.14 16 12 O -0.95 -3.54 14.14 -57.17 -0.81 -4.35 16 13 O -0.95 -4.58 15.12 -57.17 -0.86 -5.44 16 14 N -1.11 0.11 6.00 -10.62 -0.06 0.04 16 15 C 0.13 -0.18 5.60 -4.04 -0.02 -0.21 16 16 C -0.43 1.16 4.59 37.16 0.17 1.33 16 17 Si 1.01 -3.62 12.19 -169.99 -2.07 -5.69 16 18 C -0.45 1.05 8.65 101.05 0.87 1.92 16 19 C -0.45 0.99 8.65 101.05 0.87 1.86 16 20 C -0.45 1.09 8.65 101.05 0.87 1.97 16 21 C -0.05 -0.04 6.50 -36.00 -0.23 -0.28 16 22 C -0.11 0.07 8.63 36.01 0.31 0.38 16 23 S 0.16 0.00 23.31 -107.50 -2.51 -2.51 16 24 H 0.09 -0.17 6.42 -51.93 -0.33 -0.50 16 25 H 0.08 -0.24 8.14 -51.93 -0.42 -0.66 16 26 H 0.08 -0.25 4.34 -51.93 -0.23 -0.47 16 27 H 0.14 0.39 4.49 -51.93 -0.23 0.15 16 28 H 0.37 -0.88 6.10 45.56 0.28 -0.60 16 29 H 0.42 -0.60 8.65 -34.47 -0.30 -0.89 16 30 H 0.07 -0.16 7.79 -51.93 -0.40 -0.57 16 31 H 0.08 -0.17 7.40 -51.93 -0.38 -0.55 16 32 H 0.09 -0.25 7.96 -51.93 -0.41 -0.67 16 33 H 0.09 -0.27 7.96 -51.93 -0.41 -0.68 16 34 H 0.07 -0.15 7.96 -51.93 -0.41 -0.56 16 35 H 0.07 -0.15 7.96 -51.92 -0.41 -0.57 16 36 H 0.07 -0.17 7.79 -51.93 -0.40 -0.58 16 37 H 0.07 -0.14 7.96 -51.93 -0.41 -0.56 16 38 H 0.07 -0.14 7.96 -51.93 -0.41 -0.55 16 39 H 0.07 -0.14 7.96 -51.93 -0.41 -0.56 16 40 H 0.07 -0.17 7.79 -51.93 -0.40 -0.58 16 41 H 0.07 -0.16 7.96 -51.93 -0.41 -0.57 16 42 H 0.07 -0.15 7.96 -51.93 -0.41 -0.57 16 43 H 0.08 -0.19 8.14 -51.92 -0.42 -0.62 16 44 H 0.11 0.02 7.05 -51.93 -0.37 -0.35 16 45 H 0.09 -0.16 7.83 -51.93 -0.41 -0.57 16 LS Contribution 375.57 15.07 5.66 5.66 Total: 0.00 -6.92 375.57 -10.38 -17.29 By element: Atomic # 1 Polarization: -5.32 SS G_CDS: -6.67 Total: -11.99 kcal Atomic # 6 Polarization: 2.51 SS G_CDS: 2.29 Total: 4.80 kcal Atomic # 7 Polarization: 0.11 SS G_CDS: -0.06 Total: 0.04 kcal Atomic # 8 Polarization: -8.56 SS G_CDS: -2.13 Total: -10.69 kcal Atomic # 14 Polarization: -2.36 SS G_CDS: -6.38 Total: -8.74 kcal Atomic # 16 Polarization: 6.72 SS G_CDS: -3.08 Total: 3.63 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -6.92 -10.38 -17.29 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_9476126_15065288.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.239 kcal (2) G-P(sol) polarization free energy of solvation -6.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.295 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds