Wall clock time and date at job start Mon Mar 8 2021 15:50:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86304 * 1 3 3 C 1.86302 * 109.46990 * 2 1 4 4 C 1.86300 * 109.47028 * 239.99808 * 2 1 3 5 5 C 1.86302 * 109.46765 * 120.00026 * 2 1 3 6 6 C 1.52992 * 109.47376 * 60.00050 * 5 2 1 7 7 N 1.46505 * 109.47247 * 179.97438 * 6 5 2 8 8 S 1.65594 * 120.00140 * 163.96612 * 7 6 5 9 9 O 1.42105 * 106.40277 * 311.56171 * 8 7 6 10 10 O 1.42102 * 106.40526 * 178.64486 * 8 7 6 11 11 C 1.76197 * 107.22216 * 65.10087 * 8 7 6 12 12 C 1.38212 * 120.00207 * 244.02362 * 11 8 7 13 13 C 1.38264 * 120.00143 * 180.02562 * 12 11 8 14 14 C 1.38215 * 119.99512 * 359.95526 * 13 12 11 15 15 C 1.38250 * 120.00240 * 359.97438 * 14 13 12 16 16 C 1.38213 * 120.00518 * 0.09231 * 15 14 13 17 17 C 1.50697 * 120.00637 * 179.97438 * 16 15 14 18 18 O 1.42898 * 109.47325 * 104.69325 * 17 16 15 19 19 Si 1.86303 * 109.46604 * 344.69334 * 17 16 15 20 20 H 1.48501 * 109.47469 * 60.00345 * 19 17 16 21 21 H 1.48504 * 109.46740 * 179.97438 * 19 17 16 22 22 H 1.48499 * 109.47219 * 299.99877 * 19 17 16 23 23 H 1.09006 * 109.47107 * 299.99948 * 1 2 3 24 24 H 1.09000 * 109.47078 * 60.00458 * 1 2 3 25 25 H 1.09004 * 109.47021 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.46670 * 179.97438 * 3 2 1 27 27 H 1.08991 * 109.47005 * 299.99780 * 3 2 1 28 28 H 1.09006 * 109.47153 * 60.00080 * 3 2 1 29 29 H 1.08999 * 109.46822 * 299.99930 * 4 2 1 30 30 H 1.08996 * 109.46749 * 60.00557 * 4 2 1 31 31 H 1.09000 * 109.46682 * 179.97438 * 4 2 1 32 32 H 1.09005 * 109.47227 * 299.99345 * 5 2 1 33 33 H 1.09006 * 109.46682 * 180.02562 * 5 2 1 34 34 H 1.09000 * 109.47137 * 60.00083 * 6 5 2 35 35 H 1.09000 * 109.47615 * 299.99853 * 6 5 2 36 36 H 0.96995 * 119.99737 * 343.95982 * 7 6 5 37 37 H 1.07998 * 120.00407 * 359.97438 * 12 11 8 38 38 H 1.07993 * 120.00036 * 179.97438 * 13 12 11 39 39 H 1.08008 * 119.99401 * 179.72488 * 14 13 12 40 40 H 1.08009 * 120.00036 * 180.02562 * 15 14 13 41 41 H 1.08994 * 109.47145 * 224.69781 * 17 16 15 42 42 H 0.96707 * 113.99792 * 299.99754 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4840 1.7565 0.0000 4 6 2.4840 -0.8783 -1.5211 5 6 2.4839 -0.8783 1.5212 6 6 1.9740 -2.3207 1.5212 7 7 2.4627 -3.0115 2.7171 8 16 1.7658 -4.4361 3.1934 9 8 0.3613 -4.2204 3.1784 10 8 2.4741 -4.8628 4.3490 11 6 2.0999 -5.6258 1.9375 12 6 1.0595 -6.1784 1.2146 13 6 1.3216 -7.1124 0.2294 14 6 2.6242 -7.4928 -0.0331 15 6 3.6650 -6.9390 0.6890 16 6 3.4029 -6.0063 1.6747 17 6 4.5373 -5.4030 2.4622 18 8 4.7735 -4.0680 2.0108 19 14 6.0763 -6.4236 2.2152 20 1 6.4306 -6.4440 0.7732 21 1 7.1943 -5.8287 2.9907 22 1 5.8308 -7.8109 2.6843 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 3.5740 1.7564 0.0005 27 1 2.1207 2.2702 -0.8899 28 1 2.1207 2.2703 0.8900 29 1 2.1207 -1.9059 -1.5210 30 1 2.1207 -0.3644 -2.4110 31 1 3.5740 -0.8779 -1.5213 32 1 2.1207 -0.3643 2.4112 33 1 3.5740 -0.8779 1.5214 34 1 2.3373 -2.8345 0.6313 35 1 0.8840 -2.3208 1.5212 36 1 3.1947 -2.6344 3.2299 37 1 0.0416 -5.8813 1.4199 38 1 0.5087 -7.5445 -0.3351 39 1 2.8286 -8.2257 -0.7997 40 1 4.6829 -7.2359 0.4835 41 1 4.2773 -5.3881 3.5206 42 1 5.0105 -4.0052 1.0754 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_9476126_2726874.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 15:50:43 Heat of formation + Delta-G solvation = -121.324164 kcal Electronic energy + Delta-G solvation = -23799.800980 eV Core-core repulsion = 20416.374631 eV Total energy + Delta-G solvation = -3383.426349 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 317.108 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.68587 -38.53437 -37.59169 -37.01224 -36.53535 -32.80603 -32.39579 -30.52676 -29.11896 -28.26174 -28.23246 -26.92497 -24.43360 -23.41409 -22.77746 -20.63037 -19.26602 -18.39139 -18.04758 -17.40287 -16.93994 -16.45408 -16.06773 -15.96430 -15.58849 -15.46037 -15.03722 -14.65827 -14.34440 -14.01004 -13.89192 -13.80164 -13.68824 -13.55790 -13.28559 -13.27627 -13.17984 -13.15341 -13.09561 -12.92690 -12.89706 -12.62747 -12.46271 -12.25137 -12.19986 -11.92435 -11.41080 -10.68449 -10.63902 -10.59072 -10.51222 -10.43103 -10.21490 -10.05556 -0.62612 -0.28342 0.12710 1.06961 1.38720 1.50870 1.83138 1.89245 2.05444 2.08565 2.18582 2.38661 2.69096 2.80750 3.31601 3.39048 3.58385 3.79728 3.98509 4.15539 4.23958 4.28273 4.40256 4.52185 4.60817 4.72770 4.80629 4.85091 4.86961 4.87919 4.90607 4.91556 4.95573 4.97250 5.02395 5.15844 5.18828 5.28896 5.58017 5.66996 5.70867 5.74938 5.75326 6.27154 6.69327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.479 4.479 2 Si 1.088 2.912 3 C -0.468 4.468 4 C -0.462 4.462 5 C -0.428 4.428 6 C 0.118 3.882 7 N -1.086 6.086 8 S 2.697 3.303 9 O -0.995 6.995 10 O -0.993 6.993 11 C -0.665 4.665 12 C -0.037 4.037 13 C -0.136 4.136 14 C -0.055 4.055 15 C -0.155 4.155 16 C -0.022 4.022 17 C -0.142 4.142 18 O -0.527 6.527 19 Si 0.992 3.008 20 H -0.227 1.227 21 H -0.268 1.268 22 H -0.265 1.265 23 H 0.064 0.936 24 H 0.066 0.934 25 H 0.067 0.933 26 H 0.071 0.929 27 H 0.065 0.935 28 H 0.065 0.935 29 H 0.072 0.928 30 H 0.065 0.935 31 H 0.075 0.925 32 H 0.082 0.918 33 H 0.100 0.900 34 H 0.083 0.917 35 H 0.070 0.930 36 H 0.428 0.572 37 H 0.145 0.855 38 H 0.158 0.842 39 H 0.163 0.837 40 H 0.150 0.850 41 H 0.132 0.868 42 H 0.393 0.607 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.080 0.041 -7.198 7.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.584 4.584 2 Si 1.279 2.721 3 C -0.574 4.574 4 C -0.569 4.569 5 C -0.513 4.513 6 C -0.007 4.007 7 N -0.851 5.851 8 S 2.789 3.211 9 O -0.984 6.984 10 O -0.983 6.983 11 C -0.754 4.754 12 C -0.056 4.056 13 C -0.155 4.155 14 C -0.073 4.073 15 C -0.174 4.174 16 C -0.024 4.024 17 C -0.251 4.251 18 O -0.334 6.334 19 Si 0.814 3.186 20 H -0.150 1.150 21 H -0.193 1.193 22 H -0.190 1.190 23 H 0.083 0.917 24 H 0.086 0.914 25 H 0.087 0.913 26 H 0.090 0.910 27 H 0.085 0.915 28 H 0.084 0.916 29 H 0.091 0.909 30 H 0.084 0.916 31 H 0.094 0.906 32 H 0.101 0.899 33 H 0.119 0.881 34 H 0.101 0.899 35 H 0.089 0.911 36 H 0.267 0.733 37 H 0.163 0.837 38 H 0.176 0.824 39 H 0.181 0.819 40 H 0.167 0.833 41 H 0.149 0.851 42 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges 3.050 -0.512 -6.020 6.768 hybrid contribution -0.055 -0.011 -0.548 0.551 sum 2.995 -0.523 -6.568 7.238 Atomic orbital electron populations 1.26506 1.23321 1.04364 1.04174 0.78010 0.64356 0.65047 0.64728 1.26339 1.06582 1.20302 1.04176 1.26279 1.06784 1.08329 1.15530 1.26597 1.07775 0.99855 1.17104 1.21226 0.98991 0.93873 0.86629 1.55134 1.51733 1.37864 1.40350 1.01384 0.72686 0.73655 0.73370 1.93534 1.32016 1.85733 1.87163 1.93506 1.74158 1.82318 1.48299 1.30575 1.00455 1.21950 1.22392 1.21263 0.98481 0.93443 0.92443 1.21703 0.98427 0.97482 0.97899 1.21860 0.92150 0.96333 0.96948 1.21557 1.01320 0.97827 0.96668 1.20058 0.92932 0.94710 0.94665 1.25752 1.04835 0.91827 1.02722 1.86543 1.91728 1.22427 1.32733 0.85058 0.74688 0.77194 0.81654 1.14971 1.19325 1.18961 0.91700 0.91445 0.91336 0.90960 0.91543 0.91606 0.90918 0.91593 0.90577 0.89890 0.88115 0.89900 0.91128 0.73339 0.83741 0.82422 0.81931 0.83316 0.85055 0.75742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.48 1.49 8.65 113.37 0.98 2.47 16 2 Si 1.09 -8.41 12.19 68.60 0.84 -7.57 16 3 C -0.47 2.15 8.65 113.37 0.98 3.13 16 4 C -0.46 3.14 8.65 113.37 0.98 4.12 16 5 C -0.43 2.71 4.59 71.98 0.33 3.05 16 6 C 0.12 -0.38 5.60 86.38 0.48 0.11 16 7 N -1.09 -0.36 4.21 -187.49 -0.79 -1.15 16 8 S 2.70 18.67 5.07 -56.49 -0.29 18.38 16 9 O -0.99 -12.25 16.43 -128.00 -2.10 -14.35 16 10 O -0.99 -12.34 15.56 -128.00 -1.99 -14.33 16 11 C -0.67 -2.24 5.88 22.27 0.13 -2.11 16 12 C -0.04 -0.06 9.55 22.27 0.21 0.16 16 13 C -0.14 0.40 10.05 22.27 0.22 0.62 16 14 C -0.06 0.25 10.05 22.27 0.22 0.48 16 15 C -0.16 0.43 8.66 22.27 0.19 0.63 16 16 C -0.02 -0.01 5.25 -19.87 -0.10 -0.12 16 17 C -0.14 0.04 2.03 71.24 0.14 0.19 16 18 O -0.53 2.37 10.49 -148.98 -1.56 0.81 16 19 Si 0.99 -2.21 25.50 68.60 1.75 -0.46 16 20 H -0.23 1.41 6.72 99.48 0.67 2.08 16 21 H -0.27 -0.31 7.11 99.48 0.71 0.39 16 22 H -0.27 -0.16 7.11 99.48 0.71 0.55 16 23 H 0.06 -0.13 7.96 -2.38 -0.02 -0.15 16 24 H 0.07 -0.19 7.96 -2.39 -0.02 -0.21 16 25 H 0.07 -0.18 7.79 -2.39 -0.02 -0.20 16 26 H 0.07 -0.36 7.96 -2.39 -0.02 -0.38 16 27 H 0.07 -0.25 7.96 -2.39 -0.02 -0.27 16 28 H 0.06 -0.24 7.96 -2.38 -0.02 -0.26 16 29 H 0.07 -0.52 7.79 -2.39 -0.02 -0.54 16 30 H 0.06 -0.37 7.96 -2.39 -0.02 -0.39 16 31 H 0.08 -0.58 7.96 -2.39 -0.02 -0.60 16 32 H 0.08 -0.44 7.96 -2.38 -0.02 -0.46 16 33 H 0.10 -0.86 7.96 -2.38 -0.02 -0.88 16 34 H 0.08 -0.61 7.79 -2.39 -0.02 -0.63 16 35 H 0.07 -0.14 7.38 -2.39 -0.02 -0.15 16 36 H 0.43 -0.71 8.12 -96.75 -0.79 -1.50 16 37 H 0.14 0.14 7.34 -2.91 -0.02 0.12 16 38 H 0.16 -1.24 8.06 -2.91 -0.02 -1.26 16 39 H 0.16 -1.71 8.06 -2.91 -0.02 -1.73 16 40 H 0.15 -1.01 4.89 -2.91 -0.01 -1.02 16 41 H 0.13 0.48 5.42 -2.39 -0.01 0.47 16 42 H 0.39 -4.75 8.70 -74.05 -0.64 -5.39 16 Total: 0.00 -19.33 351.01 0.95 -18.38 By element: Atomic # 1 Polarization: -12.72 SS G_CDS: 0.31 Total: -12.41 kcal Atomic # 6 Polarization: 7.93 SS G_CDS: 4.78 Total: 12.72 kcal Atomic # 7 Polarization: -0.36 SS G_CDS: -0.79 Total: -1.15 kcal Atomic # 8 Polarization: -22.22 SS G_CDS: -5.66 Total: -27.88 kcal Atomic # 14 Polarization: -10.62 SS G_CDS: 2.59 Total: -8.04 kcal Atomic # 16 Polarization: 18.67 SS G_CDS: -0.29 Total: 18.38 kcal Total: -19.33 0.95 -18.38 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_9476126_2726874.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.946 kcal (2) G-P(sol) polarization free energy of solvation -19.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.947 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.378 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds