Wall clock time and date at job start Mon Mar 8 2021 15:50:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86304 * 1 3 3 C 1.86302 * 109.46990 * 2 1 4 4 C 1.86300 * 109.47028 * 239.99808 * 2 1 3 5 5 C 1.86302 * 109.46765 * 120.00026 * 2 1 3 6 6 C 1.52992 * 109.47376 * 60.00050 * 5 2 1 7 7 N 1.46505 * 109.47247 * 179.97438 * 6 5 2 8 8 S 1.65594 * 120.00140 * 163.96612 * 7 6 5 9 9 O 1.42105 * 106.40277 * 311.56171 * 8 7 6 10 10 O 1.42102 * 106.40526 * 178.64486 * 8 7 6 11 11 C 1.76197 * 107.22216 * 65.10087 * 8 7 6 12 12 C 1.38212 * 120.00207 * 244.02362 * 11 8 7 13 13 C 1.38264 * 120.00143 * 180.02562 * 12 11 8 14 14 C 1.38215 * 119.99512 * 359.95526 * 13 12 11 15 15 C 1.38250 * 120.00240 * 359.97438 * 14 13 12 16 16 C 1.38213 * 120.00518 * 0.09231 * 15 14 13 17 17 C 1.50697 * 120.00637 * 179.97438 * 16 15 14 18 18 O 1.42898 * 109.47325 * 104.69325 * 17 16 15 19 19 Si 1.86303 * 109.46604 * 344.69334 * 17 16 15 20 20 H 1.48501 * 109.47469 * 60.00345 * 19 17 16 21 21 H 1.48504 * 109.46740 * 179.97438 * 19 17 16 22 22 H 1.48499 * 109.47219 * 299.99877 * 19 17 16 23 23 H 1.09006 * 109.47107 * 299.99948 * 1 2 3 24 24 H 1.09000 * 109.47078 * 60.00458 * 1 2 3 25 25 H 1.09004 * 109.47021 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.46670 * 179.97438 * 3 2 1 27 27 H 1.08991 * 109.47005 * 299.99780 * 3 2 1 28 28 H 1.09006 * 109.47153 * 60.00080 * 3 2 1 29 29 H 1.08999 * 109.46822 * 299.99930 * 4 2 1 30 30 H 1.08996 * 109.46749 * 60.00557 * 4 2 1 31 31 H 1.09000 * 109.46682 * 179.97438 * 4 2 1 32 32 H 1.09005 * 109.47227 * 299.99345 * 5 2 1 33 33 H 1.09006 * 109.46682 * 180.02562 * 5 2 1 34 34 H 1.09000 * 109.47137 * 60.00083 * 6 5 2 35 35 H 1.09000 * 109.47615 * 299.99853 * 6 5 2 36 36 H 0.96995 * 119.99737 * 343.95982 * 7 6 5 37 37 H 1.07998 * 120.00407 * 359.97438 * 12 11 8 38 38 H 1.07993 * 120.00036 * 179.97438 * 13 12 11 39 39 H 1.08008 * 119.99401 * 179.72488 * 14 13 12 40 40 H 1.08009 * 120.00036 * 180.02562 * 15 14 13 41 41 H 1.08994 * 109.47145 * 224.69781 * 17 16 15 42 42 H 0.96707 * 113.99792 * 299.99754 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4840 1.7565 0.0000 4 6 2.4840 -0.8783 -1.5211 5 6 2.4839 -0.8783 1.5212 6 6 1.9740 -2.3207 1.5212 7 7 2.4627 -3.0115 2.7171 8 16 1.7658 -4.4361 3.1934 9 8 0.3613 -4.2204 3.1784 10 8 2.4741 -4.8628 4.3490 11 6 2.0999 -5.6258 1.9375 12 6 1.0595 -6.1784 1.2146 13 6 1.3216 -7.1124 0.2294 14 6 2.6242 -7.4928 -0.0331 15 6 3.6650 -6.9390 0.6890 16 6 3.4029 -6.0063 1.6747 17 6 4.5373 -5.4030 2.4622 18 8 4.7735 -4.0680 2.0108 19 14 6.0763 -6.4236 2.2152 20 1 6.4306 -6.4440 0.7732 21 1 7.1943 -5.8287 2.9907 22 1 5.8308 -7.8109 2.6843 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 3.5740 1.7564 0.0005 27 1 2.1207 2.2702 -0.8899 28 1 2.1207 2.2703 0.8900 29 1 2.1207 -1.9059 -1.5210 30 1 2.1207 -0.3644 -2.4110 31 1 3.5740 -0.8779 -1.5213 32 1 2.1207 -0.3643 2.4112 33 1 3.5740 -0.8779 1.5214 34 1 2.3373 -2.8345 0.6313 35 1 0.8840 -2.3208 1.5212 36 1 3.1947 -2.6344 3.2299 37 1 0.0416 -5.8813 1.4199 38 1 0.5087 -7.5445 -0.3351 39 1 2.8286 -8.2257 -0.7997 40 1 4.6829 -7.2359 0.4835 41 1 4.2773 -5.3881 3.5206 42 1 5.0105 -4.0052 1.0754 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_9476126_2726874.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 15:50:43 Heat of formation + Delta-G solvation = -123.342958 kcal Electronic energy + Delta-G solvation = -23799.888521 eV Core-core repulsion = 20416.374631 eV Total energy + Delta-G solvation = -3383.513891 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 317.108 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.76157 -38.34997 -37.65753 -36.73869 -36.59322 -32.89707 -32.45495 -30.65056 -29.30598 -28.47483 -28.43509 -27.00539 -24.48122 -23.55601 -22.84590 -20.52850 -19.27584 -18.28577 -18.09052 -17.38698 -16.99371 -16.52237 -16.16159 -16.01750 -15.65946 -15.42566 -15.10181 -14.75867 -14.44528 -14.20170 -14.05092 -13.92663 -13.85839 -13.61813 -13.35328 -13.27903 -13.22061 -13.12318 -13.10090 -12.97893 -12.89213 -12.70793 -12.55582 -12.31244 -12.22901 -12.01315 -11.44412 -10.88373 -10.83472 -10.77155 -10.61705 -10.50708 -10.27989 -10.12416 -0.53064 -0.27639 0.05701 0.99438 1.30068 1.44242 1.66441 1.80969 1.81963 1.83420 2.12894 2.34456 2.60153 2.81129 3.27794 3.34535 3.51686 3.72922 3.82480 4.01557 4.11170 4.17574 4.23512 4.47436 4.53441 4.55796 4.66998 4.68181 4.69995 4.71601 4.72617 4.75396 4.76792 4.81182 4.95998 4.98507 5.04310 5.19358 5.37416 5.46220 5.50281 5.55512 5.65101 6.20063 6.35014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.456 4.456 2 Si 1.014 2.986 3 C -0.451 4.451 4 C -0.452 4.452 5 C -0.422 4.422 6 C 0.131 3.869 7 N -1.094 6.094 8 S 2.694 3.306 9 O -0.961 6.961 10 O -0.960 6.960 11 C -0.656 4.656 12 C -0.021 4.021 13 C -0.134 4.134 14 C -0.057 4.057 15 C -0.150 4.150 16 C -0.015 4.015 17 C -0.139 4.139 18 O -0.524 6.524 19 Si 0.964 3.036 20 H -0.252 1.252 21 H -0.247 1.247 22 H -0.247 1.247 23 H 0.070 0.930 24 H 0.068 0.932 25 H 0.070 0.930 26 H 0.068 0.932 27 H 0.069 0.931 28 H 0.069 0.931 29 H 0.068 0.932 30 H 0.068 0.932 31 H 0.069 0.931 32 H 0.085 0.915 33 H 0.088 0.912 34 H 0.063 0.937 35 H 0.077 0.923 36 H 0.424 0.576 37 H 0.147 0.853 38 H 0.136 0.864 39 H 0.135 0.865 40 H 0.132 0.868 41 H 0.151 0.849 42 H 0.377 0.623 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.066 0.534 -5.358 5.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.563 4.563 2 Si 1.210 2.790 3 C -0.558 4.558 4 C -0.559 4.559 5 C -0.508 4.508 6 C 0.005 3.995 7 N -0.857 5.857 8 S 2.783 3.217 9 O -0.951 6.951 10 O -0.950 6.950 11 C -0.742 4.742 12 C -0.040 4.040 13 C -0.153 4.153 14 C -0.076 4.076 15 C -0.168 4.168 16 C -0.016 4.016 17 C -0.248 4.248 18 O -0.329 6.329 19 Si 0.785 3.215 20 H -0.176 1.176 21 H -0.170 1.170 22 H -0.170 1.170 23 H 0.089 0.911 24 H 0.088 0.912 25 H 0.089 0.911 26 H 0.088 0.912 27 H 0.088 0.912 28 H 0.088 0.912 29 H 0.087 0.913 30 H 0.088 0.912 31 H 0.088 0.912 32 H 0.104 0.896 33 H 0.106 0.894 34 H 0.081 0.919 35 H 0.095 0.905 36 H 0.261 0.739 37 H 0.164 0.836 38 H 0.154 0.846 39 H 0.153 0.847 40 H 0.150 0.850 41 H 0.169 0.831 42 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges 2.060 -0.059 -4.182 4.662 hybrid contribution 0.271 -0.180 -1.090 1.138 sum 2.332 -0.239 -5.272 5.770 Atomic orbital electron populations 1.26204 1.20831 1.04660 1.04580 0.79146 0.67022 0.66900 0.65980 1.26124 1.06256 1.18931 1.04522 1.26164 1.06281 1.08032 1.15408 1.26457 1.06864 1.00836 1.16605 1.20948 0.99032 0.92970 0.86564 1.55330 1.51821 1.38836 1.39757 1.01879 0.73473 0.73025 0.73366 1.93584 1.29963 1.85046 1.86504 1.93552 1.73849 1.81508 1.46061 1.30871 0.99542 1.21523 1.22249 1.21108 0.98627 0.92616 0.91675 1.21406 0.97287 0.98174 0.98430 1.21471 0.92667 0.96510 0.96912 1.21298 1.00119 0.98341 0.97090 1.19917 0.93300 0.94225 0.94182 1.25764 1.04521 0.90918 1.03641 1.86573 1.91723 1.23421 1.31220 0.85441 0.76274 0.78961 0.80812 1.17569 1.17018 1.17046 0.91075 0.91232 0.91082 0.91237 0.91212 0.91197 0.91255 0.91231 0.91181 0.89605 0.89371 0.91920 0.90514 0.73913 0.83572 0.84582 0.84748 0.85020 0.83130 0.77612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.46 0.86 8.65 101.05 0.87 1.73 16 2 Si 1.01 -3.74 12.19 -169.99 -2.07 -5.81 16 3 C -0.45 1.00 8.65 101.05 0.87 1.88 16 4 C -0.45 1.30 8.65 101.05 0.87 2.17 16 5 C -0.42 1.26 4.59 37.15 0.17 1.43 16 6 C 0.13 -0.22 5.60 -4.04 -0.02 -0.24 16 7 N -1.09 0.32 4.21 -10.61 -0.04 0.27 16 8 S 2.69 6.85 5.07 -107.50 -0.54 6.31 16 9 O -0.96 -4.81 16.43 -57.17 -0.94 -5.75 16 10 O -0.96 -4.79 15.56 -57.17 -0.89 -5.68 16 11 C -0.66 -0.85 5.88 -39.58 -0.23 -1.08 16 12 C -0.02 -0.01 9.55 -39.58 -0.38 -0.39 16 13 C -0.13 0.12 10.05 -39.58 -0.40 -0.28 16 14 C -0.06 0.08 10.05 -39.59 -0.40 -0.32 16 15 C -0.15 0.10 8.66 -39.59 -0.34 -0.24 16 16 C -0.01 -0.01 5.25 -104.62 -0.55 -0.55 16 17 C -0.14 0.04 2.03 36.00 0.07 0.12 16 18 O -0.52 1.09 10.49 -35.23 -0.37 0.72 16 19 Si 0.96 -0.87 25.50 -169.99 -4.34 -5.20 16 20 H -0.25 0.45 6.72 56.52 0.38 0.83 16 21 H -0.25 -0.08 7.11 56.52 0.40 0.32 16 22 H -0.25 -0.05 7.11 56.52 0.40 0.36 16 23 H 0.07 -0.11 7.96 -51.93 -0.41 -0.52 16 24 H 0.07 -0.12 7.96 -51.93 -0.41 -0.54 16 25 H 0.07 -0.12 7.79 -51.93 -0.40 -0.53 16 26 H 0.07 -0.15 7.96 -51.93 -0.41 -0.57 16 27 H 0.07 -0.13 7.96 -51.93 -0.41 -0.55 16 28 H 0.07 -0.14 7.96 -51.93 -0.41 -0.55 16 29 H 0.07 -0.20 7.79 -51.93 -0.40 -0.61 16 30 H 0.07 -0.17 7.96 -51.93 -0.41 -0.58 16 31 H 0.07 -0.21 7.96 -51.93 -0.41 -0.62 16 32 H 0.09 -0.23 7.96 -51.93 -0.41 -0.65 16 33 H 0.09 -0.32 7.96 -51.93 -0.41 -0.74 16 34 H 0.06 -0.21 7.79 -51.93 -0.40 -0.61 16 35 H 0.08 -0.11 7.38 -51.93 -0.38 -0.49 16 36 H 0.42 -0.54 8.12 -34.46 -0.28 -0.82 16 37 H 0.15 -0.03 7.34 -52.49 -0.39 -0.42 16 38 H 0.14 -0.42 8.06 -52.49 -0.42 -0.84 16 39 H 0.13 -0.49 8.06 -52.48 -0.42 -0.92 16 40 H 0.13 -0.30 4.89 -52.48 -0.26 -0.55 16 41 H 0.15 0.15 5.42 -51.93 -0.28 -0.14 16 42 H 0.38 -2.02 8.70 45.56 0.40 -1.62 16 LS Contribution 351.01 15.07 5.29 5.29 Total: 0.00 -7.84 351.01 -9.15 -16.99 By element: Atomic # 1 Polarization: -5.56 SS G_CDS: -5.79 Total: -11.35 kcal Atomic # 6 Polarization: 3.67 SS G_CDS: 0.55 Total: 4.22 kcal Atomic # 7 Polarization: 0.32 SS G_CDS: -0.04 Total: 0.27 kcal Atomic # 8 Polarization: -8.51 SS G_CDS: -2.20 Total: -10.71 kcal Atomic # 14 Polarization: -4.61 SS G_CDS: -6.41 Total: -11.02 kcal Atomic # 16 Polarization: 6.85 SS G_CDS: -0.54 Total: 6.31 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -7.84 -9.15 -16.99 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_9476126_2726874.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.357 kcal (2) G-P(sol) polarization free energy of solvation -7.838 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.986 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds