Wall clock time and date at job start Mon Mar 8 2021 11:58:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34230 * 116.99837 * 2 1 4 4 O 1.20831 * 119.99897 * 359.97438 * 3 2 1 5 5 C 1.50701 * 120.00224 * 180.02562 * 3 2 1 6 6 H 1.08999 * 112.90335 * 311.24855 * 5 3 2 7 7 C 1.53954 * 113.66585 * 82.43477 * 5 3 2 8 8 C 1.53788 * 87.01565 * 139.93391 * 7 5 3 9 9 H 1.09007 * 113.61188 * 89.22959 * 8 7 5 10 10 S 1.81398 * 113.61293 * 220.04597 * 8 7 5 11 11 O 1.42105 * 110.53865 * 169.65012 * 10 8 7 12 12 O 1.42090 * 110.54331 * 32.90088 * 10 8 7 13 13 O 1.52201 * 104.45207 * 281.27150 * 10 8 7 14 14 C 1.35997 * 114.00115 * 285.30713 * 13 10 8 15 15 C 1.38892 * 120.03774 * 269.79693 * 14 13 10 16 16 F 1.35096 * 120.03298 * 359.97101 * 15 14 13 17 17 C 1.38337 * 119.92890 * 179.72524 * 15 14 13 18 18 C 1.50702 * 119.99572 * 180.27532 * 17 15 14 19 19 O 1.42895 * 109.47074 * 30.26800 * 18 17 15 20 20 Si 1.86296 * 109.47466 * 150.27195 * 18 17 15 21 21 C 1.38436 * 120.00621 * 0.54229 * 17 15 14 22 22 F 1.35106 * 119.96239 * 179.70216 * 21 17 15 23 23 C 1.38455 * 120.07625 * 359.73140 * 21 17 15 24 24 C 1.38188 * 120.07039 * 359.97438 * 23 21 17 25 25 C 1.53779 * 113.61306 * 180.02562 * 5 3 2 26 26 H 1.08996 * 109.47338 * 60.00107 * 1 2 3 27 27 H 1.09003 * 109.46946 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.46872 * 299.99913 * 1 2 3 29 29 H 1.08998 * 113.61142 * 25.41918 * 7 5 3 30 30 H 1.08999 * 113.66576 * 254.45650 * 7 5 3 31 31 H 1.09002 * 109.46854 * 270.27455 * 18 17 15 32 32 H 0.96696 * 114.00046 * 60.00664 * 19 18 17 33 33 H 1.48490 * 110.00154 * 179.97438 * 20 18 17 34 34 H 1.48501 * 109.99899 * 301.31955 * 20 18 17 35 35 H 1.08001 * 119.96475 * 179.97438 * 23 21 17 36 36 H 1.07997 * 120.00451 * 180.02562 * 24 23 21 37 37 H 1.08995 * 113.61737 * 105.47018 * 25 5 3 38 38 H 1.08999 * 113.69436 * 334.56993 * 25 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2094 -0.0005 5 6 3.5663 1.2750 -0.0006 6 1 4.0250 0.6360 0.7540 7 6 4.1926 1.1223 -1.3987 8 6 5.1806 2.2272 -0.9886 9 1 6.0812 1.8498 -0.5041 10 16 5.5380 3.4114 -2.3154 11 8 6.2588 4.5260 -1.8081 12 8 4.3974 3.5918 -3.1433 13 8 6.5393 2.6915 -3.2075 14 6 7.7936 2.6214 -2.6868 15 6 8.7144 3.6265 -2.9536 16 9 8.3650 4.6745 -3.7311 17 6 9.9879 3.5557 -2.4181 18 6 10.9862 4.6485 -2.7014 19 8 10.2972 5.8865 -2.8874 20 14 12.1631 4.8023 -1.2655 21 6 10.3472 2.4783 -1.6264 22 9 11.5932 2.4071 -1.1089 23 6 9.4314 1.4734 -1.3650 24 6 8.1564 1.5439 -1.8933 25 6 4.1076 2.7144 0.0001 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 3.5253 1.4125 -2.2101 30 1 4.6646 0.1536 -1.5632 31 1 11.5451 4.4046 -3.6049 32 1 9.7776 6.1664 -2.1213 33 1 13.1530 5.8764 -1.5329 34 1 11.4099 5.1033 -0.0216 35 1 9.7137 0.6335 -0.7475 36 1 7.4428 0.7597 -1.6884 37 1 4.5111 3.0287 0.9626 38 1 3.4179 3.4419 -0.4277 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_9576490_13206342.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 11:58:08 Heat of formation + Delta-G solvation = -237.906292 kcal Electronic energy + Delta-G solvation = -32043.194501 eV Core-core repulsion = 27004.476215 eV Total energy + Delta-G solvation = -5038.718286 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 365.060 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -50.76809 -50.34127 -42.23800 -41.93628 -39.73707 -39.57586 -38.58459 -37.82917 -37.47931 -37.46848 -32.94708 -31.18875 -29.92406 -27.87570 -27.32343 -27.13512 -24.94066 -23.92613 -23.25082 -21.91423 -20.85011 -19.97033 -19.63370 -19.58245 -19.04370 -18.95672 -18.30433 -17.98883 -17.57124 -17.52955 -17.34111 -16.92578 -16.73143 -16.59656 -16.37943 -16.02626 -15.91106 -15.71306 -15.39239 -14.83040 -14.53140 -14.41782 -14.22080 -14.15541 -13.98050 -13.82623 -13.74482 -13.64768 -13.51371 -13.37926 -13.29125 -13.10379 -12.98220 -12.75602 -12.60623 -12.00917 -11.89743 -11.86637 -11.64583 -11.36699 -11.07341 -10.13232 -10.06550 -4.70025 -1.38404 -0.55124 -0.42131 0.69325 1.01866 1.10368 1.53105 1.67236 1.81420 1.89978 2.33287 2.41604 2.50166 2.70765 2.84404 2.95815 3.02020 3.09595 3.19467 3.49175 3.59078 3.61307 3.69384 3.88363 4.22680 4.25952 4.26694 4.27765 4.28485 4.35314 4.39339 4.43861 4.53885 4.59487 4.64260 4.69330 4.75207 4.79652 4.95147 5.30734 5.35059 6.23990 6.59945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.355 6.355 3 C 0.460 3.540 4 O -0.544 6.544 5 C -0.086 4.086 6 H 0.186 0.814 7 C -0.096 4.096 8 C -0.612 4.612 9 H 0.217 0.783 10 S 2.574 3.426 11 O -0.978 6.978 12 O -0.966 6.966 13 O -0.656 6.656 14 C 0.000 4.000 15 C 0.135 3.865 16 F -0.125 7.125 17 C -0.188 4.188 18 C -0.099 4.099 19 O -0.547 6.547 20 Si 0.762 3.238 21 C 0.144 3.856 22 F -0.067 7.067 23 C -0.106 4.106 24 C -0.058 4.058 25 C -0.106 4.106 26 H 0.056 0.944 27 H 0.132 0.868 28 H 0.061 0.939 29 H 0.086 0.914 30 H 0.157 0.843 31 H 0.138 0.862 32 H 0.384 0.616 33 H -0.297 1.297 34 H -0.284 1.284 35 H 0.220 0.780 36 H 0.219 0.781 37 H 0.133 0.867 38 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.132 -13.812 7.185 16.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.271 6.271 3 C 0.304 3.696 4 O -0.433 6.433 5 C -0.105 4.105 6 H 0.203 0.797 7 C -0.135 4.135 8 C -0.723 4.723 9 H 0.234 0.766 10 S 2.675 3.325 11 O -0.976 6.976 12 O -0.964 6.964 13 O -0.615 6.615 14 C -0.043 4.043 15 C 0.113 3.887 16 F -0.103 7.103 17 C -0.190 4.190 18 C -0.206 4.206 19 O -0.354 6.354 20 Si 0.666 3.334 21 C 0.123 3.877 22 F -0.045 7.045 23 C -0.124 4.124 24 C -0.077 4.077 25 C -0.144 4.144 26 H 0.075 0.925 27 H 0.150 0.850 28 H 0.080 0.920 29 H 0.104 0.896 30 H 0.175 0.825 31 H 0.155 0.845 32 H 0.233 0.767 33 H -0.226 1.226 34 H -0.210 1.210 35 H 0.237 0.763 36 H 0.236 0.764 37 H 0.151 0.849 38 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 4.408 -12.455 6.548 14.746 hybrid contribution -1.804 1.746 -0.434 2.548 sum 2.604 -10.709 6.114 12.603 Atomic orbital electron populations 1.23544 0.75180 1.05750 1.02310 1.86502 1.24567 1.32658 1.83360 1.24292 0.93072 0.81141 0.71079 1.90710 1.68137 1.37824 1.46668 1.22697 0.85374 0.99903 1.02563 0.79686 1.22913 0.94996 1.00159 0.95389 1.32103 1.10203 1.14303 1.15692 0.76573 1.06035 0.73723 0.76353 0.76358 1.93616 1.70092 1.52095 1.81819 1.93610 1.51426 1.85350 1.66055 1.85774 1.27899 1.84268 1.63519 1.18585 0.81255 0.99492 1.04982 1.17607 0.93203 0.85062 0.92791 1.91570 1.92074 1.55171 1.71523 1.20466 0.95097 1.00604 1.02837 1.25420 0.98595 0.81916 1.14622 1.86603 1.66958 1.37781 1.44060 0.93978 0.80403 0.86834 0.72228 1.17412 0.81237 0.94879 0.94140 1.90786 1.37558 1.91899 1.84273 1.21693 0.90257 0.99430 1.00975 1.21840 0.98981 0.94923 0.91987 1.22816 0.94038 0.96503 1.01086 0.92489 0.84988 0.92029 0.89578 0.82504 0.84466 0.76669 1.22633 1.20967 0.76346 0.76411 0.84898 0.90242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.07 10.56 113.37 1.20 1.13 16 2 O -0.36 0.21 10.57 -51.42 -0.54 -0.34 16 3 C 0.46 0.55 7.49 71.24 0.53 1.08 16 4 O -0.54 -5.37 15.65 21.95 0.34 -5.03 16 5 C -0.09 0.73 4.26 -10.95 -0.05 0.68 16 6 H 0.19 -3.25 8.14 -2.39 -0.02 -3.26 16 7 C -0.10 0.96 7.21 31.18 0.22 1.18 16 8 C -0.61 5.62 3.91 31.14 0.12 5.74 16 9 H 0.22 -4.41 6.31 -2.38 -0.02 -4.43 16 10 S 2.57 11.91 5.10 -56.49 -0.29 11.62 16 11 O -0.98 -10.14 15.97 -118.57 -1.89 -12.04 16 12 O -0.97 -13.64 17.37 -118.57 -2.06 -15.70 16 13 O -0.66 -1.93 9.92 -62.61 -0.62 -2.55 16 14 C 0.00 0.00 4.80 22.52 0.11 0.11 16 15 C 0.14 0.66 6.30 22.45 0.14 0.80 16 16 F -0.13 -1.66 14.71 44.97 0.66 -0.99 16 17 C -0.19 0.07 5.33 -19.79 -0.11 -0.03 16 18 C -0.10 -0.18 2.93 71.24 0.21 0.03 16 19 O -0.55 -4.39 10.84 -148.98 -1.61 -6.01 16 20 Si 0.76 -0.33 28.61 68.60 1.96 1.63 16 21 C 0.14 -1.20 6.73 22.37 0.15 -1.05 16 22 F -0.07 0.68 12.43 44.97 0.56 1.24 16 23 C -0.11 1.66 10.02 22.31 0.22 1.88 16 24 C -0.06 0.79 8.48 22.35 0.19 0.98 16 25 C -0.11 0.59 7.00 31.13 0.22 0.81 16 26 H 0.06 -0.04 8.13 -2.39 -0.02 -0.06 16 27 H 0.13 -1.13 8.14 -2.39 -0.02 -1.15 16 28 H 0.06 -0.11 8.13 -2.39 -0.02 -0.13 16 29 H 0.09 -0.33 7.46 -2.39 -0.02 -0.34 16 30 H 0.16 -3.03 8.14 -2.39 -0.02 -3.05 16 31 H 0.14 -0.06 7.96 -2.39 -0.02 -0.08 16 32 H 0.38 1.61 8.70 -74.06 -0.64 0.97 16 33 H -0.30 -2.15 7.11 99.48 0.71 -1.44 16 34 H -0.28 -1.02 7.11 99.48 0.71 -0.31 16 35 H 0.22 -5.52 8.06 -2.91 -0.02 -5.54 16 36 H 0.22 -5.36 7.34 -2.91 -0.02 -5.38 16 37 H 0.13 -1.44 8.14 -2.39 -0.02 -1.46 16 38 H 0.08 0.10 7.40 -2.39 -0.02 0.08 16 Total: 0.00 -40.61 342.46 0.21 -40.40 By element: Atomic # 1 Polarization: -26.13 SS G_CDS: 0.54 Total: -25.59 kcal Atomic # 6 Polarization: 10.18 SS G_CDS: 3.16 Total: 13.35 kcal Atomic # 8 Polarization: -35.27 SS G_CDS: -6.39 Total: -41.66 kcal Atomic # 9 Polarization: -0.97 SS G_CDS: 1.22 Total: 0.25 kcal Atomic # 14 Polarization: -0.33 SS G_CDS: 1.96 Total: 1.63 kcal Atomic # 16 Polarization: 11.91 SS G_CDS: -0.29 Total: 11.62 kcal Total: -40.61 0.21 -40.40 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_9576490_13206342.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -197.508 kcal (2) G-P(sol) polarization free energy of solvation -40.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -238.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.398 kcal (6) G-S(sol) free energy of system = (1) + (5) -237.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds