Wall clock time and date at job start Mon Mar 8 2021 13:55:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.45199 * 109.47075 * 2 1 4 4 C 1.34230 * 116.99614 * 179.97438 * 3 2 1 5 5 O 1.20824 * 120.00179 * 0.02562 * 4 3 2 6 6 C 1.50706 * 119.99717 * 179.97438 * 4 3 2 7 7 H 1.09003 * 109.46535 * 60.00663 * 6 4 3 8 8 C 1.53003 * 109.47116 * 180.02562 * 6 4 3 9 9 C 1.52994 * 109.47081 * 180.02562 * 8 6 4 10 10 C 1.52997 * 109.47125 * 299.99933 * 9 8 6 11 11 F 1.39906 * 109.47354 * 180.02562 * 10 9 8 12 12 C 1.53000 * 109.47061 * 300.00098 * 10 9 8 13 13 S 1.81404 * 109.47054 * 179.97438 * 12 10 9 14 14 O 1.42095 * 110.54413 * 291.62484 * 13 12 10 15 15 O 1.42098 * 110.54146 * 68.37710 * 13 12 10 16 16 O 1.52200 * 104.45093 * 180.02562 * 13 12 10 17 17 C 1.35996 * 114.00004 * 74.99978 * 16 13 12 18 18 C 1.38892 * 120.03955 * 269.73067 * 17 16 13 19 19 F 1.35103 * 120.03401 * 359.97438 * 18 17 16 20 20 C 1.38334 * 119.92897 * 179.72110 * 18 17 16 21 21 C 1.50702 * 119.99489 * 180.25050 * 20 18 17 22 22 O 1.42893 * 109.47282 * 30.32302 * 21 20 18 23 23 Si 1.86307 * 109.47159 * 150.32004 * 21 20 18 24 24 C 1.38442 * 120.00857 * 0.57487 * 20 18 17 25 25 F 1.35093 * 119.96440 * 179.70430 * 24 20 18 26 26 C 1.38457 * 120.07175 * 359.67402 * 24 20 18 27 27 C 1.38186 * 120.07140 * 0.04980 * 26 24 20 28 28 C 1.53003 * 109.47087 * 60.00071 * 10 9 8 29 29 C 1.52994 * 109.47081 * 299.99956 * 28 10 9 30 30 H 1.08996 * 109.47853 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47153 * 300.00058 * 1 2 3 32 32 H 1.08998 * 109.47533 * 59.99688 * 1 2 3 33 33 H 1.09002 * 109.47153 * 239.99942 * 2 1 3 34 34 H 1.09001 * 109.46832 * 120.00132 * 2 1 3 35 35 H 1.09000 * 109.47151 * 300.00236 * 8 6 4 36 36 H 1.09003 * 109.46860 * 60.00013 * 8 6 4 37 37 H 1.09003 * 109.47577 * 60.00068 * 9 8 6 38 38 H 1.09005 * 109.47167 * 180.02562 * 9 8 6 39 39 H 1.08993 * 109.47435 * 299.99626 * 12 10 9 40 40 H 1.08997 * 109.47153 * 60.00423 * 12 10 9 41 41 H 1.08996 * 109.47594 * 270.31949 * 21 20 18 42 42 H 0.96699 * 114.00569 * 59.99443 * 22 21 20 43 43 H 1.48500 * 110.00275 * 180.02562 * 23 21 20 44 44 H 1.48503 * 109.99656 * 301.32289 * 23 21 20 45 45 H 1.08001 * 119.96263 * 180.02562 * 26 24 20 46 46 H 1.07998 * 120.00506 * 179.97438 * 27 26 24 47 47 H 1.09003 * 109.46860 * 60.00328 * 28 10 9 48 48 H 1.09000 * 109.47151 * 180.02562 * 28 10 9 49 49 H 1.09003 * 109.47577 * 299.99932 * 29 28 10 50 50 H 1.09005 * 109.47167 * 179.97438 * 29 28 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5447 0.0005 5 8 4.0807 0.5865 0.0005 6 6 3.9207 2.9374 0.0000 7 1 3.5844 3.4699 0.8896 8 6 5.4487 2.8573 0.0001 9 6 6.0335 4.2711 0.0002 10 6 5.5620 5.0180 -1.2490 11 9 6.0972 6.3107 -1.2493 12 6 6.0337 4.2711 -2.4982 13 16 5.4741 5.1563 -3.9794 14 8 4.0608 5.0775 -4.1033 15 8 6.1523 6.3988 -4.1037 16 8 5.9990 4.3238 -5.1404 17 6 5.3061 3.1733 -5.3539 18 6 5.6915 2.0010 -4.7166 19 9 6.7557 2.0023 -3.8842 20 6 4.9815 0.8333 -4.9310 21 6 5.3950 -0.4382 -4.2358 22 8 5.9906 -0.1206 -2.9764 23 14 3.8970 -1.5113 -3.9612 24 6 3.8952 0.8311 -5.7892 25 9 3.2061 -0.3111 -6.0025 26 6 3.5139 1.9985 -6.4287 27 6 4.2174 3.1680 -6.2124 28 6 4.0341 5.0981 -1.2492 29 6 3.4493 3.6843 -1.2493 30 1 -0.3635 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5139 -0.8899 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 5.7846 2.3255 0.8903 36 1 5.7846 2.3247 -0.8897 37 1 5.6975 4.8033 0.8902 38 1 7.1220 4.2140 -0.0002 39 1 7.1221 4.2140 -2.4982 40 1 5.6170 3.2639 -2.4983 41 1 6.1161 -0.9725 -4.8543 42 1 5.4045 0.3567 -2.3732 43 1 4.2912 -2.7683 -3.2757 44 1 2.8926 -0.7822 -3.1458 45 1 2.6659 1.9949 -7.0975 46 1 3.9193 4.0779 -6.7121 47 1 3.6981 5.6303 -0.3592 48 1 3.6982 5.6299 -2.1394 49 1 3.7853 3.1521 -2.1392 50 1 2.3608 3.7414 -1.2489 There are 78 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 78 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_9576490_16464696.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 13:55:50 Heat of formation + Delta-G solvation = -316.376823 kcal Electronic energy + Delta-G solvation = -47325.309817 eV Core-core repulsion = 41191.584342 eV Total energy + Delta-G solvation = -6133.725475 eV No. of doubly occupied orbitals = 78 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 439.113 amu Computer time = 1.82 seconds Orbital eigenvalues (eV) -50.87755 -50.57818 -49.14468 -42.37280 -41.95925 -39.86310 -39.70208 -38.64835 -37.90304 -37.77912 -37.55981 -33.65417 -33.02445 -32.57146 -32.17142 -31.33919 -29.38989 -27.49090 -25.49697 -25.07228 -24.26477 -23.85498 -23.71061 -22.28055 -21.87679 -20.56577 -20.03534 -19.68369 -19.55229 -19.32668 -18.87361 -18.40211 -18.13681 -17.88896 -17.74659 -17.65599 -17.41350 -17.23285 -16.95488 -16.77388 -16.49909 -16.27568 -16.10492 -16.00801 -15.81032 -15.54047 -15.43458 -15.06450 -14.99817 -14.62100 -14.56353 -14.27792 -14.24015 -14.19289 -13.97662 -13.86438 -13.78110 -13.65318 -13.59486 -13.41487 -13.35734 -13.21790 -13.13940 -12.98451 -12.89100 -12.79973 -12.70148 -12.58499 -12.35706 -12.11004 -12.07048 -11.69385 -11.60366 -11.48419 -11.22989 -11.16033 -10.25320 -10.22161 -4.77715 -1.50983 -0.65071 -0.59871 0.56676 0.97155 1.01537 1.42217 1.50009 1.69171 1.81753 2.09843 2.25891 2.47495 2.60131 2.71771 2.88532 2.95994 2.99918 3.01662 3.29788 3.30922 3.38154 3.50366 3.54400 3.56595 3.70104 3.84371 3.86798 3.93970 3.95251 4.05776 4.11334 4.15466 4.19272 4.20202 4.22483 4.32541 4.42687 4.47929 4.55421 4.56240 4.68394 4.70772 4.75405 4.79585 4.82127 4.87340 4.91547 5.02076 5.06234 5.12592 5.20875 5.34842 6.10331 6.54419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.054 3.946 3 O -0.356 6.356 4 C 0.463 3.537 5 O -0.533 6.533 6 C -0.083 4.083 7 H 0.144 0.856 8 C -0.107 4.107 9 C -0.122 4.122 10 C 0.132 3.868 11 F -0.206 7.206 12 C -0.683 4.683 13 S 2.589 3.411 14 O -0.940 6.940 15 O -0.948 6.948 16 O -0.657 6.657 17 C 0.003 3.997 18 C 0.122 3.878 19 F -0.109 7.109 20 C -0.178 4.178 21 C -0.088 4.088 22 O -0.534 6.534 23 Si 0.737 3.263 24 C 0.147 3.853 25 F -0.066 7.066 26 C -0.110 4.110 27 C -0.034 4.034 28 C -0.171 4.171 29 C -0.107 4.107 30 H 0.094 0.906 31 H 0.073 0.927 32 H 0.071 0.929 33 H 0.057 0.943 34 H 0.069 0.931 35 H 0.089 0.911 36 H 0.072 0.928 37 H 0.108 0.892 38 H 0.094 0.906 39 H 0.170 0.830 40 H 0.164 0.836 41 H 0.147 0.853 42 H 0.378 0.622 43 H -0.294 1.294 44 H -0.281 1.281 45 H 0.209 0.791 46 H 0.186 0.814 47 H 0.123 0.877 48 H 0.090 0.910 49 H 0.063 0.937 50 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.994 -3.148 -1.926 7.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.020 4.020 3 O -0.272 6.272 4 C 0.307 3.693 5 O -0.422 6.422 6 C -0.102 4.102 7 H 0.161 0.839 8 C -0.144 4.144 9 C -0.161 4.161 10 C 0.113 3.887 11 F -0.186 7.186 12 C -0.810 4.810 13 S 2.686 3.314 14 O -0.938 6.938 15 O -0.946 6.946 16 O -0.616 6.616 17 C -0.040 4.040 18 C 0.100 3.900 19 F -0.087 7.087 20 C -0.180 4.180 21 C -0.197 4.197 22 O -0.340 6.340 23 Si 0.642 3.358 24 C 0.127 3.873 25 F -0.044 7.044 26 C -0.128 4.128 27 C -0.054 4.054 28 C -0.208 4.208 29 C -0.144 4.144 30 H 0.113 0.887 31 H 0.092 0.908 32 H 0.090 0.910 33 H 0.075 0.925 34 H 0.087 0.913 35 H 0.108 0.892 36 H 0.091 0.909 37 H 0.126 0.874 38 H 0.113 0.887 39 H 0.188 0.812 40 H 0.181 0.819 41 H 0.164 0.836 42 H 0.226 0.774 43 H -0.223 1.223 44 H -0.207 1.207 45 H 0.226 0.774 46 H 0.203 0.797 47 H 0.142 0.858 48 H 0.108 0.892 49 H 0.082 0.918 50 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -6.884 -3.565 -2.131 8.040 hybrid contribution 1.467 0.210 1.625 2.199 sum -5.418 -3.355 -0.507 6.393 Atomic orbital electron populations 1.21834 0.90380 1.04314 1.04074 1.23241 0.97243 0.79505 1.01995 1.86523 1.24237 1.33089 1.83352 1.24183 0.80701 0.93089 0.71317 1.90684 1.60945 1.44116 1.46462 1.21348 0.96454 0.88851 1.03541 0.83877 1.21512 0.91621 0.96516 1.04774 1.22053 1.02998 0.95137 0.95882 1.20722 0.94843 0.78160 0.95014 1.92977 1.88059 1.40124 1.97485 1.31686 1.16476 1.15748 1.17137 1.05694 0.74679 0.75043 0.75950 1.93631 1.30336 1.86040 1.83810 1.93650 1.75930 1.40478 1.84549 1.85795 1.68320 1.40893 1.66585 1.18424 0.97517 0.81422 1.06660 1.17246 0.86869 0.92564 0.93355 1.91616 1.52348 1.96809 1.67958 1.20396 0.98050 0.96349 1.03236 1.25238 1.10925 0.97051 0.86447 1.86647 1.42829 1.79027 1.25484 0.94226 0.74613 0.77997 0.88977 1.17334 0.89988 0.83516 0.96498 1.90790 1.77395 1.46020 1.90199 1.21601 1.02391 0.88094 1.00687 1.21567 0.89635 1.01550 0.92680 1.22652 0.91054 0.99530 1.07595 1.21527 1.03626 0.93598 0.95662 0.88710 0.90815 0.91010 0.92495 0.91284 0.89201 0.90938 0.87381 0.88742 0.81174 0.81868 0.83557 0.77422 1.22309 1.20739 0.77428 0.79657 0.85836 0.89170 0.91786 0.87348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.64 10.29 71.98 0.74 1.38 16 2 C 0.05 0.03 6.19 71.98 0.45 0.47 16 3 O -0.36 -0.50 10.12 -51.42 -0.52 -1.02 16 4 C 0.46 0.72 7.26 71.24 0.52 1.24 16 5 O -0.53 -3.72 15.73 21.97 0.35 -3.37 16 6 C -0.08 0.36 2.63 -11.54 -0.03 0.33 16 7 H 0.14 -1.27 8.14 -2.39 -0.02 -1.29 16 8 C -0.11 0.42 4.22 30.59 0.13 0.55 16 9 C -0.12 0.57 5.19 30.59 0.16 0.73 16 10 C 0.13 -0.09 1.10 -10.79 -0.01 -0.10 16 11 F -0.21 -1.08 16.08 44.97 0.72 -0.35 16 12 C -0.68 0.08 3.24 71.98 0.23 0.32 16 13 S 2.59 13.29 4.51 -56.49 -0.25 13.03 16 14 O -0.94 -3.74 13.88 -118.57 -1.65 -5.39 16 15 O -0.95 -12.95 17.61 -118.57 -2.09 -15.04 16 16 O -0.66 -2.77 9.92 -62.60 -0.62 -3.39 16 17 C 0.00 0.00 4.80 22.52 0.11 0.11 16 18 C 0.12 0.04 6.14 22.45 0.14 0.18 16 19 F -0.11 -0.27 12.70 44.97 0.57 0.30 16 20 C -0.18 0.40 5.33 -19.79 -0.11 0.29 16 21 C -0.09 0.04 2.93 71.24 0.21 0.25 16 22 O -0.53 -2.18 10.84 -148.98 -1.61 -3.79 16 23 Si 0.74 -0.16 28.61 68.60 1.96 1.81 16 24 C 0.15 -0.98 6.73 22.37 0.15 -0.83 16 25 F -0.07 0.56 12.43 44.97 0.56 1.12 16 26 C -0.11 1.08 10.02 22.31 0.22 1.31 16 27 C -0.03 0.19 9.04 22.35 0.20 0.39 16 28 C -0.17 0.53 4.71 30.59 0.14 0.67 16 29 C -0.11 0.47 4.86 30.59 0.15 0.61 16 30 H 0.09 -0.64 8.14 -2.39 -0.02 -0.66 16 31 H 0.07 -0.35 8.14 -2.39 -0.02 -0.37 16 32 H 0.07 -0.33 8.14 -2.39 -0.02 -0.35 16 33 H 0.06 0.14 8.13 -2.39 -0.02 0.12 16 34 H 0.07 0.06 8.13 -2.39 -0.02 0.04 16 35 H 0.09 -0.31 8.10 -2.39 -0.02 -0.33 16 36 H 0.07 -0.19 6.39 -2.39 -0.02 -0.21 16 37 H 0.11 -0.83 8.14 -2.39 -0.02 -0.85 16 38 H 0.09 -0.47 8.14 -2.38 -0.02 -0.49 16 39 H 0.17 -0.45 8.14 -2.39 -0.02 -0.47 16 40 H 0.16 -0.50 2.79 -2.39 -0.01 -0.50 16 41 H 0.15 -0.45 7.96 -2.39 -0.02 -0.47 16 42 H 0.38 0.72 8.70 -74.06 -0.64 0.07 16 43 H -0.29 -2.24 7.11 99.48 0.71 -1.53 16 44 H -0.28 -1.00 7.11 99.48 0.71 -0.29 16 45 H 0.21 -3.66 8.06 -2.91 -0.02 -3.68 16 46 H 0.19 -1.71 8.06 -2.91 -0.02 -1.73 16 47 H 0.12 -0.89 8.14 -2.39 -0.02 -0.91 16 48 H 0.09 -0.07 5.46 -2.39 -0.01 -0.08 16 49 H 0.06 -0.25 6.43 -2.39 -0.02 -0.27 16 50 H 0.11 -0.64 8.11 -2.38 -0.02 -0.66 16 Total: 0.00 -24.33 412.77 1.24 -23.09 By element: Atomic # 1 Polarization: -15.32 SS G_CDS: 0.42 Total: -14.90 kcal Atomic # 6 Polarization: 4.50 SS G_CDS: 3.40 Total: 7.90 kcal Atomic # 8 Polarization: -25.87 SS G_CDS: -6.14 Total: -32.01 kcal Atomic # 9 Polarization: -0.78 SS G_CDS: 1.85 Total: 1.07 kcal Atomic # 14 Polarization: -0.16 SS G_CDS: 1.96 Total: 1.81 kcal Atomic # 16 Polarization: 13.29 SS G_CDS: -0.25 Total: 13.03 kcal Total: -24.33 1.24 -23.09 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_9576490_16464696.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -293.286 kcal (2) G-P(sol) polarization free energy of solvation -24.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -317.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.091 kcal (6) G-S(sol) free energy of system = (1) + (5) -316.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.83 seconds