Wall clock time and date at job start Mon Mar 8 2021 13:55:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 O 1.45203 * 109.47132 * 2 1 4 4 C 1.34232 * 117.00214 * 179.97438 * 3 2 1 5 5 O 1.20825 * 119.99576 * 0.02562 * 4 3 2 6 6 C 1.50697 * 120.00081 * 179.97438 * 4 3 2 7 7 H 1.09004 * 109.46749 * 299.99736 * 6 4 3 8 8 C 1.52994 * 109.47452 * 59.99857 * 6 4 3 9 9 C 1.52997 * 109.47534 * 179.97438 * 8 6 4 10 10 C 1.52997 * 109.46960 * 300.00067 * 9 8 6 11 11 F 1.39899 * 109.47406 * 299.99861 * 10 9 8 12 12 C 1.53006 * 109.47354 * 179.97438 * 10 9 8 13 13 S 1.81406 * 109.46553 * 59.99971 * 12 10 9 14 14 O 1.42103 * 110.54237 * 68.38158 * 13 12 10 15 15 O 1.42099 * 110.54329 * 291.62413 * 13 12 10 16 16 O 1.52204 * 104.44642 * 180.02562 * 13 12 10 17 17 C 1.35998 * 114.00004 * 74.99864 * 16 13 12 18 18 C 1.38884 * 120.04293 * 269.97808 * 17 16 13 19 19 F 1.35099 * 120.03406 * 0.02562 * 18 17 16 20 20 C 1.38333 * 119.93378 * 180.02562 * 18 17 16 21 21 C 1.50704 * 119.99638 * 180.02562 * 20 18 17 22 22 O 1.42903 * 109.46512 * 113.40033 * 21 20 18 23 23 Si 1.86295 * 109.47063 * 233.39694 * 21 20 18 24 24 C 1.38442 * 120.00672 * 359.74951 * 20 18 17 25 25 F 1.35089 * 119.96514 * 180.27124 * 24 20 18 26 26 C 1.38455 * 120.07205 * 0.50653 * 24 20 18 27 27 C 1.38190 * 120.06725 * 359.49032 * 26 24 20 28 28 C 1.53007 * 109.47157 * 59.99795 * 10 9 8 29 29 C 1.52994 * 109.47095 * 300.00235 * 28 10 9 30 30 H 1.09002 * 109.47397 * 180.02562 * 1 2 3 31 31 H 1.09006 * 109.47562 * 300.00051 * 1 2 3 32 32 H 1.09005 * 109.47493 * 60.00316 * 1 2 3 33 33 H 1.08993 * 109.47423 * 239.99746 * 2 1 3 34 34 H 1.09001 * 109.47126 * 119.99328 * 2 1 3 35 35 H 1.08999 * 109.47398 * 300.00387 * 8 6 4 36 36 H 1.09004 * 109.47058 * 59.99659 * 8 6 4 37 37 H 1.08998 * 109.47156 * 180.02562 * 9 8 6 38 38 H 1.09004 * 109.46700 * 59.99858 * 9 8 6 39 39 H 1.08997 * 109.46936 * 300.00805 * 12 10 9 40 40 H 1.08992 * 109.47620 * 179.97438 * 12 10 9 41 41 H 1.08999 * 109.47468 * 353.40425 * 21 20 18 42 42 H 0.96701 * 114.00366 * 60.00336 * 22 21 20 43 43 H 1.48500 * 110.00122 * 63.71100 * 23 21 20 44 44 H 1.48506 * 109.99808 * 185.02402 * 23 21 20 45 45 H 1.07999 * 119.96798 * 179.76470 * 26 24 20 46 46 H 1.08009 * 119.99886 * 180.27883 * 27 26 24 47 47 H 1.09007 * 109.46667 * 60.00045 * 28 10 9 48 48 H 1.09005 * 109.47208 * 179.97438 * 28 10 9 49 49 H 1.09005 * 109.46903 * 180.02562 * 29 28 10 50 50 H 1.09007 * 109.46689 * 299.99388 * 29 28 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3447 1.5449 0.0005 5 8 4.0807 0.5867 0.0005 6 6 3.9206 2.9375 0.0000 7 1 3.5851 3.4690 -0.8905 8 6 3.4485 3.6852 1.2485 9 6 4.0338 5.0988 1.2482 10 6 5.5616 5.0182 1.2494 11 9 5.9918 4.3356 2.3923 12 6 6.1470 6.4318 1.2485 13 16 5.5871 7.3189 2.7286 14 8 6.1702 6.7577 3.8966 15 8 4.1915 7.5762 2.6575 16 8 6.2283 8.6943 2.6121 17 6 5.6386 9.5034 1.6916 18 6 6.0825 9.4985 0.3756 19 9 7.1004 8.6896 0.0084 20 6 5.4815 10.3227 -0.5587 21 6 5.9617 10.3181 -1.9872 22 8 4.9372 9.7904 -2.8322 23 14 6.3643 12.0595 -2.5126 24 6 4.4351 11.1476 -0.1829 25 9 3.8451 11.9482 -1.0972 26 6 3.9958 11.1566 1.1301 27 6 4.5940 10.3344 2.0660 28 6 6.0338 4.2704 0.0008 29 6 5.4485 2.8569 0.0010 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 1.8933 -0.5138 -0.8899 34 1 1.8933 -0.5137 0.8901 35 1 2.3600 3.7422 1.2480 36 1 3.7840 3.1536 2.1390 37 1 3.6977 5.6313 2.1380 38 1 3.6986 5.6306 0.3577 39 1 5.8118 6.9633 0.3579 40 1 7.2354 6.3744 1.2498 41 1 6.8546 9.6983 -2.0684 42 1 4.1115 10.2932 -2.8104 43 1 7.4894 12.5879 -1.7000 44 1 6.7227 12.0852 -3.9535 45 1 3.1819 11.8036 1.4222 46 1 4.2475 10.3391 3.0889 47 1 5.6987 4.8023 -0.8897 48 1 7.1224 4.2134 0.0013 49 1 5.7853 2.3240 -0.8883 50 1 5.7837 2.3250 0.8915 There are 78 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 78 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_9576490_16464698.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 13:55:57 Heat of formation + Delta-G solvation = -319.596032 kcal Electronic energy + Delta-G solvation = -44348.073703 eV Core-core repulsion = 38214.208632 eV Total energy + Delta-G solvation = -6133.865071 eV No. of doubly occupied orbitals = 78 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 439.113 amu Computer time = 1.67 seconds Orbital eigenvalues (eV) -50.67328 -50.42571 -49.16253 -42.30732 -41.80564 -39.71444 -39.15883 -38.59186 -37.71493 -37.69584 -37.50003 -34.27046 -32.96864 -32.63922 -32.12105 -31.22448 -29.16937 -27.41234 -25.21768 -24.90794 -24.20812 -23.84672 -23.56125 -22.13010 -21.69602 -20.91425 -19.93777 -19.58627 -19.54169 -19.15109 -18.82542 -18.22992 -18.12216 -17.84537 -17.73074 -17.38967 -17.17076 -17.08605 -16.92898 -16.74172 -16.52866 -16.27778 -16.14236 -15.74115 -15.54080 -15.40116 -15.22421 -15.01946 -14.93060 -14.55743 -14.47041 -14.31101 -14.20418 -14.10055 -13.84284 -13.74226 -13.65278 -13.55423 -13.52807 -13.45610 -13.23576 -13.23262 -13.19068 -13.04038 -12.93124 -12.64870 -12.58117 -12.50643 -12.23796 -12.18836 -12.00700 -11.77710 -11.57463 -11.38689 -11.17246 -10.93412 -10.20789 -10.11361 -5.01786 -1.45027 -0.56385 -0.53088 0.63622 1.04933 1.07194 1.53132 1.57657 1.77641 1.91378 2.14667 2.31007 2.54029 2.69403 2.73917 2.95726 3.04295 3.18886 3.31286 3.33369 3.44266 3.48055 3.53072 3.55137 3.64369 3.75351 3.92572 3.95129 3.97082 4.01422 4.02665 4.10535 4.23976 4.27821 4.29883 4.35402 4.40472 4.47579 4.49656 4.59401 4.64914 4.74189 4.78114 4.79412 4.86246 4.88348 4.89857 4.96230 5.05748 5.11779 5.19858 5.30158 5.41157 6.52722 6.61541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.053 3.947 3 O -0.357 6.357 4 C 0.465 3.535 5 O -0.541 6.541 6 C -0.077 4.077 7 H 0.147 0.853 8 C -0.110 4.110 9 C -0.171 4.171 10 C 0.125 3.875 11 F -0.212 7.212 12 C -0.671 4.671 13 S 2.587 3.413 14 O -0.953 6.953 15 O -0.943 6.943 16 O -0.658 6.658 17 C 0.001 3.999 18 C 0.121 3.879 19 F -0.117 7.117 20 C -0.176 4.176 21 C -0.071 4.071 22 O -0.538 6.538 23 Si 0.754 3.246 24 C 0.160 3.840 25 F -0.088 7.088 26 C -0.114 4.114 27 C -0.036 4.036 28 C -0.123 4.123 29 C -0.109 4.109 30 H 0.095 0.905 31 H 0.069 0.931 32 H 0.071 0.929 33 H 0.068 0.932 34 H 0.064 0.936 35 H 0.105 0.895 36 H 0.060 0.940 37 H 0.088 0.912 38 H 0.133 0.867 39 H 0.179 0.821 40 H 0.169 0.831 41 H 0.123 0.877 42 H 0.395 0.605 43 H -0.284 1.284 44 H -0.278 1.278 45 H 0.204 0.796 46 H 0.181 0.819 47 H 0.121 0.879 48 H 0.093 0.907 49 H 0.086 0.914 50 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.895 7.606 -5.147 11.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.020 4.020 3 O -0.274 6.274 4 C 0.309 3.691 5 O -0.430 6.430 6 C -0.096 4.096 7 H 0.164 0.836 8 C -0.147 4.147 9 C -0.209 4.209 10 C 0.106 3.894 11 F -0.192 7.192 12 C -0.799 4.799 13 S 2.685 3.315 14 O -0.951 6.951 15 O -0.941 6.941 16 O -0.617 6.617 17 C -0.042 4.042 18 C 0.100 3.900 19 F -0.095 7.095 20 C -0.178 4.178 21 C -0.181 4.181 22 O -0.346 6.346 23 Si 0.657 3.343 24 C 0.139 3.861 25 F -0.066 7.066 26 C -0.133 4.133 27 C -0.056 4.056 28 C -0.162 4.162 29 C -0.147 4.147 30 H 0.113 0.887 31 H 0.088 0.912 32 H 0.090 0.910 33 H 0.087 0.913 34 H 0.082 0.918 35 H 0.124 0.876 36 H 0.079 0.921 37 H 0.107 0.893 38 H 0.151 0.849 39 H 0.197 0.803 40 H 0.187 0.813 41 H 0.141 0.859 42 H 0.246 0.754 43 H -0.210 1.210 44 H -0.204 1.204 45 H 0.221 0.779 46 H 0.198 0.802 47 H 0.139 0.861 48 H 0.111 0.889 49 H 0.104 0.896 50 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -5.767 7.548 -4.849 10.665 hybrid contribution 1.393 -1.683 0.008 2.185 sum -4.374 5.865 -4.841 8.773 Atomic orbital electron populations 1.21822 0.90501 1.04257 1.03864 1.23253 0.97040 0.79392 1.02355 1.86509 1.24036 1.33397 1.83430 1.24207 0.80660 0.93140 0.71059 1.90675 1.61205 1.44451 1.46706 1.21273 0.96181 0.88751 1.03392 0.83591 1.21477 1.03073 0.94109 0.96042 1.22748 0.91115 0.99316 1.07679 1.20839 0.95706 0.87643 0.85261 1.92946 1.91498 1.81698 1.53092 1.31537 1.15741 1.08825 1.23796 1.05725 0.74515 0.74176 0.77080 1.93648 1.78825 1.76797 1.45852 1.93630 1.31868 1.81340 1.87285 1.85809 1.70568 1.43356 1.61930 1.18380 0.99994 1.01050 0.84811 1.17238 0.88637 0.93309 0.90860 1.91560 1.56250 1.69840 1.91875 1.20308 0.99769 0.99614 0.98117 1.25012 0.94961 1.12738 0.85371 1.86559 1.26262 1.57248 1.64578 0.93966 0.86075 0.76016 0.78228 1.17253 0.91519 0.89626 0.87710 1.91431 1.80661 1.69938 1.64578 1.21578 1.02205 1.00284 0.89206 1.21533 0.90254 0.90484 1.03281 1.22130 1.02868 0.94843 0.96314 1.21450 0.92120 0.97157 1.03946 0.88663 0.91235 0.90967 0.91341 0.91790 0.87630 0.92139 0.89323 0.84878 0.80308 0.81311 0.85935 0.75417 1.21024 1.20408 0.77888 0.80203 0.86082 0.88859 0.89552 0.92364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.49 10.29 71.98 0.74 1.23 16 2 C 0.05 0.09 6.19 71.98 0.45 0.54 16 3 O -0.36 -1.35 10.12 -51.44 -0.52 -1.87 16 4 C 0.46 2.50 7.26 71.23 0.52 3.02 16 5 O -0.54 -6.65 15.73 21.97 0.35 -6.31 16 6 C -0.08 0.09 2.63 -11.54 -0.03 0.06 16 7 H 0.15 -1.10 8.14 -2.39 -0.02 -1.11 16 8 C -0.11 0.11 5.01 30.59 0.15 0.27 16 9 C -0.17 0.40 4.52 30.59 0.14 0.54 16 10 C 0.12 -0.01 0.88 -10.79 -0.01 -0.02 16 11 F -0.21 -1.63 15.05 44.97 0.68 -0.95 16 12 C -0.67 1.55 3.92 71.98 0.28 1.83 16 13 S 2.59 11.02 4.51 -56.49 -0.25 10.76 16 14 O -0.95 -13.08 17.61 -118.57 -2.09 -15.16 16 15 O -0.94 -3.36 13.88 -118.57 -1.65 -5.01 16 16 O -0.66 -1.87 9.92 -62.62 -0.62 -2.49 16 17 C 0.00 0.00 4.80 22.52 0.11 0.11 16 18 C 0.12 -0.34 6.28 22.45 0.14 -0.20 16 19 F -0.12 0.25 13.62 44.97 0.61 0.86 16 20 C -0.18 1.01 4.65 -19.79 -0.09 0.91 16 21 C -0.07 0.35 2.78 71.24 0.20 0.55 16 22 O -0.54 2.78 12.88 -148.98 -1.92 0.86 16 23 Si 0.75 -3.42 30.30 68.60 2.08 -1.34 16 24 C 0.16 -1.56 6.52 22.37 0.15 -1.42 16 25 F -0.09 1.11 13.52 44.97 0.61 1.72 16 26 C -0.11 1.33 10.02 22.31 0.22 1.56 16 27 C -0.04 0.23 9.04 22.35 0.20 0.44 16 28 C -0.12 0.48 5.00 30.59 0.15 0.63 16 29 C -0.11 -0.02 4.37 30.59 0.13 0.11 16 30 H 0.09 -0.57 8.14 -2.39 -0.02 -0.59 16 31 H 0.07 -0.22 8.14 -2.38 -0.02 -0.24 16 32 H 0.07 -0.28 8.14 -2.38 -0.02 -0.29 16 33 H 0.07 0.14 8.13 -2.39 -0.02 0.12 16 34 H 0.06 0.19 8.13 -2.39 -0.02 0.17 16 35 H 0.11 -0.38 8.11 -2.39 -0.02 -0.40 16 36 H 0.06 0.18 7.80 -2.39 -0.02 0.16 16 37 H 0.09 0.00 5.46 -2.39 -0.01 -0.01 16 38 H 0.13 -1.19 8.14 -2.39 -0.02 -1.21 16 39 H 0.18 -1.46 6.09 -2.39 -0.01 -1.47 16 40 H 0.17 -0.81 8.14 -2.39 -0.02 -0.83 16 41 H 0.12 -0.49 6.97 -2.39 -0.02 -0.51 16 42 H 0.40 -4.91 7.57 -74.06 -0.56 -5.48 16 43 H -0.28 -0.37 7.11 99.48 0.71 0.34 16 44 H -0.28 -0.54 7.11 99.48 0.71 0.17 16 45 H 0.20 -3.79 8.06 -2.91 -0.02 -3.82 16 46 H 0.18 -1.73 8.06 -2.91 -0.02 -1.75 16 47 H 0.12 -1.18 8.14 -2.38 -0.02 -1.20 16 48 H 0.09 -0.41 8.14 -2.38 -0.02 -0.43 16 49 H 0.09 0.00 8.10 -2.38 -0.02 -0.02 16 50 H 0.06 0.32 7.76 -2.38 -0.02 0.30 16 Total: 0.00 -28.06 420.90 1.21 -26.85 By element: Atomic # 1 Polarization: -18.58 SS G_CDS: 0.49 Total: -18.08 kcal Atomic # 6 Polarization: 6.71 SS G_CDS: 3.45 Total: 10.16 kcal Atomic # 8 Polarization: -23.53 SS G_CDS: -6.45 Total: -29.98 kcal Atomic # 9 Polarization: -0.27 SS G_CDS: 1.90 Total: 1.63 kcal Atomic # 14 Polarization: -3.42 SS G_CDS: 2.08 Total: -1.34 kcal Atomic # 16 Polarization: 11.02 SS G_CDS: -0.25 Total: 10.76 kcal Total: -28.06 1.21 -26.85 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_9576490_16464698.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -292.748 kcal (2) G-P(sol) polarization free energy of solvation -28.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -320.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -26.848 kcal (6) G-S(sol) free energy of system = (1) + (5) -319.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.67 seconds