Wall clock time and date at job start Mon Mar 8 2021 15:47:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.33392 * 125.20409 * 2 1 4 4 C 1.50694 * 122.53902 * 359.97438 * 3 2 1 5 5 O 1.42902 * 109.47073 * 66.69835 * 4 3 2 6 6 Si 1.86300 * 109.47149 * 306.69545 * 4 3 2 7 7 H 1.48496 * 109.47116 * 188.48677 * 6 4 3 8 8 H 1.48501 * 109.47091 * 308.48679 * 6 4 3 9 9 H 1.48497 * 109.46885 * 68.48954 * 6 4 3 10 10 C 1.38426 * 114.91922 * 180.24489 * 3 2 1 11 11 S 1.76201 * 122.53686 * 179.73240 * 10 3 2 12 12 O 1.42105 * 106.40288 * 191.63790 * 11 10 3 13 13 O 1.42099 * 106.40448 * 324.55473 * 11 10 3 14 14 N 1.65601 * 107.21846 * 78.09892 * 11 10 3 15 15 C 1.46493 * 119.99862 * 64.99666 * 14 11 10 16 16 C 1.53003 * 109.46997 * 164.99920 * 15 14 11 17 17 Si 1.86304 * 109.47333 * 179.97438 * 16 15 14 18 18 C 1.86297 * 109.46652 * 60.00155 * 17 16 15 19 19 C 1.86291 * 109.47305 * 180.02562 * 17 16 15 20 20 C 1.86300 * 109.47029 * 300.00541 * 17 16 15 21 21 C 1.33390 * 114.92032 * 359.50455 * 10 3 2 22 22 C 1.50699 * 125.19980 * 180.20768 * 21 10 3 23 23 S 1.75881 * 109.59596 * 0.46926 * 21 10 3 24 24 H 1.08999 * 109.46720 * 86.94335 * 1 2 3 25 25 H 1.08996 * 109.46933 * 206.94547 * 1 2 3 26 26 H 1.08996 * 109.46759 * 326.94991 * 1 2 3 27 27 H 1.09002 * 109.47319 * 186.69468 * 4 3 2 28 28 H 0.96703 * 113.99788 * 293.67178 * 5 4 3 29 29 H 0.96996 * 119.99552 * 244.99631 * 14 11 10 30 30 H 1.08997 * 109.47515 * 284.99669 * 15 14 11 31 31 H 1.09001 * 109.47597 * 45.00566 * 15 14 11 32 32 H 1.09000 * 109.47408 * 300.00589 * 16 15 14 33 33 H 1.09000 * 109.47095 * 60.00253 * 16 15 14 34 34 H 1.08998 * 109.47379 * 60.00502 * 18 17 16 35 35 H 1.09010 * 109.46989 * 179.97438 * 18 17 16 36 36 H 1.08994 * 109.47593 * 300.00069 * 18 17 16 37 37 H 1.09001 * 109.47066 * 59.99793 * 19 17 16 38 38 H 1.08998 * 109.47691 * 180.02562 * 19 17 16 39 39 H 1.09000 * 109.47282 * 300.00632 * 19 17 16 40 40 H 1.08994 * 109.47192 * 59.99945 * 20 17 16 41 41 H 1.08997 * 109.47106 * 179.97438 * 20 17 16 42 42 H 1.09000 * 109.47059 * 299.99401 * 20 17 16 43 43 H 1.09009 * 109.47009 * 180.33291 * 22 21 10 44 44 H 1.09000 * 109.47271 * 300.32634 * 22 21 10 45 45 H 1.08994 * 109.47460 * 60.32825 * 22 21 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2760 1.0900 0.0000 4 6 1.7052 2.4846 -0.0006 5 8 1.0311 2.7239 1.2365 6 14 0.4991 2.6615 -1.4094 7 1 0.0927 4.0840 -1.5375 8 1 1.1428 2.2150 -2.6710 9 1 -0.6994 1.8263 -1.1426 10 6 3.6380 0.8428 -0.0054 11 16 4.8357 2.1352 -0.0133 12 8 6.0865 1.5214 -0.2924 13 8 4.2905 3.1827 -0.8037 14 7 4.9363 2.7198 1.5328 15 6 5.4355 1.8610 2.6095 16 6 5.7808 2.7195 3.8280 17 14 6.4150 1.6273 5.1977 18 6 7.9407 0.7285 4.6189 19 6 6.8346 2.6725 6.6816 20 6 5.1032 0.3887 5.6621 21 6 3.9751 -0.4478 0.0007 22 6 5.3861 -0.9771 0.0013 23 16 2.5210 -1.4372 0.0005 24 1 -0.3633 0.0548 -1.0262 25 1 -0.3633 -0.9161 0.4657 26 1 -0.3633 0.8614 0.5605 27 1 2.5123 3.2075 -0.1203 28 1 0.2413 2.1810 1.3655 29 1 4.6646 3.6308 1.7254 30 1 4.6684 1.1361 2.8815 31 1 6.3284 1.3354 2.2708 32 1 6.5479 3.4445 3.5562 33 1 4.8880 3.2451 4.1669 34 1 8.7083 1.4531 4.3472 35 1 8.3121 0.0897 5.4204 36 1 7.6949 0.1169 3.7509 37 1 5.9417 3.1982 7.0199 38 1 7.2061 2.0336 7.4827 39 1 7.6019 3.3975 6.4101 40 1 4.8573 -0.2229 4.7941 41 1 5.4744 -0.2506 6.4631 42 1 4.2105 0.9146 6.0007 43 1 5.3653 -2.0670 0.0009 44 1 5.9072 -0.6235 -0.8884 45 1 5.9063 -0.6239 0.8915 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_9476126_15065288.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 15:47:43 Heat of formation + Delta-G solvation = -114.401626 kcal Electronic energy + Delta-G solvation = -26447.223302 eV Core-core repulsion = 22842.174145 eV Total energy + Delta-G solvation = -3605.049157 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 351.095 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.38176 -38.64429 -37.27735 -37.06749 -36.77592 -34.21351 -31.02203 -30.61323 -29.15708 -28.27837 -28.26075 -28.06301 -25.94997 -23.56432 -23.18838 -20.89644 -20.20115 -19.00099 -18.55726 -18.07885 -17.23772 -17.13077 -16.28999 -16.08387 -15.73333 -15.65593 -15.27118 -14.96546 -14.48614 -14.40398 -14.30226 -14.08783 -14.02154 -13.88014 -13.71817 -13.59845 -13.59599 -13.34794 -13.25810 -13.17349 -13.12338 -13.07455 -12.94908 -12.82143 -12.74551 -12.61140 -12.42416 -12.32005 -12.03020 -11.68161 -11.17186 -10.73072 -10.70304 -10.66549 -10.63066 -10.42605 -9.97935 -9.45702 -0.77892 -0.46078 0.39188 0.68764 0.74057 1.14357 1.28768 1.46789 1.80214 1.89834 2.01287 2.05947 2.16933 2.59489 2.76462 3.20960 3.45143 3.49878 3.69978 3.98692 4.02707 4.11472 4.25631 4.29550 4.49995 4.53534 4.54419 4.64122 4.67451 4.77149 4.85572 4.85723 4.88143 4.89868 4.91542 4.91973 4.92654 4.95967 5.09087 5.14729 5.22729 5.50560 5.62877 5.69792 5.72190 6.04618 6.58624 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.197 4.197 3 C -0.079 4.079 4 C -0.102 4.102 5 O -0.534 6.534 6 Si 0.943 3.057 7 H -0.264 1.264 8 H -0.273 1.273 9 H -0.190 1.190 10 C -0.695 4.695 11 S 2.706 3.294 12 O -0.970 6.970 13 O -0.986 6.986 14 N -1.102 6.102 15 C 0.112 3.888 16 C -0.434 4.434 17 Si 1.085 2.915 18 C -0.472 4.472 19 C -0.468 4.468 20 C -0.467 4.467 21 C -0.057 4.057 22 C -0.118 4.118 23 S 0.188 5.812 24 H 0.091 0.909 25 H 0.096 0.904 26 H 0.092 0.908 27 H 0.129 0.871 28 H 0.382 0.618 29 H 0.426 0.574 30 H 0.077 0.923 31 H 0.085 0.915 32 H 0.089 0.911 33 H 0.092 0.908 34 H 0.067 0.933 35 H 0.068 0.932 36 H 0.072 0.928 37 H 0.068 0.932 38 H 0.067 0.933 39 H 0.068 0.932 40 H 0.071 0.929 41 H 0.068 0.932 42 H 0.068 0.932 43 H 0.098 0.902 44 H 0.099 0.901 45 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.484 -4.061 4.570 6.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.315 4.315 3 C -0.089 4.089 4 C -0.214 4.214 5 O -0.342 6.342 6 Si 0.763 3.237 7 H -0.189 1.189 8 H -0.198 1.198 9 H -0.111 1.111 10 C -0.796 4.796 11 S 2.796 3.204 12 O -0.959 6.959 13 O -0.976 6.976 14 N -0.866 5.866 15 C -0.013 4.013 16 C -0.518 4.518 17 Si 1.276 2.724 18 C -0.578 4.578 19 C -0.574 4.574 20 C -0.573 4.573 21 C -0.178 4.178 22 C -0.176 4.176 23 S 0.454 5.546 24 H 0.109 0.891 25 H 0.115 0.885 26 H 0.111 0.889 27 H 0.146 0.854 28 H 0.233 0.767 29 H 0.263 0.737 30 H 0.095 0.905 31 H 0.103 0.897 32 H 0.108 0.892 33 H 0.111 0.889 34 H 0.087 0.913 35 H 0.088 0.912 36 H 0.091 0.909 37 H 0.088 0.912 38 H 0.087 0.913 39 H 0.087 0.913 40 H 0.090 0.910 41 H 0.087 0.913 42 H 0.088 0.912 43 H 0.117 0.883 44 H 0.117 0.883 45 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -2.398 -5.049 3.207 6.444 hybrid contribution -0.185 1.197 0.445 1.291 sum -2.583 -3.851 3.652 5.903 Atomic orbital electron populations 1.21019 0.85755 1.05371 1.04351 1.24659 1.01369 0.95219 1.10271 1.18556 0.90803 0.97011 1.02575 1.25310 1.04552 0.94322 0.97219 1.86579 1.44789 1.65986 1.36872 0.86029 0.80053 0.81608 0.76009 1.18857 1.19763 1.11060 1.29397 1.11903 1.13555 1.24716 1.01270 0.73283 0.72872 0.72998 1.93562 1.40718 1.77929 1.83741 1.93471 1.79887 1.55907 1.68359 1.55399 1.81076 1.24499 1.25661 1.21346 0.99555 0.93304 0.87109 1.26658 1.07798 1.09479 1.07880 0.78048 0.65234 0.64759 0.64364 1.26401 1.16389 1.08701 1.06336 1.26327 1.05353 1.10037 1.15669 1.26344 1.13115 1.12206 1.05684 1.24873 1.01866 0.94917 0.96157 1.21067 0.87381 1.03022 1.06154 1.84225 0.94178 1.07482 1.68691 0.89110 0.88498 0.88929 0.85368 0.76734 0.73714 0.90453 0.89678 0.89178 0.88884 0.91333 0.91231 0.90856 0.91230 0.91349 0.91326 0.90989 0.91283 0.91235 0.88315 0.88306 0.87721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 0.58 8.06 71.24 0.57 1.15 16 2 C -0.20 -0.06 6.08 24.59 0.15 0.09 16 3 C -0.08 -0.32 4.53 -20.92 -0.09 -0.41 16 4 C -0.10 -0.45 2.62 71.23 0.19 -0.27 16 5 O -0.53 -0.78 12.95 -148.98 -1.93 -2.70 16 6 Si 0.94 2.98 25.34 68.60 1.74 4.71 16 7 H -0.26 -1.59 7.11 99.48 0.71 -0.88 16 8 H -0.27 -2.07 7.11 99.48 0.71 -1.37 16 9 H -0.19 0.77 4.89 99.48 0.49 1.26 16 10 C -0.70 -3.30 5.84 21.22 0.12 -3.18 16 11 S 2.71 17.58 5.38 -56.49 -0.30 17.27 16 12 O -0.97 -8.67 14.14 -128.00 -1.81 -10.48 16 13 O -0.99 -11.80 15.12 -128.00 -1.94 -13.73 16 14 N -1.10 -0.75 6.00 -187.50 -1.12 -1.87 16 15 C 0.11 -0.32 5.60 86.38 0.48 0.16 16 16 C -0.43 2.48 4.59 71.98 0.33 2.82 16 17 Si 1.09 -8.16 12.19 68.60 0.84 -7.32 16 18 C -0.47 2.21 8.65 113.37 0.98 3.20 16 19 C -0.47 2.08 8.65 113.37 0.98 3.06 16 20 C -0.47 2.53 8.65 113.37 0.98 3.51 16 21 C -0.06 -0.10 6.50 24.59 0.16 0.06 16 22 C -0.12 0.14 8.63 71.24 0.61 0.75 16 23 S 0.19 -0.18 23.31 -56.49 -1.32 -1.50 16 24 H 0.09 -0.54 6.42 -2.39 -0.02 -0.56 16 25 H 0.10 -0.81 8.14 -2.39 -0.02 -0.83 16 26 H 0.09 -0.81 4.34 -2.39 -0.01 -0.82 16 27 H 0.13 0.94 4.49 -2.39 -0.01 0.93 16 28 H 0.38 -2.29 6.10 -74.06 -0.45 -2.74 16 29 H 0.43 -0.74 8.65 -96.75 -0.84 -1.58 16 30 H 0.08 -0.41 7.79 -2.39 -0.02 -0.43 16 31 H 0.09 -0.34 7.40 -2.39 -0.02 -0.36 16 32 H 0.09 -0.53 7.96 -2.39 -0.02 -0.55 16 33 H 0.09 -0.62 7.96 -2.39 -0.02 -0.64 16 34 H 0.07 -0.27 7.96 -2.39 -0.02 -0.29 16 35 H 0.07 -0.30 7.96 -2.38 -0.02 -0.32 16 36 H 0.07 -0.38 7.79 -2.39 -0.02 -0.39 16 37 H 0.07 -0.30 7.96 -2.39 -0.02 -0.31 16 38 H 0.07 -0.26 7.96 -2.39 -0.02 -0.28 16 39 H 0.07 -0.28 7.96 -2.39 -0.02 -0.29 16 40 H 0.07 -0.42 7.79 -2.39 -0.02 -0.44 16 41 H 0.07 -0.33 7.96 -2.39 -0.02 -0.35 16 42 H 0.07 -0.34 7.96 -2.39 -0.02 -0.36 16 43 H 0.10 -0.56 8.14 -2.38 -0.02 -0.58 16 44 H 0.10 0.13 7.05 -2.39 -0.02 0.11 16 45 H 0.10 -0.36 7.83 -2.39 -0.02 -0.38 16 Total: 0.00 -17.03 375.57 -0.12 -17.14 By element: Atomic # 1 Polarization: -12.71 SS G_CDS: 0.26 Total: -12.46 kcal Atomic # 6 Polarization: 5.46 SS G_CDS: 5.47 Total: 10.93 kcal Atomic # 7 Polarization: -0.75 SS G_CDS: -1.12 Total: -1.87 kcal Atomic # 8 Polarization: -21.24 SS G_CDS: -5.67 Total: -26.92 kcal Atomic # 14 Polarization: -5.18 SS G_CDS: 2.57 Total: -2.61 kcal Atomic # 16 Polarization: 17.40 SS G_CDS: -1.62 Total: 15.78 kcal Total: -17.03 -0.12 -17.14 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_9476126_15065288.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.257 kcal (2) G-P(sol) polarization free energy of solvation -17.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.145 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds