Wall clock time and date at job start Mon Mar 8 2021 13:06:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86299 * 1 3 3 C 1.86301 * 109.47227 * 2 1 4 4 C 1.86301 * 109.47245 * 239.99837 * 2 1 3 5 5 C 1.86301 * 109.47246 * 120.00029 * 2 1 3 6 6 C 1.53003 * 109.47213 * 59.99493 * 5 2 1 7 7 C 1.53003 * 109.47329 * 180.02562 * 6 5 2 8 8 S 1.81393 * 109.47165 * 180.02562 * 7 6 5 9 9 O 1.42104 * 110.54227 * 68.37849 * 8 7 6 10 10 O 1.42094 * 110.54440 * 291.62798 * 8 7 6 11 11 O 1.52195 * 104.44880 * 179.97438 * 8 7 6 12 12 C 1.36009 * 114.00018 * 75.00139 * 11 8 7 13 13 C 1.38588 * 120.03605 * 269.97859 * 12 11 8 14 14 C 1.38231 * 119.99097 * 180.02562 * 13 12 11 15 15 C 1.38414 * 120.07286 * 359.72785 * 14 13 12 16 16 F 1.35099 * 119.96661 * 180.27521 * 15 14 13 17 17 C 1.38487 * 120.06920 * 0.54407 * 15 14 13 18 18 C 1.50701 * 119.99497 * 179.72398 * 17 15 14 19 19 O 1.42899 * 109.46951 * 61.62880 * 18 17 15 20 20 Si 1.86299 * 109.47240 * 301.62655 * 18 17 15 21 21 H 1.48496 * 109.46937 * 186.00016 * 20 18 17 22 22 H 1.48501 * 109.47239 * 305.99856 * 20 18 17 23 23 H 1.48500 * 109.47050 * 66.00324 * 20 18 17 24 24 C 1.38290 * 120.00889 * 359.45694 * 17 15 14 25 25 F 1.35094 * 120.03805 * 180.24820 * 24 17 15 26 26 H 1.09003 * 109.46552 * 299.99955 * 1 2 3 27 27 H 1.08996 * 109.47054 * 60.00024 * 1 2 3 28 28 H 1.08995 * 109.47343 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.46995 * 180.02562 * 3 2 1 30 30 H 1.08996 * 109.47084 * 299.99957 * 3 2 1 31 31 H 1.08995 * 109.47017 * 60.00405 * 3 2 1 32 32 H 1.09003 * 109.47114 * 300.00271 * 4 2 1 33 33 H 1.08996 * 109.46981 * 60.00094 * 4 2 1 34 34 H 1.08997 * 109.47438 * 180.02562 * 4 2 1 35 35 H 1.09007 * 109.46788 * 299.99965 * 5 2 1 36 36 H 1.08997 * 109.47284 * 179.97438 * 5 2 1 37 37 H 1.09000 * 109.46556 * 60.00625 * 6 5 2 38 38 H 1.08997 * 109.47197 * 300.00300 * 6 5 2 39 39 H 1.09002 * 109.46812 * 59.99970 * 7 6 5 40 40 H 1.09007 * 109.47025 * 300.00751 * 7 6 5 41 41 H 1.08000 * 120.00792 * 0.04206 * 13 12 11 42 42 H 1.08008 * 119.96231 * 180.02562 * 14 13 12 43 43 H 1.09001 * 109.47058 * 181.62737 * 18 17 15 44 44 H 0.96699 * 113.99642 * 299.99853 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4840 1.7565 0.0000 4 6 2.4840 -0.8783 -1.5211 5 6 2.4840 -0.8782 1.5211 6 6 1.9739 -2.3207 1.5212 7 6 2.4834 -3.0418 2.7708 8 16 1.8793 -4.7522 2.7705 9 8 2.4928 -5.4976 1.7277 10 8 0.4719 -4.7840 2.9634 11 8 2.4475 -5.3559 4.0468 12 6 1.8154 -4.9490 5.1803 13 6 2.2569 -3.8213 5.8541 14 6 1.6141 -3.4088 7.0062 15 6 0.5260 -4.1178 7.4851 16 9 -0.1040 -3.7096 8.6083 17 6 0.0860 -5.2483 6.8172 18 6 -1.0950 -6.0225 7.3435 19 8 -2.2523 -5.1843 7.3432 20 14 -0.7402 -6.5908 9.0818 21 1 -1.8391 -7.4742 9.5478 22 1 0.5414 -7.3407 9.1056 23 1 -0.6400 -5.4107 9.9777 24 6 0.7267 -5.6638 5.6642 25 9 0.2948 -6.7636 5.0094 26 1 -0.3632 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 3.5740 1.7564 -0.0005 30 1 2.1207 2.2703 -0.8900 31 1 2.1208 2.2702 0.8900 32 1 2.1207 -1.9059 -1.5211 33 1 2.1207 -0.3645 -2.4111 34 1 3.5740 -0.8787 -1.5209 35 1 2.1207 -0.3643 2.4111 36 1 3.5740 -0.8786 1.5209 37 1 2.3373 -2.8346 0.6313 38 1 0.8840 -2.3207 1.5212 39 1 2.1198 -2.5278 3.6605 40 1 3.5735 -3.0418 2.7712 41 1 3.1029 -3.2645 5.4789 42 1 1.9583 -2.5296 7.5307 43 1 -1.2740 -6.8893 6.7073 44 1 -2.1640 -4.3918 7.8901 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_9576490_14927650.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 13:06:25 Heat of formation + Delta-G solvation = -239.626496 kcal Electronic energy + Delta-G solvation = -30245.334985 eV Core-core repulsion = 25664.614430 eV Total energy + Delta-G solvation = -4580.720556 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 368.093 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -50.50115 -50.49135 -42.22761 -39.68342 -38.50690 -37.76730 -37.38376 -35.85298 -32.99160 -31.18080 -29.60515 -28.42098 -28.29748 -28.24390 -27.36364 -24.95208 -23.90377 -22.74656 -21.70807 -19.75691 -19.62803 -19.56198 -18.92900 -18.27638 -18.02921 -17.41840 -17.10198 -16.84012 -16.68780 -16.34342 -15.89855 -15.78914 -15.66463 -15.29336 -14.84608 -14.75127 -14.36186 -14.19269 -14.13275 -13.98547 -13.95469 -13.75975 -13.58068 -13.56384 -13.48467 -13.39521 -13.35371 -13.13799 -13.11060 -13.03306 -12.96225 -12.95728 -12.63443 -12.24628 -11.83386 -11.79068 -11.74378 -10.97333 -10.69126 -10.66788 -10.42102 -10.15220 -10.06946 -1.30161 -0.56331 -0.45426 0.78624 0.93055 1.37527 1.40079 1.73622 1.87373 1.94353 2.01956 2.04482 2.37676 2.44504 2.70678 2.75900 2.80391 2.98210 3.27136 3.45709 3.47948 3.56352 3.65536 3.79984 4.04044 4.19856 4.36549 4.42914 4.44342 4.51958 4.56944 4.65449 4.74590 4.81607 4.82046 4.84844 4.87548 4.89261 4.90350 4.90768 5.14013 5.31345 5.49017 5.62326 5.67761 5.69094 6.43071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.476 4.476 2 Si 1.069 2.931 3 C -0.462 4.462 4 C -0.478 4.478 5 C -0.404 4.404 6 C -0.124 4.124 7 C -0.614 4.614 8 S 2.560 3.440 9 O -0.969 6.969 10 O -0.980 6.980 11 O -0.661 6.661 12 C 0.005 3.995 13 C -0.059 4.059 14 C -0.114 4.114 15 C 0.141 3.859 16 F -0.111 7.111 17 C -0.187 4.187 18 C -0.095 4.095 19 O -0.541 6.541 20 Si 0.976 3.024 21 H -0.256 1.256 22 H -0.256 1.256 23 H -0.222 1.222 24 C 0.138 3.862 25 F -0.127 7.127 26 H 0.073 0.927 27 H 0.062 0.938 28 H 0.064 0.936 29 H 0.071 0.929 30 H 0.061 0.939 31 H 0.073 0.927 32 H 0.064 0.936 33 H 0.062 0.938 34 H 0.071 0.929 35 H 0.101 0.899 36 H 0.098 0.902 37 H 0.081 0.919 38 H 0.084 0.916 39 H 0.172 0.828 40 H 0.177 0.823 41 H 0.214 0.786 42 H 0.210 0.790 43 H 0.119 0.881 44 H 0.388 0.612 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.791 8.996 5.254 11.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.581 4.581 2 Si 1.261 2.739 3 C -0.569 4.569 4 C -0.583 4.583 5 C -0.491 4.491 6 C -0.163 4.163 7 C -0.746 4.746 8 S 2.662 3.338 9 O -0.967 6.967 10 O -0.979 6.979 11 O -0.619 6.619 12 C -0.038 4.038 13 C -0.078 4.078 14 C -0.132 4.132 15 C 0.120 3.880 16 F -0.089 7.089 17 C -0.189 4.189 18 C -0.203 4.203 19 O -0.348 6.348 20 Si 0.794 3.206 21 H -0.180 1.180 22 H -0.180 1.180 23 H -0.144 1.144 24 C 0.117 3.883 25 F -0.105 7.105 26 H 0.092 0.908 27 H 0.081 0.919 28 H 0.083 0.917 29 H 0.090 0.910 30 H 0.081 0.919 31 H 0.092 0.908 32 H 0.083 0.917 33 H 0.082 0.918 34 H 0.091 0.909 35 H 0.120 0.880 36 H 0.117 0.883 37 H 0.100 0.900 38 H 0.103 0.897 39 H 0.190 0.810 40 H 0.194 0.806 41 H 0.231 0.769 42 H 0.227 0.773 43 H 0.137 0.863 44 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges 4.509 7.414 5.475 10.260 hybrid contribution -0.174 0.095 -0.795 0.820 sum 4.334 7.508 4.680 9.852 Atomic orbital electron populations 1.26467 1.23029 1.04192 1.04435 0.78303 0.64790 0.65500 0.65315 1.26260 1.06519 1.19718 1.04373 1.26494 1.06688 1.08280 1.16852 1.26144 1.07394 0.98795 1.16737 1.21244 1.02321 0.98142 0.94554 1.30749 1.15687 1.17964 1.10240 1.06449 0.74173 0.79791 0.73373 1.93601 1.77915 1.70689 1.54507 1.93636 1.33388 1.87465 1.83376 1.85775 1.69235 1.77483 1.29432 1.18446 0.95730 0.99828 0.89810 1.21770 1.00162 0.92141 0.93740 1.21625 0.93195 1.02215 0.96207 1.17466 0.93464 0.92957 0.84076 1.91553 1.80814 1.89068 1.47492 1.20408 1.02108 0.99878 0.96556 1.25172 0.84512 0.96492 1.14113 1.86578 1.35396 1.39230 1.73642 0.85394 0.80614 0.81609 0.72983 1.17972 1.17981 1.14387 1.17510 0.93887 0.85570 0.91382 1.91526 1.88804 1.50334 1.79883 0.90810 0.91851 0.91701 0.90968 0.91937 0.90832 0.91701 0.91828 0.90944 0.87998 0.88292 0.90011 0.89739 0.81007 0.80565 0.76908 0.77261 0.86286 0.76207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.48 1.85 8.65 113.37 0.98 2.83 16 2 Si 1.07 -8.71 12.19 68.60 0.84 -7.88 16 3 C -0.46 2.81 8.65 113.37 0.98 3.79 16 4 C -0.48 1.68 8.65 113.37 0.98 2.66 16 5 C -0.40 4.20 4.45 71.98 0.32 4.52 16 6 C -0.12 0.79 4.59 30.60 0.14 0.93 16 7 C -0.61 5.32 5.46 71.98 0.39 5.71 16 8 S 2.56 11.18 5.16 -56.49 -0.29 10.89 16 9 O -0.97 -12.46 18.09 -118.57 -2.15 -14.60 16 10 O -0.98 -10.46 15.95 -118.57 -1.89 -12.36 16 11 O -0.66 -2.41 9.92 -62.75 -0.62 -3.03 16 12 C 0.00 0.00 4.80 22.52 0.11 0.11 16 13 C -0.06 0.60 8.46 22.35 0.19 0.79 16 14 C -0.11 1.32 10.02 22.31 0.22 1.54 16 15 C 0.14 -0.66 6.54 22.37 0.15 -0.52 16 16 F -0.11 0.61 13.05 44.97 0.59 1.19 16 17 C -0.19 -0.32 4.58 -19.79 -0.09 -0.41 16 18 C -0.09 -0.23 2.79 71.24 0.20 -0.03 16 19 O -0.54 -1.72 12.88 -148.98 -1.92 -3.63 16 20 Si 0.98 -0.29 26.52 68.60 1.82 1.53 16 21 H -0.26 -0.59 7.11 99.48 0.71 0.12 16 22 H -0.26 -0.29 7.11 99.48 0.71 0.42 16 23 H -0.22 0.58 6.18 99.48 0.61 1.19 16 24 C 0.14 0.82 6.43 22.45 0.14 0.96 16 25 F -0.13 -1.50 15.65 44.97 0.70 -0.80 16 26 H 0.07 -0.35 7.96 -2.39 -0.02 -0.37 16 27 H 0.06 -0.16 7.96 -2.39 -0.02 -0.18 16 28 H 0.06 -0.18 7.79 -2.39 -0.02 -0.20 16 29 H 0.07 -0.46 7.96 -2.39 -0.02 -0.48 16 30 H 0.06 -0.27 7.96 -2.39 -0.02 -0.29 16 31 H 0.07 -0.49 7.96 -2.39 -0.02 -0.51 16 32 H 0.06 -0.16 7.79 -2.39 -0.02 -0.18 16 33 H 0.06 -0.15 7.96 -2.39 -0.02 -0.16 16 34 H 0.07 -0.29 7.96 -2.39 -0.02 -0.31 16 35 H 0.10 -1.38 7.96 -2.38 -0.02 -1.40 16 36 H 0.10 -1.26 7.96 -2.39 -0.02 -1.28 16 37 H 0.08 -0.48 7.79 -2.39 -0.02 -0.50 16 38 H 0.08 -0.54 7.79 -2.39 -0.02 -0.56 16 39 H 0.17 -2.70 6.61 -2.39 -0.02 -2.71 16 40 H 0.18 -2.61 8.14 -2.39 -0.02 -2.63 16 41 H 0.21 -4.33 7.49 -2.91 -0.02 -4.35 16 42 H 0.21 -4.20 8.06 -2.91 -0.02 -4.23 16 43 H 0.12 0.46 6.95 -2.39 -0.02 0.45 16 44 H 0.39 -1.52 7.19 -74.06 -0.53 -2.05 16 Total: 0.00 -28.96 381.16 2.95 -26.01 By element: Atomic # 1 Polarization: -21.36 SS G_CDS: 1.15 Total: -20.20 kcal Atomic # 6 Polarization: 18.16 SS G_CDS: 4.72 Total: 22.88 kcal Atomic # 8 Polarization: -27.05 SS G_CDS: -6.58 Total: -33.62 kcal Atomic # 9 Polarization: -0.90 SS G_CDS: 1.29 Total: 0.40 kcal Atomic # 14 Polarization: -9.00 SS G_CDS: 2.66 Total: -6.35 kcal Atomic # 16 Polarization: 11.18 SS G_CDS: -0.29 Total: 10.89 kcal Total: -28.96 2.95 -26.01 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_9576490_14927650.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -213.617 kcal (2) G-P(sol) polarization free energy of solvation -28.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -242.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -26.009 kcal (6) G-S(sol) free energy of system = (1) + (5) -239.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds