Wall clock time and date at job start Mon Mar 8 2021 11:31:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42907 * 113.99997 * 2 1 4 4 C 1.53000 * 112.84769 * 294.05531 * 3 2 1 5 5 F 1.39899 * 109.46882 * 194.60480 * 4 3 2 6 6 F 1.39895 * 109.47248 * 314.60625 * 4 3 2 7 7 F 1.39899 * 109.47236 * 74.60476 * 4 3 2 8 8 C 1.53777 * 113.68950 * 162.78431 * 3 2 1 9 9 C 1.53774 * 87.08284 * 270.87376 * 8 3 2 10 10 H 1.09006 * 113.69012 * 220.00640 * 9 8 3 11 11 C 1.53005 * 113.61278 * 89.11864 * 9 8 3 12 12 S 1.81399 * 109.47016 * 87.50252 * 11 9 8 13 13 O 1.42097 * 110.54205 * 68.37651 * 12 11 9 14 14 O 1.42097 * 110.54461 * 291.61933 * 12 11 9 15 15 O 1.52198 * 104.44813 * 179.97438 * 12 11 9 16 16 C 1.36007 * 114.00235 * 74.99803 * 15 12 11 17 17 C 1.38885 * 120.03925 * 269.73051 * 16 15 12 18 18 F 1.35103 * 120.03169 * 359.96461 * 17 16 15 19 19 C 1.38335 * 119.93142 * 179.71740 * 17 16 15 20 20 C 1.50693 * 120.00055 * 180.27474 * 19 17 16 21 21 O 1.42901 * 109.47501 * 125.37271 * 20 19 17 22 22 Si 1.86305 * 109.47252 * 245.37610 * 20 19 17 23 23 C 1.38447 * 120.00333 * 0.55171 * 19 17 16 24 24 F 1.35094 * 119.96251 * 179.69866 * 23 19 17 25 25 C 1.38457 * 120.07370 * 359.72258 * 23 19 17 26 26 C 1.38191 * 120.07095 * 359.97438 * 25 23 19 27 27 C 1.53776 * 87.08260 * 334.57142 * 9 8 3 28 28 H 1.09005 * 109.47521 * 64.56790 * 1 2 3 29 29 H 1.09001 * 109.47044 * 184.56680 * 1 2 3 30 30 H 1.09005 * 109.47278 * 304.56673 * 1 2 3 31 31 H 1.09007 * 113.61353 * 156.32311 * 8 3 2 32 32 H 1.09007 * 113.61543 * 25.42407 * 8 3 2 33 33 H 1.09001 * 109.46951 * 327.50036 * 11 9 8 34 34 H 1.09003 * 109.46861 * 207.50360 * 11 9 8 35 35 H 1.09010 * 109.47099 * 5.37126 * 20 19 17 36 36 H 0.96699 * 113.99931 * 179.97438 * 21 20 19 37 37 H 1.48504 * 109.99501 * 302.69216 * 22 20 19 38 38 H 1.48494 * 110.00104 * 64.01036 * 22 20 19 39 39 H 1.07995 * 119.96085 * 179.97438 * 25 23 19 40 40 H 1.07998 * 120.00020 * 179.97438 * 26 25 23 41 41 H 1.08996 * 113.62064 * 139.98171 * 27 9 8 42 42 H 1.09002 * 113.61447 * 270.79875 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 1.7268 2.0820 -1.2875 5 9 2.5808 3.1875 -1.3629 6 9 1.9427 1.2498 -2.3911 7 9 0.3977 2.5187 -1.2858 8 6 3.4903 1.3229 0.4168 9 6 2.9993 1.4836 1.8651 10 1 3.5953 2.1802 2.4549 11 6 2.7583 0.1534 2.5817 12 16 4.3021 -0.4069 3.3519 13 8 4.6614 0.4485 4.4283 14 8 5.2505 -0.7731 2.3591 15 8 3.9355 -1.7220 4.0246 16 6 3.7851 -2.7620 3.1612 17 6 2.5402 -3.0314 2.6075 18 9 1.4772 -2.2611 2.9265 19 6 2.3910 -4.0862 1.7250 20 6 1.0424 -4.3762 1.1184 21 8 1.1554 -4.3987 -0.3059 22 14 0.4341 -6.0314 1.7194 23 6 3.4795 -4.8791 1.4033 24 9 3.3315 -5.9127 0.5461 25 6 4.7194 -4.6141 1.9597 26 6 4.8733 -3.5574 2.8368 27 6 1.7218 2.1081 1.2796 28 1 -0.3634 0.4413 -0.9281 29 1 -0.3633 -1.0244 0.0818 30 1 -0.3634 0.5831 0.8463 31 1 4.0390 2.1875 0.0432 32 1 4.0068 0.3807 0.2328 33 1 2.4205 -0.5915 1.8612 34 1 1.9967 0.2873 3.3499 35 1 0.3363 -3.6003 1.4147 36 1 0.3233 -4.5807 -0.7637 37 1 1.4195 -7.0888 1.3787 38 1 0.2198 -5.9911 3.1882 39 1 5.5671 -5.2340 1.7078 40 1 5.8408 -3.3520 3.2703 41 1 0.8106 1.8001 1.7922 42 1 1.7864 3.1876 1.1434 There are 73 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 73 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_9576490_17541816.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 11:31:10 Heat of formation + Delta-G solvation = -334.517006 kcal Electronic energy + Delta-G solvation = -42743.918661 eV Core-core repulsion = 36428.482187 eV Total energy + Delta-G solvation = -6315.436473 eV No. of doubly occupied orbitals = 73 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 419.064 amu Computer time = 1.41 seconds Orbital eigenvalues (eV) -51.26604 -50.69305 -50.41174 -48.80107 -48.73262 -42.32429 -41.48086 -39.67867 -38.57318 -37.63434 -37.49487 -37.31405 -33.16319 -31.88911 -31.28550 -28.42667 -27.88863 -27.39446 -26.82703 -25.04855 -23.75563 -23.72038 -21.91480 -20.73038 -20.02007 -19.88650 -19.61416 -19.58425 -19.49328 -19.19090 -18.95805 -18.41727 -18.00423 -17.37090 -17.26663 -17.20512 -16.78882 -16.76449 -16.47785 -16.07838 -15.90084 -15.82335 -15.67561 -15.61336 -15.50505 -15.38780 -15.27824 -15.15108 -14.92817 -14.88830 -14.77116 -14.45647 -14.38837 -14.35080 -14.11518 -13.72788 -13.58602 -13.50368 -13.39651 -13.28867 -13.19999 -13.13896 -12.95293 -12.56764 -12.37233 -12.23617 -12.17239 -11.95365 -11.49385 -10.98030 -10.83083 -10.24292 -10.04926 -5.13730 -1.39858 -0.62808 -0.59631 0.65639 1.11305 1.50905 1.57039 1.72475 1.89925 2.06724 2.16509 2.30548 2.52843 2.58215 2.62858 2.64381 2.81618 2.88568 3.06864 3.16270 3.24421 3.29050 3.37472 3.46972 3.50407 3.71413 3.86669 3.94790 4.18318 4.26227 4.29859 4.33381 4.35493 4.39917 4.40427 4.45029 4.51363 4.54259 4.63564 4.65632 4.72465 4.81599 4.85932 5.18753 5.71211 6.79813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.003 3.997 2 O -0.342 6.342 3 C 0.038 3.962 4 C 0.434 3.566 5 F -0.176 7.176 6 F -0.187 7.187 7 F -0.183 7.183 8 C -0.135 4.135 9 C -0.096 4.096 10 H 0.126 0.874 11 C -0.628 4.628 12 S 2.586 3.414 13 O -0.952 6.952 14 O -0.959 6.959 15 O -0.656 6.656 16 C 0.007 3.993 17 C 0.131 3.869 18 F -0.105 7.105 19 C -0.149 4.149 20 C -0.075 4.075 21 O -0.550 6.550 22 Si 0.779 3.221 23 C 0.147 3.853 24 F -0.113 7.113 25 C -0.135 4.135 26 C -0.036 4.036 27 C -0.128 4.128 28 H 0.045 0.955 29 H 0.116 0.884 30 H 0.070 0.930 31 H 0.136 0.864 32 H 0.097 0.903 33 H 0.154 0.846 34 H 0.174 0.826 35 H 0.107 0.893 36 H 0.409 0.591 37 H -0.282 1.282 38 H -0.290 1.290 39 H 0.192 0.808 40 H 0.184 0.816 41 H 0.114 0.886 42 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.767 -2.135 -0.321 6.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 O -0.260 6.260 3 C -0.005 4.005 4 C 0.379 3.621 5 F -0.158 7.158 6 F -0.168 7.168 7 F -0.164 7.164 8 C -0.172 4.172 9 C -0.115 4.115 10 H 0.144 0.856 11 C -0.757 4.757 12 S 2.685 3.315 13 O -0.951 6.951 14 O -0.957 6.957 15 O -0.615 6.615 16 C -0.035 4.035 17 C 0.109 3.891 18 F -0.083 7.083 19 C -0.151 4.151 20 C -0.184 4.184 21 O -0.361 6.361 22 Si 0.682 3.318 23 C 0.127 3.873 24 F -0.091 7.091 25 C -0.153 4.153 26 C -0.056 4.056 27 C -0.166 4.166 28 H 0.064 0.936 29 H 0.134 0.866 30 H 0.088 0.912 31 H 0.154 0.846 32 H 0.116 0.884 33 H 0.171 0.829 34 H 0.192 0.808 35 H 0.125 0.875 36 H 0.261 0.739 37 H -0.209 1.209 38 H -0.217 1.217 39 H 0.209 0.791 40 H 0.201 0.799 41 H 0.132 0.868 42 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -4.288 -2.877 0.723 5.214 hybrid contribution -0.703 0.958 -0.480 1.281 sum -4.991 -1.919 0.243 5.353 Atomic orbital electron populations 1.23323 0.78572 1.05522 1.01809 1.88065 1.22231 1.21908 1.93794 1.24047 0.99871 0.86690 0.89849 1.21455 0.74202 0.78677 0.87734 1.93173 1.70609 1.55316 1.96685 1.93193 1.94467 1.71772 1.57406 1.93183 1.35894 1.90435 1.96883 1.23608 0.91759 1.06866 0.94955 1.21808 1.00220 0.93979 0.95517 0.85640 1.30811 1.22102 1.08421 1.14385 1.05724 0.77804 0.73753 0.74197 1.93631 1.82453 1.65176 1.53793 1.93633 1.59798 1.79650 1.62632 1.85759 1.90354 1.33588 1.51801 1.18148 0.94265 0.93737 0.97396 1.17015 0.82834 0.91507 0.97753 1.91565 1.53479 1.72363 1.90874 1.19500 0.97586 0.96402 1.01653 1.24594 0.93626 1.13233 0.86899 1.86482 1.39732 1.95250 1.14637 0.94394 0.85227 0.73235 0.78933 1.17587 0.94049 0.85911 0.89799 1.91565 1.95986 1.54552 1.66973 1.21538 0.97362 0.99141 0.97268 1.21474 0.99001 0.91039 0.94047 1.23650 0.99373 1.01550 0.92060 0.93587 0.86561 0.91151 0.84623 0.88401 0.82851 0.80802 0.87541 0.73864 1.20868 1.21727 0.79053 0.79867 0.86817 0.85455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 -0.01 10.29 113.37 1.17 1.15 16 2 O -0.34 0.22 8.39 -148.98 -1.25 -1.03 16 3 C 0.04 -0.05 0.83 -10.27 -0.01 -0.06 16 4 C 0.43 0.83 2.53 71.98 0.18 1.02 16 5 F -0.18 -0.36 15.80 44.97 0.71 0.35 16 6 F -0.19 -1.15 17.12 44.97 0.77 -0.38 16 7 F -0.18 -0.34 15.31 44.97 0.69 0.35 16 8 C -0.13 0.25 6.90 31.12 0.21 0.47 16 9 C -0.10 0.41 3.84 -10.27 -0.04 0.37 16 10 H 0.13 -0.88 8.13 -2.38 -0.02 -0.90 16 11 C -0.63 1.89 4.23 71.98 0.30 2.19 16 12 S 2.59 9.60 5.16 -56.49 -0.29 9.31 16 13 O -0.95 -9.58 18.09 -118.57 -2.15 -11.73 16 14 O -0.96 -6.39 16.26 -118.57 -1.93 -8.32 16 15 O -0.66 -2.54 9.92 -62.72 -0.62 -3.16 16 16 C 0.01 0.02 4.80 22.52 0.11 0.13 16 17 C 0.13 0.20 6.28 22.45 0.14 0.34 16 18 F -0.10 0.13 13.66 44.97 0.61 0.75 16 19 C -0.15 -0.24 4.48 -19.79 -0.09 -0.33 16 20 C -0.07 0.24 2.70 71.23 0.19 0.44 16 21 O -0.55 1.86 12.16 -148.98 -1.81 0.05 16 22 Si 0.78 -2.92 31.59 68.60 2.17 -0.75 16 23 C 0.15 0.32 6.62 22.37 0.15 0.47 16 24 F -0.11 -0.50 14.50 44.97 0.65 0.15 16 25 C -0.13 0.22 10.02 22.31 0.22 0.44 16 26 C -0.04 0.01 9.04 22.35 0.20 0.21 16 27 C -0.13 0.80 6.52 31.12 0.20 1.00 16 28 H 0.05 -0.15 6.61 -2.38 -0.02 -0.16 16 29 H 0.12 -1.01 8.14 -2.39 -0.02 -1.03 16 30 H 0.07 -0.58 6.56 -2.38 -0.02 -0.60 16 31 H 0.14 -0.62 7.05 -2.38 -0.02 -0.63 16 32 H 0.10 0.02 8.10 -2.38 -0.02 0.00 16 33 H 0.15 -0.41 4.11 -2.39 -0.01 -0.42 16 34 H 0.17 -1.44 8.14 -2.39 -0.02 -1.46 16 35 H 0.11 -0.82 6.97 -2.38 -0.02 -0.84 16 36 H 0.41 -5.64 8.74 -74.06 -0.65 -6.29 16 37 H -0.28 -0.98 6.48 99.48 0.64 -0.34 16 38 H -0.29 -0.61 7.11 99.48 0.71 0.10 16 39 H 0.19 -1.49 8.06 -2.91 -0.02 -1.51 16 40 H 0.18 -0.80 8.06 -2.91 -0.02 -0.82 16 41 H 0.11 -1.05 6.63 -2.39 -0.02 -1.06 16 42 H 0.13 -1.10 8.01 -2.39 -0.02 -1.12 16 Total: 0.00 -24.64 373.93 0.97 -23.66 By element: Atomic # 1 Polarization: -17.56 SS G_CDS: 0.47 Total: -17.09 kcal Atomic # 6 Polarization: 4.89 SS G_CDS: 2.95 Total: 7.84 kcal Atomic # 8 Polarization: -16.43 SS G_CDS: -7.76 Total: -24.19 kcal Atomic # 9 Polarization: -2.21 SS G_CDS: 3.44 Total: 1.22 kcal Atomic # 14 Polarization: -2.92 SS G_CDS: 2.17 Total: -0.75 kcal Atomic # 16 Polarization: 9.60 SS G_CDS: -0.29 Total: 9.31 kcal Total: -24.64 0.97 -23.66 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_9576490_17541816.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -310.853 kcal (2) G-P(sol) polarization free energy of solvation -24.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -335.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.664 kcal (6) G-S(sol) free energy of system = (1) + (5) -334.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.41 seconds