Wall clock time and date at job start Mon Mar 8 2021 13:44:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42896 * 1 3 3 Si 1.86296 * 109.47137 * 2 1 4 4 C 1.50699 * 109.47020 * 120.00085 * 2 1 3 5 5 C 1.38440 * 119.99498 * 293.46327 * 4 2 1 6 6 F 1.35095 * 119.96449 * 359.97438 * 5 4 2 7 7 C 1.38459 * 120.07357 * 179.97438 * 5 4 2 8 8 C 1.38193 * 120.06746 * 359.78667 * 7 5 4 9 9 C 1.38638 * 119.99335 * 0.44550 * 8 7 5 10 10 O 1.35997 * 120.03489 * 179.81475 * 9 8 7 11 11 S 1.52205 * 113.99647 * 269.72448 * 10 9 8 12 12 O 1.42097 * 104.27656 * 318.92343 * 11 10 9 13 13 O 1.42105 * 104.27730 * 191.07360 * 11 10 9 14 14 C 1.81394 * 104.45258 * 75.00164 * 11 10 9 15 15 H 1.08998 * 112.84652 * 309.66310 * 14 11 10 16 16 C 1.53777 * 113.61479 * 80.86189 * 14 11 10 17 17 C 1.54053 * 86.98410 * 140.01931 * 16 14 11 18 18 H 1.09003 * 113.70017 * 220.00808 * 17 16 14 19 19 O 1.42900 * 113.61433 * 89.11561 * 17 16 14 20 20 C 1.42901 * 114.00298 * 112.50809 * 19 17 16 21 21 C 1.50697 * 109.47433 * 180.02562 * 20 19 17 22 22 C 1.38237 * 120.00357 * 269.72857 * 21 20 19 23 23 C 1.38230 * 120.00131 * 179.78641 * 22 21 20 24 24 C 1.38230 * 120.00202 * 0.46294 * 23 22 21 25 25 C 1.38241 * 119.99835 * 359.76810 * 24 23 22 26 26 C 1.38230 * 119.99945 * 0.02562 * 25 24 23 27 27 C 1.53783 * 113.61266 * 178.47396 * 14 11 10 28 28 C 1.38337 * 119.99681 * 113.44189 * 4 2 1 29 29 F 1.35100 * 120.03633 * 0.02562 * 28 4 2 30 30 H 0.96699 * 113.99869 * 300.00303 * 1 2 3 31 31 H 1.09003 * 109.47109 * 240.00059 * 2 1 3 32 32 H 1.48508 * 109.99965 * 183.70194 * 3 2 1 33 33 H 1.48502 * 110.00192 * 305.01842 * 3 2 1 34 34 H 1.08002 * 119.96709 * 180.02562 * 7 5 4 35 35 H 1.08007 * 120.00130 * 180.23339 * 8 7 5 36 36 H 1.08995 * 113.61204 * 254.61046 * 16 14 11 37 37 H 1.09002 * 113.61767 * 25.52028 * 16 14 11 38 38 H 1.09001 * 109.47055 * 300.00421 * 20 19 17 39 39 H 1.09000 * 109.47069 * 60.00341 * 20 19 17 40 40 H 1.08003 * 119.99198 * 0.02562 * 22 21 20 41 41 H 1.07994 * 119.99746 * 180.25304 * 23 22 21 42 42 H 1.07996 * 120.00332 * 179.79022 * 24 23 22 43 43 H 1.08001 * 120.00204 * 180.02562 * 25 24 23 44 44 H 1.07997 * 120.00225 * 179.97438 * 26 25 24 45 45 H 1.08995 * 113.61604 * 334.47635 * 27 14 11 46 46 H 1.08998 * 113.61787 * 105.38540 * 27 14 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9313 -0.7104 1.2304 5 6 1.7119 -0.1638 2.4833 6 9 1.0479 1.0068 2.6019 7 6 2.1722 -0.8154 3.6149 8 6 2.8478 -2.0151 3.4964 9 6 3.0733 -2.5626 2.2429 10 8 3.7414 -3.7413 2.1251 11 16 5.2485 -3.5867 1.9796 12 8 5.4041 -2.4809 1.1009 13 8 5.7000 -4.8831 1.6125 14 6 5.8230 -3.1610 3.6467 15 1 5.2612 -2.3393 4.0909 16 6 5.9738 -4.3772 4.5755 17 6 7.2598 -3.7127 5.1026 18 1 8.0756 -4.4142 5.2773 19 8 7.0384 -2.8332 6.2069 20 6 7.5991 -3.2934 7.4381 21 6 7.3065 -2.2946 8.5279 22 6 8.1959 -1.2670 8.7807 23 6 7.9253 -0.3482 9.7774 24 6 6.7700 -0.4625 10.5277 25 6 5.8829 -1.4929 10.2781 26 6 6.1514 -2.4092 9.2786 27 6 7.3479 -2.9903 3.7479 28 6 2.6112 -1.9089 1.1080 29 9 2.8257 -2.4429 -0.1144 30 1 -0.3933 0.4417 0.7650 31 1 1.7923 -0.5138 -0.8900 32 1 3.5322 1.7711 -0.0901 33 1 1.4643 2.5022 -1.1428 34 1 1.9997 -0.3876 4.5915 35 1 3.2031 -2.5243 4.3801 36 1 5.1841 -4.4567 5.3225 37 1 6.1517 -5.3126 4.0449 38 1 7.1595 -4.2558 7.7003 39 1 8.6777 -3.4048 7.3270 40 1 9.1003 -1.1798 8.1969 41 1 8.6182 0.4570 9.9721 42 1 6.5603 0.2534 11.3087 43 1 4.9800 -1.5820 10.8641 44 1 5.4585 -3.2144 9.0839 45 1 7.9008 -3.5472 2.9914 46 1 7.6667 -1.9510 3.8271 There are 72 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 72 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_9576490_15608174.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 13:44:56 Heat of formation + Delta-G solvation = -163.226406 kcal Electronic energy + Delta-G solvation = -37911.185219 eV Core-core repulsion = 32498.633829 eV Total energy + Delta-G solvation = -5412.551391 eV No. of doubly occupied orbitals = 72 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 413.092 amu Computer time = 1.44 seconds Orbital eigenvalues (eV) -50.56787 -50.45619 -42.26697 -40.76775 -39.92764 -39.70558 -38.59658 -37.79927 -37.47137 -37.00843 -33.02797 -32.64946 -31.76895 -31.21202 -27.77654 -27.30153 -27.02083 -26.43965 -24.95304 -23.81451 -23.45947 -22.25075 -22.06382 -21.10852 -19.81662 -19.68067 -19.57286 -19.03412 -18.62559 -18.08812 -17.77099 -17.42755 -17.36844 -17.12768 -16.73367 -16.68135 -16.61493 -16.41180 -16.13959 -15.94349 -15.74964 -15.59058 -15.44070 -15.24992 -14.74803 -14.50578 -14.38250 -14.25644 -14.20422 -14.11756 -13.87104 -13.70374 -13.66009 -13.61221 -13.50120 -13.46195 -13.35954 -13.16910 -13.04485 -12.63062 -12.23080 -12.12126 -12.04240 -11.84367 -11.72877 -11.27968 -10.98972 -10.55779 -10.22405 -10.10033 -9.80383 -9.74738 -5.10698 -1.35422 -0.58760 -0.48774 0.34763 0.51979 0.69043 1.01591 1.49059 1.75109 1.83039 2.32647 2.36092 2.42782 2.57850 2.71184 2.88749 2.94240 2.99660 3.23472 3.29607 3.37967 3.45845 3.52435 3.58087 3.80230 3.93161 3.95732 3.96867 4.17444 4.24139 4.32170 4.33121 4.37566 4.38405 4.42613 4.47368 4.48862 4.55251 4.63813 4.70069 4.72718 4.75406 4.79211 4.85034 4.86622 5.10550 5.17607 5.29856 5.57321 5.64913 5.66975 6.10977 6.19339 6.46392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.542 6.542 2 C -0.085 4.085 3 Si 0.773 3.227 4 C -0.187 4.187 5 C 0.156 3.844 6 F -0.087 7.087 7 C -0.111 4.111 8 C -0.059 4.059 9 C 0.004 3.996 10 O -0.659 6.659 11 S 2.574 3.426 12 O -0.983 6.983 13 O -0.956 6.956 14 C -0.610 4.610 15 H 0.184 0.816 16 C -0.131 4.131 17 C 0.081 3.919 18 H 0.108 0.892 19 O -0.367 6.367 20 C 0.100 3.900 21 C -0.106 4.106 22 C -0.113 4.113 23 C -0.136 4.136 24 C -0.125 4.125 25 C -0.133 4.133 26 C -0.107 4.107 27 C -0.119 4.119 28 C 0.132 3.868 29 F -0.132 7.132 30 H 0.395 0.605 31 H 0.107 0.893 32 H -0.284 1.284 33 H -0.272 1.272 34 H 0.214 0.786 35 H 0.206 0.794 36 H 0.118 0.882 37 H 0.113 0.887 38 H 0.076 0.924 39 H 0.070 0.930 40 H 0.130 0.870 41 H 0.134 0.866 42 H 0.136 0.864 43 H 0.139 0.861 44 H 0.138 0.862 45 H 0.111 0.889 46 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.052 2.976 12.654 13.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.350 6.350 2 C -0.193 4.193 3 Si 0.675 3.325 4 C -0.189 4.189 5 C 0.135 3.865 6 F -0.065 7.065 7 C -0.129 4.129 8 C -0.079 4.079 9 C -0.039 4.039 10 O -0.617 6.617 11 S 2.676 3.324 12 O -0.981 6.981 13 O -0.954 6.954 14 C -0.722 4.722 15 H 0.202 0.798 16 C -0.170 4.170 17 C 0.021 3.979 18 H 0.126 0.874 19 O -0.286 6.286 20 C 0.024 3.976 21 C -0.106 4.106 22 C -0.131 4.131 23 C -0.154 4.154 24 C -0.143 4.143 25 C -0.151 4.151 26 C -0.125 4.125 27 C -0.158 4.158 28 C 0.110 3.890 29 F -0.111 7.111 30 H 0.246 0.754 31 H 0.124 0.876 32 H -0.211 1.211 33 H -0.198 1.198 34 H 0.231 0.769 35 H 0.222 0.778 36 H 0.136 0.864 37 H 0.131 0.869 38 H 0.094 0.906 39 H 0.088 0.912 40 H 0.148 0.852 41 H 0.152 0.848 42 H 0.153 0.847 43 H 0.157 0.843 44 H 0.156 0.844 45 H 0.129 0.871 46 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 0.350 3.074 10.834 11.267 hybrid contribution 0.303 -0.949 -0.835 1.300 sum 0.653 2.125 9.999 10.243 Atomic orbital electron populations 1.86556 1.15922 1.82022 1.50511 1.25192 0.86114 1.12079 0.95908 0.94126 0.77565 0.73637 0.87186 1.20377 1.04670 0.95915 0.97974 1.17278 0.93813 0.83248 0.92121 1.91418 1.76851 1.42935 1.95340 1.21643 0.97191 0.93866 1.00246 1.21718 0.96098 0.95028 0.95021 1.18420 1.05827 0.84943 0.94680 1.85741 1.44032 1.39931 1.92037 1.06091 0.73362 0.73859 0.79093 1.93614 1.83843 1.56125 1.64557 1.93599 1.78583 1.40456 1.82803 1.32065 1.09519 1.11838 1.18757 0.79841 1.23453 1.01443 0.94061 0.98005 1.22890 0.97273 0.91882 0.85844 0.87394 1.87932 1.77713 1.46327 1.16633 1.21526 0.98603 0.95572 0.81912 1.19778 0.95977 0.97498 0.97364 1.21308 0.99814 0.94220 0.97764 1.21437 0.98069 0.99656 0.96263 1.21527 0.94458 0.98550 0.99733 1.21469 1.00307 0.95030 0.98277 1.21323 0.96334 0.99540 0.95340 1.23081 0.88776 1.05362 0.98554 1.17606 0.98866 0.92723 0.79777 1.91512 1.92489 1.85511 1.41562 0.75429 0.87592 1.21071 1.19785 0.76947 0.77755 0.86382 0.86877 0.90570 0.91163 0.85232 0.84817 0.84659 0.84312 0.84427 0.87054 0.87422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 -1.69 12.88 -148.98 -1.92 -3.61 16 2 C -0.08 -0.35 2.78 71.24 0.20 -0.15 16 3 Si 0.77 1.07 30.28 68.60 2.08 3.15 16 4 C -0.19 -0.50 4.65 -19.79 -0.09 -0.59 16 5 C 0.16 -0.83 6.52 22.37 0.15 -0.68 16 6 F -0.09 0.77 13.52 44.97 0.61 1.38 16 7 C -0.11 1.19 10.02 22.31 0.22 1.42 16 8 C -0.06 0.46 8.50 22.35 0.19 0.65 16 9 C 0.00 0.01 4.80 22.52 0.11 0.12 16 10 O -0.66 -3.83 9.92 -62.62 -0.62 -4.45 16 11 S 2.57 15.59 5.12 -56.49 -0.29 15.30 16 12 O -0.98 -12.28 15.95 -118.57 -1.89 -14.17 16 13 O -0.96 -11.91 17.31 -118.57 -2.05 -13.96 16 14 C -0.61 2.77 3.92 31.12 0.12 2.89 16 15 H 0.18 -1.80 6.21 -2.39 -0.01 -1.81 16 16 C -0.13 0.93 7.49 31.21 0.23 1.16 16 17 C 0.08 -0.55 4.38 31.21 0.14 -0.41 16 18 H 0.11 -1.08 7.87 -2.39 -0.02 -1.10 16 19 O -0.37 1.57 10.26 -148.98 -1.53 0.04 16 20 C 0.10 -0.56 5.90 71.23 0.42 -0.14 16 21 C -0.11 0.24 5.51 -19.87 -0.11 0.13 16 22 C -0.11 0.16 9.70 22.27 0.22 0.37 16 23 C -0.14 0.21 10.05 22.27 0.22 0.43 16 24 C -0.12 0.27 10.05 22.27 0.22 0.49 16 25 C -0.13 0.39 10.05 22.27 0.22 0.61 16 26 C -0.11 0.33 9.70 22.27 0.22 0.55 16 27 C -0.12 0.59 7.50 31.12 0.23 0.83 16 28 C 0.13 1.06 6.43 22.45 0.14 1.20 16 29 F -0.13 -1.93 15.66 44.97 0.70 -1.23 16 30 H 0.40 -2.31 7.58 -74.06 -0.56 -2.87 16 31 H 0.11 0.84 6.97 -2.39 -0.02 0.82 16 32 H -0.28 -2.16 7.11 99.48 0.71 -1.45 16 33 H -0.27 -1.78 7.11 99.48 0.71 -1.07 16 34 H 0.21 -4.14 8.06 -2.91 -0.02 -4.16 16 35 H 0.21 -3.30 7.31 -2.91 -0.02 -3.32 16 36 H 0.12 -1.29 8.14 -2.39 -0.02 -1.31 16 37 H 0.11 -0.70 7.46 -2.39 -0.02 -0.72 16 38 H 0.08 -0.65 8.08 -2.39 -0.02 -0.67 16 39 H 0.07 -0.52 8.08 -2.39 -0.02 -0.54 16 40 H 0.13 -0.49 8.06 -2.91 -0.02 -0.52 16 41 H 0.13 -0.60 8.06 -2.91 -0.02 -0.63 16 42 H 0.14 -0.74 8.06 -2.91 -0.02 -0.76 16 43 H 0.14 -0.92 8.06 -2.91 -0.02 -0.95 16 44 H 0.14 -0.95 8.06 -2.91 -0.02 -0.98 16 45 H 0.11 -0.68 8.10 -2.39 -0.02 -0.70 16 46 H 0.11 -0.61 8.14 -2.39 -0.02 -0.63 16 Total: 0.00 -30.71 405.37 -1.33 -32.04 By element: Atomic # 1 Polarization: -23.88 SS G_CDS: 0.53 Total: -23.36 kcal Atomic # 6 Polarization: 5.82 SS G_CDS: 3.06 Total: 8.87 kcal Atomic # 8 Polarization: -28.14 SS G_CDS: -8.01 Total: -36.15 kcal Atomic # 9 Polarization: -1.16 SS G_CDS: 1.31 Total: 0.15 kcal Atomic # 14 Polarization: 1.07 SS G_CDS: 2.08 Total: 3.15 kcal Atomic # 16 Polarization: 15.59 SS G_CDS: -0.29 Total: 15.30 kcal Total: -30.71 -1.33 -32.04 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_9576490_15608174.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -131.191 kcal (2) G-P(sol) polarization free energy of solvation -30.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -161.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.035 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.44 seconds