Wall clock time and date at job start Mon Mar 8 2021 13:06:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86299 * 1 3 3 C 1.86301 * 109.47227 * 2 1 4 4 C 1.86301 * 109.47245 * 239.99837 * 2 1 3 5 5 C 1.86301 * 109.47246 * 120.00029 * 2 1 3 6 6 C 1.53003 * 109.47213 * 59.99493 * 5 2 1 7 7 C 1.53003 * 109.47329 * 180.02562 * 6 5 2 8 8 S 1.81393 * 109.47165 * 180.02562 * 7 6 5 9 9 O 1.42104 * 110.54227 * 68.37849 * 8 7 6 10 10 O 1.42094 * 110.54440 * 291.62798 * 8 7 6 11 11 O 1.52195 * 104.44880 * 179.97438 * 8 7 6 12 12 C 1.36009 * 114.00018 * 75.00139 * 11 8 7 13 13 C 1.38588 * 120.03605 * 269.97859 * 12 11 8 14 14 C 1.38231 * 119.99097 * 180.02562 * 13 12 11 15 15 C 1.38414 * 120.07286 * 359.72785 * 14 13 12 16 16 F 1.35099 * 119.96661 * 180.27521 * 15 14 13 17 17 C 1.38487 * 120.06920 * 0.54407 * 15 14 13 18 18 C 1.50701 * 119.99497 * 179.72398 * 17 15 14 19 19 O 1.42899 * 109.46951 * 61.62880 * 18 17 15 20 20 Si 1.86299 * 109.47240 * 301.62655 * 18 17 15 21 21 H 1.48496 * 109.46937 * 186.00016 * 20 18 17 22 22 H 1.48501 * 109.47239 * 305.99856 * 20 18 17 23 23 H 1.48500 * 109.47050 * 66.00324 * 20 18 17 24 24 C 1.38290 * 120.00889 * 359.45694 * 17 15 14 25 25 F 1.35094 * 120.03805 * 180.24820 * 24 17 15 26 26 H 1.09003 * 109.46552 * 299.99955 * 1 2 3 27 27 H 1.08996 * 109.47054 * 60.00024 * 1 2 3 28 28 H 1.08995 * 109.47343 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.46995 * 180.02562 * 3 2 1 30 30 H 1.08996 * 109.47084 * 299.99957 * 3 2 1 31 31 H 1.08995 * 109.47017 * 60.00405 * 3 2 1 32 32 H 1.09003 * 109.47114 * 300.00271 * 4 2 1 33 33 H 1.08996 * 109.46981 * 60.00094 * 4 2 1 34 34 H 1.08997 * 109.47438 * 180.02562 * 4 2 1 35 35 H 1.09007 * 109.46788 * 299.99965 * 5 2 1 36 36 H 1.08997 * 109.47284 * 179.97438 * 5 2 1 37 37 H 1.09000 * 109.46556 * 60.00625 * 6 5 2 38 38 H 1.08997 * 109.47197 * 300.00300 * 6 5 2 39 39 H 1.09002 * 109.46812 * 59.99970 * 7 6 5 40 40 H 1.09007 * 109.47025 * 300.00751 * 7 6 5 41 41 H 1.08000 * 120.00792 * 0.04206 * 13 12 11 42 42 H 1.08008 * 119.96231 * 180.02562 * 14 13 12 43 43 H 1.09001 * 109.47058 * 181.62737 * 18 17 15 44 44 H 0.96699 * 113.99642 * 299.99853 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4840 1.7565 0.0000 4 6 2.4840 -0.8783 -1.5211 5 6 2.4840 -0.8782 1.5211 6 6 1.9739 -2.3207 1.5212 7 6 2.4834 -3.0418 2.7708 8 16 1.8793 -4.7522 2.7705 9 8 2.4928 -5.4976 1.7277 10 8 0.4719 -4.7840 2.9634 11 8 2.4475 -5.3559 4.0468 12 6 1.8154 -4.9490 5.1803 13 6 2.2569 -3.8213 5.8541 14 6 1.6141 -3.4088 7.0062 15 6 0.5260 -4.1178 7.4851 16 9 -0.1040 -3.7096 8.6083 17 6 0.0860 -5.2483 6.8172 18 6 -1.0950 -6.0225 7.3435 19 8 -2.2523 -5.1843 7.3432 20 14 -0.7402 -6.5908 9.0818 21 1 -1.8391 -7.4742 9.5478 22 1 0.5414 -7.3407 9.1056 23 1 -0.6400 -5.4107 9.9777 24 6 0.7267 -5.6638 5.6642 25 9 0.2948 -6.7636 5.0094 26 1 -0.3632 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 3.5740 1.7564 -0.0005 30 1 2.1207 2.2703 -0.8900 31 1 2.1208 2.2702 0.8900 32 1 2.1207 -1.9059 -1.5211 33 1 2.1207 -0.3645 -2.4111 34 1 3.5740 -0.8787 -1.5209 35 1 2.1207 -0.3643 2.4111 36 1 3.5740 -0.8786 1.5209 37 1 2.3373 -2.8346 0.6313 38 1 0.8840 -2.3207 1.5212 39 1 2.1198 -2.5278 3.6605 40 1 3.5735 -3.0418 2.7712 41 1 3.1029 -3.2645 5.4789 42 1 1.9583 -2.5296 7.5307 43 1 -1.2740 -6.8893 6.7073 44 1 -2.1640 -4.3918 7.8901 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_9576490_14927650.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 13:06:26 Heat of formation + Delta-G solvation = -241.039400 kcal Electronic energy + Delta-G solvation = -30245.396253 eV Core-core repulsion = 25664.614430 eV Total energy + Delta-G solvation = -4580.781824 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 368.093 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -50.67436 -50.40017 -42.28076 -39.77173 -38.34666 -37.79523 -37.22890 -36.08907 -33.12623 -31.31367 -29.81050 -28.64724 -28.48021 -28.46176 -27.46431 -25.02768 -24.05062 -22.96577 -21.76356 -19.76969 -19.69454 -19.63036 -18.90557 -18.28940 -18.03050 -17.50866 -17.17492 -16.97044 -16.63547 -16.43271 -16.00113 -15.93106 -15.70410 -15.29882 -15.01780 -14.80395 -14.51918 -14.34205 -14.25631 -14.17214 -14.14501 -13.84273 -13.75844 -13.71175 -13.49706 -13.32798 -13.30828 -13.25563 -13.21845 -13.16981 -13.16059 -13.14092 -12.69187 -12.26685 -12.08964 -11.98098 -11.81525 -11.01780 -10.91031 -10.87496 -10.66745 -10.24103 -10.19957 -1.34087 -0.69712 -0.56662 0.76577 0.90175 1.34615 1.37170 1.61348 1.63823 1.76783 1.78284 1.82921 2.25113 2.42527 2.53954 2.60814 2.74790 2.85023 3.10185 3.26096 3.33306 3.36274 3.42848 3.59117 3.89167 3.97379 4.10941 4.16923 4.24369 4.30866 4.36900 4.38346 4.53668 4.59586 4.64303 4.65444 4.69387 4.69878 4.71033 4.72552 4.80660 5.12354 5.14616 5.40069 5.48603 5.50732 6.28906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.454 4.454 2 Si 1.003 2.997 3 C -0.449 4.449 4 C -0.454 4.454 5 C -0.405 4.405 6 C -0.102 4.102 7 C -0.646 4.646 8 S 2.575 3.425 9 O -0.916 6.916 10 O -0.941 6.941 11 O -0.653 6.653 12 C 0.026 3.974 13 C -0.074 4.074 14 C -0.136 4.136 15 C 0.145 3.855 16 F -0.113 7.113 17 C -0.174 4.174 18 C -0.085 4.085 19 O -0.524 6.524 20 Si 0.943 3.057 21 H -0.237 1.237 22 H -0.245 1.245 23 H -0.235 1.235 24 C 0.180 3.820 25 F -0.101 7.101 26 H 0.069 0.931 27 H 0.070 0.930 28 H 0.070 0.930 29 H 0.068 0.932 30 H 0.070 0.930 31 H 0.068 0.932 32 H 0.070 0.930 33 H 0.070 0.930 34 H 0.069 0.931 35 H 0.081 0.919 36 H 0.082 0.918 37 H 0.083 0.917 38 H 0.084 0.916 39 H 0.136 0.864 40 H 0.142 0.858 41 H 0.166 0.834 42 H 0.167 0.833 43 H 0.132 0.868 44 H 0.376 0.624 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.803 5.866 3.405 7.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.561 4.561 2 Si 1.200 2.800 3 C -0.557 4.557 4 C -0.562 4.562 5 C -0.491 4.491 6 C -0.141 4.141 7 C -0.774 4.774 8 S 2.672 3.328 9 O -0.914 6.914 10 O -0.939 6.939 11 O -0.611 6.611 12 C -0.018 4.018 13 C -0.094 4.094 14 C -0.155 4.155 15 C 0.124 3.876 16 F -0.091 7.091 17 C -0.176 4.176 18 C -0.194 4.194 19 O -0.329 6.329 20 Si 0.760 3.240 21 H -0.160 1.160 22 H -0.168 1.168 23 H -0.157 1.157 24 C 0.158 3.842 25 F -0.079 7.079 26 H 0.088 0.912 27 H 0.089 0.911 28 H 0.089 0.911 29 H 0.087 0.913 30 H 0.089 0.911 31 H 0.087 0.913 32 H 0.089 0.911 33 H 0.089 0.911 34 H 0.089 0.911 35 H 0.100 0.900 36 H 0.101 0.899 37 H 0.102 0.898 38 H 0.102 0.898 39 H 0.154 0.846 40 H 0.160 0.840 41 H 0.184 0.816 42 H 0.184 0.816 43 H 0.150 0.850 44 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges 2.554 4.320 3.655 6.208 hybrid contribution 0.459 0.979 -0.205 1.101 sum 3.013 5.299 3.450 7.004 Atomic orbital electron populations 1.26179 1.20667 1.04648 1.04617 0.79314 0.67273 0.67007 0.66454 1.26103 1.06227 1.18812 1.04530 1.26183 1.06365 1.08201 1.15408 1.26163 1.06281 1.00309 1.16355 1.20994 1.01807 0.97026 0.94252 1.30935 1.13745 1.23887 1.08816 1.06171 0.74943 0.77635 0.74084 1.93677 1.77510 1.67683 1.52500 1.93691 1.30989 1.86117 1.83135 1.85823 1.69707 1.76462 1.29151 1.17968 0.95610 0.98447 0.89727 1.21178 0.99735 0.93919 0.94536 1.21097 0.95246 1.02100 0.97060 1.17270 0.92746 0.93418 0.84137 1.91549 1.80661 1.89261 1.47655 1.20377 1.02053 0.98777 0.96430 1.25054 0.84375 0.96617 1.13316 1.86618 1.34851 1.38462 1.73018 0.85856 0.82148 0.82017 0.73979 1.16003 1.16843 1.15737 1.17006 0.92039 0.85048 0.90135 1.91608 1.88231 1.48854 1.79163 0.91164 0.91082 0.91099 0.91254 0.91126 0.91260 0.91099 0.91079 0.91144 0.89989 0.89941 0.89805 0.89788 0.84599 0.83972 0.81634 0.81590 0.85029 0.77577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.45 0.89 8.65 101.05 0.87 1.77 16 2 Si 1.00 -3.51 12.19 -169.99 -2.07 -5.58 16 3 C -0.45 1.06 8.65 101.05 0.87 1.93 16 4 C -0.45 0.86 8.65 101.05 0.87 1.73 16 5 C -0.41 1.42 4.45 37.16 0.17 1.59 16 6 C -0.10 0.23 4.59 -26.73 -0.12 0.11 16 7 C -0.65 1.87 5.46 37.16 0.20 2.07 16 8 S 2.58 4.36 5.16 -107.50 -0.56 3.81 16 9 O -0.92 -4.76 18.09 -67.04 -1.21 -5.97 16 10 O -0.94 -3.90 15.95 -67.03 -1.07 -4.96 16 11 O -0.65 -0.94 9.92 -52.10 -0.52 -1.46 16 12 C 0.03 0.01 4.80 -39.19 -0.19 -0.18 16 13 C -0.07 0.25 8.46 -39.45 -0.33 -0.08 16 14 C -0.14 0.53 10.02 -39.52 -0.40 0.13 16 15 C 0.14 -0.24 6.54 -39.42 -0.26 -0.49 16 16 F -0.11 0.21 13.05 2.25 0.03 0.24 16 17 C -0.17 -0.06 4.58 -104.51 -0.48 -0.54 16 18 C -0.08 -0.02 2.79 36.01 0.10 0.08 16 19 O -0.52 -0.43 12.88 -35.23 -0.45 -0.88 16 20 Si 0.94 -0.58 26.52 -169.99 -4.51 -5.09 16 21 H -0.24 -0.08 7.11 56.52 0.40 0.32 16 22 H -0.25 0.01 7.11 56.52 0.40 0.41 16 23 H -0.23 0.21 6.18 56.52 0.35 0.56 16 24 C 0.18 0.36 6.43 -39.30 -0.25 0.11 16 25 F -0.10 -0.39 15.65 2.25 0.04 -0.35 16 26 H 0.07 -0.15 7.96 -51.93 -0.41 -0.56 16 27 H 0.07 -0.12 7.96 -51.93 -0.41 -0.53 16 28 H 0.07 -0.12 7.79 -51.93 -0.40 -0.53 16 29 H 0.07 -0.16 7.96 -51.93 -0.41 -0.58 16 30 H 0.07 -0.14 7.96 -51.93 -0.41 -0.55 16 31 H 0.07 -0.17 7.96 -51.93 -0.41 -0.58 16 32 H 0.07 -0.12 7.79 -51.93 -0.40 -0.52 16 33 H 0.07 -0.12 7.96 -51.93 -0.41 -0.53 16 34 H 0.07 -0.14 7.96 -51.93 -0.41 -0.55 16 35 H 0.08 -0.35 7.96 -51.92 -0.41 -0.76 16 36 H 0.08 -0.34 7.96 -51.93 -0.41 -0.75 16 37 H 0.08 -0.22 7.79 -51.93 -0.40 -0.63 16 38 H 0.08 -0.24 7.79 -51.93 -0.40 -0.64 16 39 H 0.14 -0.73 6.61 -51.92 -0.34 -1.07 16 40 H 0.14 -0.72 8.14 -51.92 -0.42 -1.15 16 41 H 0.17 -1.18 7.49 -52.49 -0.39 -1.57 16 42 H 0.17 -1.15 8.06 -52.48 -0.42 -1.57 16 43 H 0.13 0.00 6.95 -51.93 -0.36 -0.36 16 44 H 0.38 -0.86 7.19 45.56 0.33 -0.53 16 LS Contribution 381.16 15.07 5.74 5.74 Total: 0.00 -9.63 381.16 -9.32 -18.95 By element: Atomic # 1 Polarization: -6.87 SS G_CDS: -5.80 Total: -12.68 kcal Atomic # 6 Polarization: 7.16 SS G_CDS: 1.06 Total: 8.22 kcal Atomic # 8 Polarization: -10.02 SS G_CDS: -3.25 Total: -13.27 kcal Atomic # 9 Polarization: -0.17 SS G_CDS: 0.06 Total: -0.11 kcal Atomic # 14 Polarization: -4.09 SS G_CDS: -6.58 Total: -10.67 kcal Atomic # 16 Polarization: 4.36 SS G_CDS: -0.56 Total: 3.81 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -9.63 -9.32 -18.95 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_9576490_14927650.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -222.084 kcal (2) G-P(sol) polarization free energy of solvation -9.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -231.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.955 kcal (6) G-S(sol) free energy of system = (1) + (5) -241.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds