Wall clock time and date at job start Mon Mar 8 2021 13:59:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.45209 * 109.46921 * 2 1 4 4 C 1.34230 * 116.99705 * 180.02562 * 3 2 1 5 5 O 1.20826 * 120.00163 * 359.97438 * 4 3 2 6 6 C 1.50701 * 119.99907 * 180.02562 * 4 3 2 7 7 H 1.09002 * 112.84415 * 311.19288 * 6 4 3 8 8 C 1.53777 * 113.61726 * 82.49651 * 6 4 3 9 9 C 1.53779 * 87.08094 * 139.98341 * 8 6 4 10 10 F 1.39899 * 113.68802 * 89.12788 * 9 8 6 11 11 C 1.53003 * 113.61720 * 220.02020 * 9 8 6 12 12 S 1.81397 * 109.47091 * 282.49946 * 11 9 8 13 13 O 1.42098 * 110.54464 * 68.37357 * 12 11 9 14 14 O 1.42098 * 110.54234 * 291.62254 * 12 11 9 15 15 O 1.52203 * 104.44967 * 179.97438 * 12 11 9 16 16 C 1.35994 * 113.99958 * 74.99969 * 15 12 11 17 17 C 1.38881 * 120.03933 * 90.00011 * 16 15 12 18 18 F 1.35097 * 120.03782 * 359.70172 * 17 16 15 19 19 C 1.38338 * 119.93277 * 179.71802 * 17 16 15 20 20 C 1.50697 * 119.99988 * 180.02562 * 19 17 16 21 21 O 1.42894 * 109.47459 * 237.00160 * 20 19 17 22 22 Si 1.86299 * 109.46949 * 116.99915 * 20 19 17 23 23 C 1.38448 * 120.00503 * 0.02562 * 19 17 16 24 24 F 1.35096 * 119.96325 * 179.97438 * 23 19 17 25 25 C 1.38460 * 120.07170 * 359.97438 * 23 19 17 26 26 C 1.38183 * 120.06946 * 359.97438 * 25 23 19 27 27 C 1.53775 * 113.61720 * 179.97438 * 6 4 3 28 28 H 1.08998 * 109.46935 * 60.00144 * 1 2 3 29 29 H 1.08996 * 109.46739 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.46771 * 299.99813 * 1 2 3 31 31 H 1.09000 * 109.47670 * 240.00292 * 2 1 3 32 32 H 1.08997 * 109.47425 * 120.00058 * 2 1 3 33 33 H 1.09001 * 113.61051 * 25.43462 * 8 6 4 34 34 H 1.08998 * 113.61755 * 254.53139 * 8 6 4 35 35 H 1.08998 * 109.47194 * 162.49316 * 11 9 8 36 36 H 1.09001 * 109.46840 * 42.49358 * 11 9 8 37 37 H 1.09004 * 109.47105 * 357.00319 * 20 19 17 38 38 H 0.96702 * 114.00277 * 180.02562 * 21 20 19 39 39 H 1.48500 * 110.00013 * 305.40847 * 22 20 19 40 40 H 1.48509 * 109.99893 * 66.72599 * 22 20 19 41 41 H 1.07999 * 119.95922 * 180.02562 * 25 23 19 42 42 H 1.08000 * 119.99947 * 179.97438 * 26 25 23 43 43 H 1.08999 * 113.61427 * 105.46714 * 27 6 4 44 44 H 1.09001 * 113.61525 * 334.56654 * 27 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3691 0.0000 4 6 3.3447 1.5449 -0.0005 5 8 4.0808 0.5867 -0.0005 6 6 3.9207 2.9375 0.0000 7 1 3.4708 3.5819 -0.7553 8 6 3.9869 3.5763 1.3973 9 6 5.3568 4.1421 0.9876 10 9 5.2851 5.3933 0.3660 11 6 6.3996 4.0933 2.1062 12 16 6.0873 5.4380 3.2829 13 8 4.8789 5.2077 3.9943 14 8 6.3555 6.6979 2.6830 15 8 7.1766 5.2830 4.3346 16 6 8.4056 5.6948 3.9228 17 6 8.7991 7.0122 4.1187 18 9 7.9592 7.8876 4.7130 19 6 10.0520 7.4273 3.7042 20 6 10.4807 8.8563 3.9165 21 8 10.8372 9.4382 2.6611 22 14 11.9501 8.9003 5.0610 23 6 10.9120 6.5299 3.0944 24 9 12.1351 6.9363 2.6896 25 6 10.5199 5.2165 2.8991 26 6 9.2695 4.7983 3.3128 27 6 5.4582 2.9683 -0.0001 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 4.0393 2.8492 2.2077 34 1 3.2299 4.3428 1.5633 35 1 7.3959 4.2079 1.6794 36 1 6.3335 3.1358 2.6229 37 1 9.6592 9.4204 4.3582 38 1 11.1244 10.3596 2.7220 39 1 11.6334 8.1826 6.3219 40 1 13.1256 8.2757 4.4026 41 1 11.1924 4.5179 2.4236 42 1 8.9647 3.7737 3.1595 43 1 5.8893 3.2437 -0.9625 44 1 5.9128 2.0750 0.4284 There are 72 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 72 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_9576490_16464788.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 13:59:07 Heat of formation + Delta-G solvation = -281.446075 kcal Electronic energy + Delta-G solvation = -38605.588264 eV Core-core repulsion = 32784.452737 eV Total energy + Delta-G solvation = -5821.135526 eV No. of doubly occupied orbitals = 72 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 411.082 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -50.61521 -50.45680 -49.23001 -42.37406 -41.87843 -39.71325 -39.38181 -38.63231 -37.72077 -37.57565 -37.49418 -33.27690 -32.82266 -32.01193 -31.30823 -27.55682 -27.31987 -26.91235 -25.08061 -24.07424 -23.65878 -22.38822 -21.82429 -20.88999 -19.96145 -19.68997 -19.57296 -19.19287 -18.95660 -18.60615 -18.26445 -17.77980 -17.67235 -17.35541 -17.28940 -17.19089 -16.75387 -16.68053 -16.36553 -16.24621 -16.06263 -15.77891 -15.58376 -15.43996 -15.33138 -14.73934 -14.67320 -14.46707 -14.39256 -14.32462 -14.19764 -13.74347 -13.71513 -13.69274 -13.59946 -13.53366 -13.48546 -13.13244 -13.11456 -12.98609 -12.95231 -12.60193 -12.54220 -12.46951 -12.01948 -11.92705 -11.59216 -11.53556 -11.45535 -11.01258 -10.22761 -10.12170 -5.13818 -1.51643 -0.68927 -0.59598 0.60690 0.96567 1.06868 1.53796 1.54299 1.68122 1.84235 2.18737 2.26759 2.51609 2.60634 2.66811 2.71454 2.84813 2.87768 3.13486 3.16601 3.24475 3.35746 3.41145 3.62483 3.73616 3.82064 3.95005 3.95848 4.01357 4.06243 4.25358 4.29656 4.30268 4.32998 4.34468 4.39570 4.41235 4.46253 4.59769 4.61763 4.73603 4.79861 4.87556 5.00349 5.10928 5.18680 5.38561 6.57371 6.70815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.054 3.946 3 O -0.362 6.362 4 C 0.477 3.523 5 O -0.527 6.527 6 C -0.110 4.110 7 H 0.148 0.852 8 C -0.157 4.157 9 C 0.092 3.908 10 F -0.186 7.186 11 C -0.650 4.650 12 S 2.573 3.427 13 O -0.946 6.946 14 O -0.967 6.967 15 O -0.652 6.652 16 C 0.000 4.000 17 C 0.141 3.859 18 F -0.121 7.121 19 C -0.161 4.161 20 C -0.091 4.091 21 O -0.554 6.554 22 Si 0.790 3.210 23 C 0.145 3.855 24 F -0.112 7.112 25 C -0.125 4.125 26 C -0.056 4.056 27 C -0.109 4.109 28 H 0.067 0.933 29 H 0.097 0.903 30 H 0.067 0.933 31 H 0.071 0.929 32 H 0.072 0.928 33 H 0.130 0.870 34 H 0.105 0.895 35 H 0.187 0.813 36 H 0.206 0.794 37 H 0.090 0.910 38 H 0.409 0.591 39 H -0.292 1.292 40 H -0.267 1.267 41 H 0.208 0.792 42 H 0.220 0.780 43 H 0.113 0.887 44 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.722 -3.575 -1.490 5.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.020 4.020 3 O -0.279 6.279 4 C 0.321 3.679 5 O -0.417 6.417 6 C -0.129 4.129 7 H 0.166 0.834 8 C -0.194 4.194 9 C 0.072 3.928 10 F -0.167 7.167 11 C -0.779 4.779 12 S 2.672 3.328 13 O -0.944 6.944 14 O -0.965 6.965 15 O -0.611 6.611 16 C -0.043 4.043 17 C 0.120 3.880 18 F -0.099 7.099 19 C -0.163 4.163 20 C -0.198 4.198 21 O -0.365 6.365 22 Si 0.691 3.309 23 C 0.124 3.876 24 F -0.091 7.091 25 C -0.143 4.143 26 C -0.075 4.075 27 C -0.147 4.147 28 H 0.086 0.914 29 H 0.116 0.884 30 H 0.086 0.914 31 H 0.089 0.911 32 H 0.090 0.910 33 H 0.148 0.852 34 H 0.124 0.876 35 H 0.205 0.795 36 H 0.224 0.776 37 H 0.108 0.892 38 H 0.261 0.739 39 H -0.219 1.219 40 H -0.193 1.193 41 H 0.225 0.775 42 H 0.237 0.763 43 H 0.132 0.868 44 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 3.953 -4.329 -0.742 5.909 hybrid contribution -0.800 -0.100 -0.367 0.886 sum 3.153 -4.428 -1.110 5.548 Atomic orbital electron populations 1.21842 0.91000 1.04290 1.03654 1.23292 0.96772 0.79084 1.02810 1.86536 1.24260 1.33794 1.83274 1.23603 0.80666 0.92319 0.71331 1.90668 1.60924 1.43669 1.46407 1.22589 0.98091 0.90928 1.01289 0.83413 1.23964 0.96132 1.02218 0.97124 1.21381 0.95798 0.81977 0.93649 1.92996 1.97094 1.42675 1.83900 1.31264 1.11138 1.22790 1.12757 1.06040 0.74273 0.77170 0.75334 1.93632 1.43297 1.86968 1.70494 1.93667 1.83211 1.40956 1.78663 1.85793 1.28277 1.85254 1.61744 1.18346 0.84972 0.92404 1.08574 1.17427 0.87590 0.86564 0.96466 1.91535 1.69884 1.68193 1.80324 1.19589 0.93098 0.98602 1.05040 1.24818 1.10315 0.89914 0.94797 1.86432 1.89039 1.33571 1.27413 0.94211 0.74255 0.89112 0.73362 1.17678 0.80917 0.93442 0.95541 1.91558 1.39271 1.90949 1.87273 1.21656 0.97555 0.93767 1.01360 1.21790 0.91322 1.01426 0.93004 1.23602 0.92975 0.97145 1.00996 0.91379 0.88445 0.91397 0.91061 0.90953 0.85176 0.87641 0.79515 0.77629 0.89159 0.73887 1.21862 1.19294 0.77514 0.76339 0.86818 0.84717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.60 10.29 71.98 0.74 1.34 16 2 C 0.05 -0.02 6.19 71.98 0.45 0.42 16 3 O -0.36 -0.86 10.22 -51.42 -0.53 -1.39 16 4 C 0.48 0.83 7.48 71.24 0.53 1.36 16 5 O -0.53 -3.15 15.65 21.96 0.34 -2.80 16 6 C -0.11 0.35 4.24 -11.02 -0.05 0.31 16 7 H 0.15 -0.80 8.14 -2.39 -0.02 -0.82 16 8 C -0.16 0.45 6.90 31.12 0.21 0.66 16 9 C 0.09 -0.29 1.57 -10.28 -0.02 -0.31 16 10 F -0.19 -0.58 16.51 44.97 0.74 0.16 16 11 C -0.65 4.83 5.12 71.98 0.37 5.20 16 12 S 2.57 12.63 4.92 -56.49 -0.28 12.35 16 13 O -0.95 -10.36 17.96 -118.57 -2.13 -12.49 16 14 O -0.97 -11.73 15.49 -118.57 -1.84 -13.57 16 15 O -0.65 -2.54 9.92 -62.58 -0.62 -3.16 16 16 C 0.00 0.00 4.80 22.52 0.11 0.11 16 17 C 0.14 1.11 6.43 22.45 0.14 1.26 16 18 F -0.12 -1.45 15.64 44.97 0.70 -0.74 16 19 C -0.16 -0.89 4.51 -19.79 -0.09 -0.98 16 20 C -0.09 -0.22 2.70 71.23 0.19 -0.02 16 21 O -0.55 -0.91 12.28 -148.98 -1.83 -2.74 16 22 Si 0.79 -0.85 31.40 68.60 2.15 1.30 16 23 C 0.14 0.24 6.61 22.37 0.15 0.39 16 24 F -0.11 -0.43 14.46 44.97 0.65 0.22 16 25 C -0.13 0.84 10.02 22.31 0.22 1.06 16 26 C -0.06 0.42 8.47 22.35 0.19 0.61 16 27 C -0.11 0.69 6.86 31.10 0.21 0.90 16 28 H 0.07 -0.25 8.14 -2.39 -0.02 -0.27 16 29 H 0.10 -0.68 8.14 -2.39 -0.02 -0.70 16 30 H 0.07 -0.24 8.14 -2.39 -0.02 -0.26 16 31 H 0.07 -0.03 8.13 -2.39 -0.02 -0.05 16 32 H 0.07 -0.05 8.13 -2.39 -0.02 -0.07 16 33 H 0.13 -0.74 7.99 -2.39 -0.02 -0.76 16 34 H 0.11 -0.20 8.14 -2.39 -0.02 -0.22 16 35 H 0.19 -2.65 6.62 -2.39 -0.02 -2.67 16 36 H 0.21 -3.28 8.05 -2.39 -0.02 -3.30 16 37 H 0.09 0.11 6.95 -2.38 -0.02 0.09 16 38 H 0.41 -3.68 8.74 -74.06 -0.65 -4.33 16 39 H -0.29 -1.43 7.11 99.48 0.71 -0.72 16 40 H -0.27 -1.02 6.52 99.48 0.65 -0.37 16 41 H 0.21 -3.10 8.06 -2.91 -0.02 -3.13 16 42 H 0.22 -4.13 7.51 -2.91 -0.02 -4.15 16 43 H 0.11 -0.92 8.14 -2.39 -0.02 -0.94 16 44 H 0.13 -1.15 7.39 -2.39 -0.02 -1.16 16 Total: 0.00 -35.56 396.70 1.16 -34.40 By element: Atomic # 1 Polarization: -24.25 SS G_CDS: 0.42 Total: -23.83 kcal Atomic # 6 Polarization: 8.94 SS G_CDS: 3.37 Total: 12.30 kcal Atomic # 8 Polarization: -29.56 SS G_CDS: -6.60 Total: -36.16 kcal Atomic # 9 Polarization: -2.47 SS G_CDS: 2.10 Total: -0.37 kcal Atomic # 14 Polarization: -0.85 SS G_CDS: 2.15 Total: 1.30 kcal Atomic # 16 Polarization: 12.63 SS G_CDS: -0.28 Total: 12.35 kcal Total: -35.56 1.16 -34.40 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_9576490_16464788.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -247.043 kcal (2) G-P(sol) polarization free energy of solvation -35.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -282.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.403 kcal (6) G-S(sol) free energy of system = (1) + (5) -281.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds