Wall clock time and date at job start Mon Mar 8 2021 13:44:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42896 * 1 3 3 Si 1.86296 * 109.47137 * 2 1 4 4 C 1.50699 * 109.47020 * 120.00085 * 2 1 3 5 5 C 1.38440 * 119.99498 * 293.46327 * 4 2 1 6 6 F 1.35095 * 119.96449 * 359.97438 * 5 4 2 7 7 C 1.38459 * 120.07357 * 179.97438 * 5 4 2 8 8 C 1.38193 * 120.06746 * 359.78667 * 7 5 4 9 9 C 1.38638 * 119.99335 * 0.44550 * 8 7 5 10 10 O 1.35997 * 120.03489 * 179.81475 * 9 8 7 11 11 S 1.52205 * 113.99647 * 269.72448 * 10 9 8 12 12 O 1.42097 * 104.27656 * 318.92343 * 11 10 9 13 13 O 1.42105 * 104.27730 * 191.07360 * 11 10 9 14 14 C 1.81394 * 104.45258 * 75.00164 * 11 10 9 15 15 H 1.08998 * 112.84652 * 309.66310 * 14 11 10 16 16 C 1.53777 * 113.61479 * 80.86189 * 14 11 10 17 17 C 1.54053 * 86.98410 * 140.01931 * 16 14 11 18 18 H 1.09003 * 113.70017 * 220.00808 * 17 16 14 19 19 O 1.42900 * 113.61433 * 89.11561 * 17 16 14 20 20 C 1.42901 * 114.00298 * 112.50809 * 19 17 16 21 21 C 1.50697 * 109.47433 * 180.02562 * 20 19 17 22 22 C 1.38237 * 120.00357 * 269.72857 * 21 20 19 23 23 C 1.38230 * 120.00131 * 179.78641 * 22 21 20 24 24 C 1.38230 * 120.00202 * 0.46294 * 23 22 21 25 25 C 1.38241 * 119.99835 * 359.76810 * 24 23 22 26 26 C 1.38230 * 119.99945 * 0.02562 * 25 24 23 27 27 C 1.53783 * 113.61266 * 178.47396 * 14 11 10 28 28 C 1.38337 * 119.99681 * 113.44189 * 4 2 1 29 29 F 1.35100 * 120.03633 * 0.02562 * 28 4 2 30 30 H 0.96699 * 113.99869 * 300.00303 * 1 2 3 31 31 H 1.09003 * 109.47109 * 240.00059 * 2 1 3 32 32 H 1.48508 * 109.99965 * 183.70194 * 3 2 1 33 33 H 1.48502 * 110.00192 * 305.01842 * 3 2 1 34 34 H 1.08002 * 119.96709 * 180.02562 * 7 5 4 35 35 H 1.08007 * 120.00130 * 180.23339 * 8 7 5 36 36 H 1.08995 * 113.61204 * 254.61046 * 16 14 11 37 37 H 1.09002 * 113.61767 * 25.52028 * 16 14 11 38 38 H 1.09001 * 109.47055 * 300.00421 * 20 19 17 39 39 H 1.09000 * 109.47069 * 60.00341 * 20 19 17 40 40 H 1.08003 * 119.99198 * 0.02562 * 22 21 20 41 41 H 1.07994 * 119.99746 * 180.25304 * 23 22 21 42 42 H 1.07996 * 120.00332 * 179.79022 * 24 23 22 43 43 H 1.08001 * 120.00204 * 180.02562 * 25 24 23 44 44 H 1.07997 * 120.00225 * 179.97438 * 26 25 24 45 45 H 1.08995 * 113.61604 * 334.47635 * 27 14 11 46 46 H 1.08998 * 113.61787 * 105.38540 * 27 14 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9313 -0.7104 1.2304 5 6 1.7119 -0.1638 2.4833 6 9 1.0479 1.0068 2.6019 7 6 2.1722 -0.8154 3.6149 8 6 2.8478 -2.0151 3.4964 9 6 3.0733 -2.5626 2.2429 10 8 3.7414 -3.7413 2.1251 11 16 5.2485 -3.5867 1.9796 12 8 5.4041 -2.4809 1.1009 13 8 5.7000 -4.8831 1.6125 14 6 5.8230 -3.1610 3.6467 15 1 5.2612 -2.3393 4.0909 16 6 5.9738 -4.3772 4.5755 17 6 7.2598 -3.7127 5.1026 18 1 8.0756 -4.4142 5.2773 19 8 7.0384 -2.8332 6.2069 20 6 7.5991 -3.2934 7.4381 21 6 7.3065 -2.2946 8.5279 22 6 8.1959 -1.2670 8.7807 23 6 7.9253 -0.3482 9.7774 24 6 6.7700 -0.4625 10.5277 25 6 5.8829 -1.4929 10.2781 26 6 6.1514 -2.4092 9.2786 27 6 7.3479 -2.9903 3.7479 28 6 2.6112 -1.9089 1.1080 29 9 2.8257 -2.4429 -0.1144 30 1 -0.3933 0.4417 0.7650 31 1 1.7923 -0.5138 -0.8900 32 1 3.5322 1.7711 -0.0901 33 1 1.4643 2.5022 -1.1428 34 1 1.9997 -0.3876 4.5915 35 1 3.2031 -2.5243 4.3801 36 1 5.1841 -4.4567 5.3225 37 1 6.1517 -5.3126 4.0449 38 1 7.1595 -4.2558 7.7003 39 1 8.6777 -3.4048 7.3270 40 1 9.1003 -1.1798 8.1969 41 1 8.6182 0.4570 9.9721 42 1 6.5603 0.2534 11.3087 43 1 4.9800 -1.5820 10.8641 44 1 5.4585 -3.2144 9.0839 45 1 7.9008 -3.5472 2.9914 46 1 7.6667 -1.9510 3.8271 There are 72 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 72 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_9576490_15608174.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 13:44:58 Heat of formation + Delta-G solvation = -162.982504 kcal Electronic energy + Delta-G solvation = -37911.174643 eV Core-core repulsion = 32498.633829 eV Total energy + Delta-G solvation = -5412.540814 eV No. of doubly occupied orbitals = 72 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 413.092 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -50.65453 -50.38642 -42.25138 -40.94668 -40.08646 -39.73526 -38.38924 -37.77574 -37.26519 -37.17038 -33.10101 -32.81226 -31.92162 -31.28680 -27.86601 -27.39340 -27.22623 -26.58330 -24.97571 -23.88299 -23.60889 -22.41176 -22.05577 -21.23174 -19.81459 -19.68565 -19.59807 -18.98258 -18.61989 -18.05667 -17.89563 -17.55434 -17.47354 -17.19091 -16.81300 -16.77375 -16.66167 -16.43380 -16.15886 -16.00202 -15.82745 -15.64289 -15.45103 -15.34150 -14.85160 -14.61335 -14.42620 -14.23951 -14.21948 -14.13603 -14.02645 -13.75818 -13.72538 -13.63560 -13.43624 -13.36764 -13.31540 -13.26430 -13.07885 -12.58092 -12.33339 -12.20148 -12.10404 -12.03042 -11.92365 -11.37504 -10.96230 -10.77023 -10.24420 -10.17635 -9.93515 -9.88317 -5.01958 -1.32145 -0.65688 -0.53896 0.21068 0.38918 0.74117 1.08471 1.54372 1.68738 1.91499 2.23262 2.27995 2.38477 2.57722 2.63486 2.81093 2.86979 2.89487 3.09042 3.16698 3.24899 3.33538 3.38437 3.49847 3.62184 3.74872 3.76817 3.95567 3.99284 3.99799 4.12788 4.16440 4.18430 4.19057 4.24683 4.28411 4.33852 4.38941 4.42245 4.49445 4.54898 4.57015 4.61021 4.63577 4.66966 4.93495 5.01048 5.15478 5.42762 5.50918 5.52682 5.93891 5.98325 6.31278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.528 6.528 2 C -0.073 4.073 3 Si 0.684 3.316 4 C -0.173 4.173 5 C 0.150 3.850 6 F -0.100 7.100 7 C -0.134 4.134 8 C -0.071 4.071 9 C 0.026 3.974 10 O -0.651 6.651 11 S 2.585 3.415 12 O -0.944 6.944 13 O -0.914 6.914 14 C -0.638 4.638 15 H 0.159 0.841 16 C -0.130 4.130 17 C 0.079 3.921 18 H 0.090 0.910 19 O -0.356 6.356 20 C 0.101 3.899 21 C -0.096 4.096 22 C -0.098 4.098 23 C -0.123 4.123 24 C -0.112 4.112 25 C -0.123 4.123 26 C -0.099 4.099 27 C -0.107 4.107 28 C 0.176 3.824 29 F -0.104 7.104 30 H 0.379 0.621 31 H 0.128 0.872 32 H -0.245 1.245 33 H -0.238 1.238 34 H 0.168 0.832 35 H 0.166 0.834 36 H 0.096 0.904 37 H 0.114 0.886 38 H 0.062 0.938 39 H 0.063 0.937 40 H 0.123 0.877 41 H 0.125 0.875 42 H 0.124 0.876 43 H 0.125 0.875 44 H 0.123 0.877 45 H 0.106 0.894 46 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.505 2.383 9.094 9.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.333 6.333 2 C -0.182 4.182 3 Si 0.582 3.418 4 C -0.176 4.176 5 C 0.129 3.871 6 F -0.079 7.079 7 C -0.153 4.153 8 C -0.091 4.091 9 C -0.017 4.017 10 O -0.609 6.609 11 S 2.681 3.319 12 O -0.943 6.943 13 O -0.912 6.912 14 C -0.746 4.746 15 H 0.177 0.823 16 C -0.169 4.169 17 C 0.019 3.981 18 H 0.108 0.892 19 O -0.275 6.275 20 C 0.025 3.975 21 C -0.096 4.096 22 C -0.116 4.116 23 C -0.141 4.141 24 C -0.130 4.130 25 C -0.141 4.141 26 C -0.117 4.117 27 C -0.146 4.146 28 C 0.154 3.846 29 F -0.082 7.082 30 H 0.227 0.773 31 H 0.146 0.854 32 H -0.169 1.169 33 H -0.162 1.162 34 H 0.186 0.814 35 H 0.184 0.816 36 H 0.115 0.885 37 H 0.132 0.868 38 H 0.081 0.919 39 H 0.081 0.919 40 H 0.141 0.859 41 H 0.143 0.857 42 H 0.142 0.858 43 H 0.143 0.857 44 H 0.141 0.859 45 H 0.124 0.876 46 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 0.839 2.503 7.302 7.765 hybrid contribution 0.168 -0.813 0.203 0.855 sum 1.007 1.690 7.505 7.759 Atomic orbital electron populations 1.86596 1.15964 1.81491 1.49240 1.25089 0.85901 1.11200 0.96018 0.94921 0.81377 0.76347 0.89187 1.20354 1.04095 0.96143 0.96970 1.17189 0.94220 0.83017 0.92638 1.91388 1.77236 1.43674 1.95563 1.21107 0.99830 0.95110 0.99249 1.21193 0.97260 0.95008 0.95619 1.17963 1.05187 0.84892 0.93659 1.85787 1.44107 1.39262 1.91740 1.05935 0.73527 0.75136 0.77335 1.93669 1.83323 1.55569 1.61703 1.93666 1.77788 1.38806 1.80960 1.32190 1.09121 1.10298 1.22977 0.82321 1.23317 1.00709 0.94695 0.98170 1.22869 0.96676 0.91942 0.86581 0.89162 1.87961 1.77534 1.45758 1.16228 1.21452 0.97988 0.95493 0.82542 1.19541 0.95896 0.97269 0.96853 1.21091 0.99252 0.93856 0.97407 1.21206 0.97602 0.99198 0.96057 1.21277 0.94348 0.98020 0.99318 1.21200 0.99767 0.95102 0.98053 1.21069 0.96076 0.99114 0.95425 1.22873 0.89251 1.04680 0.97794 1.17071 0.96370 0.91122 0.80012 1.91601 1.91883 1.84905 1.39770 0.77339 0.85427 1.16886 1.16190 0.81428 0.81632 0.88501 0.86767 0.91927 0.91883 0.85884 0.85715 0.85791 0.85727 0.85930 0.87584 0.87862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.53 -0.53 12.88 -35.23 -0.45 -0.98 16 2 C -0.07 -0.08 2.78 36.01 0.10 0.02 16 3 Si 0.68 0.08 30.28 -169.99 -5.15 -5.07 16 4 C -0.17 -0.14 4.65 -104.51 -0.49 -0.62 16 5 C 0.15 -0.29 6.52 -39.43 -0.26 -0.55 16 6 F -0.10 0.33 13.52 2.25 0.03 0.37 16 7 C -0.13 0.49 10.02 -39.52 -0.40 0.10 16 8 C -0.07 0.19 8.50 -39.45 -0.34 -0.15 16 9 C 0.03 0.03 4.80 -39.19 -0.19 -0.16 16 10 O -0.65 -1.42 9.92 -52.06 -0.52 -1.93 16 11 S 2.58 5.76 5.12 -107.50 -0.55 5.21 16 12 O -0.94 -4.54 15.95 -67.04 -1.07 -5.61 16 13 O -0.91 -4.56 17.31 -67.04 -1.16 -5.72 16 14 C -0.64 1.07 3.92 -25.92 -0.10 0.97 16 15 H 0.16 -0.55 6.21 -51.93 -0.32 -0.88 16 16 C -0.13 0.33 7.49 -25.78 -0.19 0.14 16 17 C 0.08 -0.18 4.38 -25.77 -0.11 -0.30 16 18 H 0.09 -0.35 7.87 -51.93 -0.41 -0.76 16 19 O -0.36 0.31 10.26 -35.23 -0.36 -0.05 16 20 C 0.10 -0.18 5.90 36.00 0.21 0.03 16 21 C -0.10 0.04 5.51 -104.62 -0.58 -0.54 16 22 C -0.10 0.03 9.70 -39.58 -0.38 -0.35 16 23 C -0.12 0.06 10.05 -39.59 -0.40 -0.34 16 24 C -0.11 0.07 10.05 -39.58 -0.40 -0.33 16 25 C -0.12 0.09 10.05 -39.58 -0.40 -0.30 16 26 C -0.10 0.07 9.70 -39.58 -0.38 -0.32 16 27 C -0.11 0.22 7.50 -25.92 -0.19 0.02 16 28 C 0.18 0.50 6.43 -39.31 -0.25 0.25 16 29 F -0.10 -0.52 15.66 2.25 0.04 -0.49 16 30 H 0.38 -1.10 7.58 45.56 0.35 -0.75 16 31 H 0.13 0.25 6.97 -51.93 -0.36 -0.11 16 32 H -0.24 -0.66 7.11 56.52 0.40 -0.26 16 33 H -0.24 -0.58 7.11 56.52 0.40 -0.18 16 34 H 0.17 -1.14 8.06 -52.49 -0.42 -1.56 16 35 H 0.17 -0.97 7.31 -52.48 -0.38 -1.35 16 36 H 0.10 -0.37 8.14 -51.93 -0.42 -0.79 16 37 H 0.11 -0.31 7.46 -51.93 -0.39 -0.69 16 38 H 0.06 -0.18 8.08 -51.93 -0.42 -0.60 16 39 H 0.06 -0.17 8.08 -51.93 -0.42 -0.59 16 40 H 0.12 -0.20 8.06 -52.48 -0.42 -0.62 16 41 H 0.12 -0.26 8.06 -52.49 -0.42 -0.68 16 42 H 0.12 -0.29 8.06 -52.49 -0.42 -0.71 16 43 H 0.12 -0.31 8.06 -52.49 -0.42 -0.73 16 44 H 0.12 -0.28 8.06 -52.49 -0.42 -0.70 16 45 H 0.11 -0.33 8.10 -51.93 -0.42 -0.75 16 46 H 0.10 -0.24 8.14 -51.93 -0.42 -0.66 16 LS Contribution 405.37 15.07 6.11 6.11 Total: 0.00 -10.79 405.37 -13.19 -23.98 By element: Atomic # 1 Polarization: -8.03 SS G_CDS: -5.36 Total: -13.39 kcal Atomic # 6 Polarization: 2.33 SS G_CDS: -4.74 Total: -2.42 kcal Atomic # 8 Polarization: -10.73 SS G_CDS: -3.56 Total: -14.29 kcal Atomic # 9 Polarization: -0.19 SS G_CDS: 0.07 Total: -0.12 kcal Atomic # 14 Polarization: 0.08 SS G_CDS: -5.15 Total: -5.07 kcal Atomic # 16 Polarization: 5.76 SS G_CDS: -0.55 Total: 5.21 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -10.79 -13.19 -23.98 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_9576490_15608174.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -139.003 kcal (2) G-P(sol) polarization free energy of solvation -10.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.979 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds