Wall clock time and date at job start Mon Mar 8 2021 11:39:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42897 * 1 3 3 Si 1.86303 * 109.46847 * 2 1 4 4 C 1.50701 * 109.47113 * 240.00412 * 2 1 3 5 5 C 1.38438 * 119.99970 * 66.56664 * 4 2 1 6 6 F 1.35102 * 119.96409 * 359.97438 * 5 4 2 7 7 C 1.38455 * 120.07522 * 180.02562 * 5 4 2 8 8 C 1.38189 * 120.06880 * 359.97438 * 7 5 4 9 9 C 1.38633 * 119.99786 * 0.02562 * 8 7 5 10 10 O 1.35997 * 120.04065 * 180.02562 * 9 8 7 11 11 S 1.52198 * 114.00062 * 89.99696 * 10 9 8 12 12 O 1.42096 * 104.27859 * 318.92923 * 11 10 9 13 13 O 1.42104 * 104.27480 * 191.07121 * 11 10 9 14 14 C 1.81403 * 104.45062 * 75.00012 * 11 10 9 15 15 H 1.09002 * 112.84742 * 311.19480 * 14 11 10 16 16 C 1.53782 * 113.61155 * 82.50275 * 14 11 10 17 17 C 1.53779 * 87.08236 * 89.11848 * 16 14 11 18 18 H 1.09003 * 113.68472 * 270.87098 * 17 16 14 19 19 C 1.50693 * 113.61756 * 139.97842 * 17 16 14 20 20 C 1.38240 * 119.99962 * 142.49617 * 19 17 16 21 21 C 1.38242 * 119.99768 * 180.27695 * 20 19 17 22 22 C 1.38234 * 120.00116 * 359.49286 * 21 20 19 23 23 C 1.38239 * 119.99950 * 0.51189 * 22 21 20 24 24 C 1.38234 * 120.00142 * 322.52665 * 19 17 16 25 25 C 1.53778 * 113.61250 * 179.97438 * 14 11 10 26 26 C 1.38339 * 119.99556 * 246.83839 * 4 2 1 27 27 F 1.35105 * 120.03419 * 0.03044 * 26 4 2 28 28 H 0.96703 * 114.00278 * 60.00237 * 1 2 3 29 29 H 1.08995 * 109.47656 * 120.00099 * 2 1 3 30 30 H 1.48495 * 109.99970 * 54.87445 * 3 2 1 31 31 H 1.48502 * 109.99779 * 176.19045 * 3 2 1 32 32 H 1.07997 * 119.96823 * 179.97438 * 7 5 4 33 33 H 1.08005 * 120.00046 * 179.97438 * 8 7 5 34 34 H 1.08998 * 113.61770 * 334.56304 * 16 14 11 35 35 H 1.09002 * 113.61027 * 203.66637 * 16 14 11 36 36 H 1.07991 * 119.99864 * 0.02562 * 20 19 17 37 37 H 1.07996 * 119.99612 * 179.72947 * 21 20 19 38 38 H 1.07997 * 120.00486 * 180.22860 * 22 21 20 39 39 H 1.08000 * 120.00086 * 179.72000 * 23 22 21 40 40 H 1.08001 * 119.99983 * 359.97438 * 24 19 17 41 41 H 1.09002 * 113.61181 * 156.34043 * 25 14 11 42 42 H 1.09000 * 113.69482 * 25.43868 * 25 14 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0499 1.7565 0.0000 4 6 1.9313 -0.7103 -1.2305 5 6 1.7125 -0.1633 -2.4833 6 9 1.0481 1.0070 -2.6019 7 6 2.1729 -0.8149 -3.6149 8 6 2.8522 -2.0124 -3.4962 9 6 3.0730 -2.5628 -2.2431 10 8 3.7419 -3.7410 -2.1252 11 16 5.2489 -3.5853 -1.9795 12 8 5.5855 -2.5561 -2.8996 13 8 5.7543 -4.9039 -2.1383 14 6 5.4823 -3.0152 -0.2733 15 1 4.8306 -2.1812 -0.0129 16 6 5.4750 -4.1520 0.7624 17 6 6.9919 -4.2626 0.5355 18 1 7.2658 -4.9460 -0.2683 19 6 7.7756 -4.5024 1.8001 20 6 8.8749 -5.3404 1.7835 21 6 9.5904 -5.5650 2.9449 22 6 9.2128 -4.9433 4.1204 23 6 8.1134 -4.1054 4.1370 24 6 7.3948 -3.8851 2.9768 25 6 6.9556 -2.7876 0.1040 26 6 2.6061 -1.9118 -1.1085 27 9 2.8146 -2.4492 0.1134 28 1 -0.3934 0.4417 -0.7651 29 1 1.7924 -0.5138 0.8899 30 1 1.4622 2.5029 1.1413 31 1 3.5319 1.7713 0.0927 32 1 2.0009 -0.3868 -4.5914 33 1 3.2105 -2.5199 -4.3797 34 1 4.9198 -5.0329 0.4400 35 1 5.2064 -3.8255 1.7671 36 1 9.1723 -5.8228 0.8642 37 1 10.4466 -6.2231 2.9328 38 1 9.7739 -5.1158 5.0269 39 1 7.8158 -3.6233 5.0564 40 1 6.5359 -3.2304 2.9898 41 1 7.0920 -2.0880 0.9287 42 1 7.5971 -2.5667 -0.7491 There are 66 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 66 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_9576490_17781816.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 11:39:34 Heat of formation + Delta-G solvation = -118.274658 kcal Electronic energy + Delta-G solvation = -34104.098286 eV Core-core repulsion = 29167.715961 eV Total energy + Delta-G solvation = -4936.382326 eV No. of doubly occupied orbitals = 66 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 383.077 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -50.70293 -50.46460 -42.31800 -41.21233 -39.73522 -39.03110 -38.51037 -37.76126 -37.51113 -33.01221 -32.31785 -31.83410 -31.25646 -27.54710 -27.14799 -27.01367 -24.97938 -23.94941 -23.81249 -23.10370 -21.79412 -21.02840 -19.87714 -19.60863 -19.27634 -19.24438 -18.29253 -18.07970 -17.86986 -17.47544 -17.17927 -16.83526 -16.61680 -16.47327 -16.38220 -16.06607 -15.79725 -15.60874 -15.44634 -15.28213 -14.92834 -14.56380 -14.47495 -14.34285 -14.26986 -14.11505 -13.84272 -13.71484 -13.58940 -13.55489 -13.45960 -13.32615 -13.29005 -13.07960 -12.58775 -12.55787 -12.20410 -12.04015 -11.93466 -11.57950 -11.46634 -10.95901 -10.24313 -10.14470 -9.88203 -9.66350 -5.03851 -1.39900 -0.57264 -0.56161 0.34140 0.43723 0.64122 1.04731 1.50592 1.73922 1.83620 2.19862 2.30038 2.50490 2.68117 2.72430 2.85625 2.92278 3.04568 3.29498 3.40132 3.47570 3.51342 3.59426 3.62035 3.91584 3.93076 4.01938 4.09269 4.22746 4.26454 4.31206 4.36368 4.37515 4.44658 4.45843 4.55004 4.56294 4.60161 4.65633 4.71714 4.75753 5.00909 5.06030 5.11770 5.26847 5.51762 5.58427 5.63872 6.05438 6.47524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.542 6.542 2 C -0.076 4.076 3 Si 0.754 3.246 4 C -0.179 4.179 5 C 0.158 3.842 6 F -0.088 7.088 7 C -0.116 4.116 8 C -0.039 4.039 9 C 0.002 3.998 10 O -0.656 6.656 11 S 2.603 3.397 12 O -0.959 6.959 13 O -0.945 6.945 14 C -0.650 4.650 15 H 0.160 0.840 16 C -0.086 4.086 17 C -0.098 4.098 18 H 0.109 0.891 19 C -0.079 4.079 20 C -0.130 4.130 21 C -0.128 4.128 22 C -0.133 4.133 23 C -0.127 4.127 24 C -0.125 4.125 25 C -0.085 4.085 26 C 0.121 3.879 27 F -0.115 7.115 28 H 0.395 0.605 29 H 0.120 0.880 30 H -0.275 1.275 31 H -0.274 1.274 32 H 0.206 0.794 33 H 0.181 0.819 34 H 0.084 0.916 35 H 0.122 0.878 36 H 0.130 0.870 37 H 0.136 0.864 38 H 0.136 0.864 39 H 0.138 0.862 40 H 0.137 0.863 41 H 0.124 0.876 42 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.924 5.079 -1.658 5.679 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.351 6.351 2 C -0.184 4.184 3 Si 0.656 3.344 4 C -0.181 4.181 5 C 0.137 3.863 6 F -0.066 7.066 7 C -0.134 4.134 8 C -0.059 4.059 9 C -0.040 4.040 10 O -0.615 6.615 11 S 2.700 3.300 12 O -0.958 6.958 13 O -0.943 6.943 14 C -0.759 4.759 15 H 0.178 0.822 16 C -0.124 4.124 17 C -0.116 4.116 18 H 0.128 0.872 19 C -0.079 4.079 20 C -0.148 4.148 21 C -0.145 4.145 22 C -0.151 4.151 23 C -0.145 4.145 24 C -0.143 4.143 25 C -0.123 4.123 26 C 0.099 3.901 27 F -0.093 7.093 28 H 0.245 0.755 29 H 0.138 0.862 30 H -0.201 1.201 31 H -0.200 1.200 32 H 0.223 0.777 33 H 0.199 0.801 34 H 0.102 0.898 35 H 0.140 0.860 36 H 0.148 0.852 37 H 0.154 0.846 38 H 0.154 0.846 39 H 0.156 0.844 40 H 0.155 0.845 41 H 0.142 0.858 42 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -1.359 4.958 -1.290 5.301 hybrid contribution 0.083 -0.867 1.243 1.518 sum -1.276 4.091 -0.047 4.286 Atomic orbital electron populations 1.86563 1.16065 1.81932 1.50496 1.25135 0.86060 1.11371 0.95881 0.93870 0.78289 0.74612 0.87675 1.20345 1.04273 0.95877 0.97632 1.17252 0.93623 0.83164 0.92270 1.91427 1.76797 1.42947 1.95403 1.21590 0.97301 0.93885 1.00612 1.21551 0.93687 0.94815 0.95870 1.18366 1.05945 0.84878 0.94859 1.85765 1.44392 1.40008 1.91290 1.05263 0.72896 0.74358 0.77474 1.93621 1.81813 1.60531 1.59792 1.93618 1.76449 1.38089 1.86154 1.32465 1.09676 1.12398 1.21398 0.82186 1.22749 0.95854 0.94732 0.99092 1.21943 0.95074 0.97805 0.96815 0.87246 1.19622 0.96063 0.97818 0.94399 1.21352 0.95648 0.98658 0.99177 1.21441 1.00319 0.99949 0.92832 1.21491 0.97529 0.97243 0.98802 1.21447 0.95622 0.98600 0.98816 1.21228 1.00565 1.00277 0.92201 1.22764 0.88564 0.97285 1.03721 1.17265 1.00723 0.92601 0.79481 1.91542 1.92225 1.85219 1.40319 0.75477 0.86216 1.20129 1.19978 0.77738 0.80139 0.89768 0.86013 0.85247 0.84623 0.84591 0.84433 0.84534 0.85820 0.89221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 0.62 12.88 -148.98 -1.92 -1.29 16 2 C -0.08 0.15 2.78 71.24 0.20 0.35 16 3 Si 0.75 -2.37 30.28 68.60 2.08 -0.30 16 4 C -0.18 0.45 4.65 -19.79 -0.09 0.36 16 5 C 0.16 -1.09 6.52 22.37 0.15 -0.95 16 6 F -0.09 0.89 13.52 44.97 0.61 1.50 16 7 C -0.12 1.03 10.02 22.31 0.22 1.26 16 8 C -0.04 0.15 9.04 22.35 0.20 0.35 16 9 C 0.00 0.00 4.80 22.52 0.11 0.11 16 10 O -0.66 -3.06 9.92 -62.61 -0.62 -3.68 16 11 S 2.60 13.81 5.00 -56.49 -0.28 13.53 16 12 O -0.96 -6.96 16.26 -118.57 -1.93 -8.89 16 13 O -0.94 -10.49 16.42 -118.57 -1.95 -12.44 16 14 C -0.65 -0.04 3.56 31.12 0.11 0.07 16 15 H 0.16 -0.46 5.41 -2.39 -0.01 -0.47 16 16 C -0.09 -0.01 6.87 31.12 0.21 0.20 16 17 C -0.10 -0.16 3.59 -11.04 -0.04 -0.20 16 18 H 0.11 0.37 6.97 -2.39 -0.02 0.35 16 19 C -0.08 -0.21 5.29 -19.87 -0.11 -0.32 16 20 C -0.13 -0.44 9.71 22.27 0.22 -0.23 16 21 C -0.13 -0.30 10.05 22.27 0.22 -0.07 16 22 C -0.13 -0.21 10.05 22.27 0.22 0.02 16 23 C -0.13 -0.13 10.05 22.27 0.22 0.09 16 24 C -0.12 -0.13 8.61 22.27 0.19 0.06 16 25 C -0.09 0.09 7.15 31.10 0.22 0.31 16 26 C 0.12 0.07 6.34 22.45 0.14 0.21 16 27 F -0.11 -0.15 13.41 44.97 0.60 0.45 16 28 H 0.39 -3.50 7.59 -74.06 -0.56 -4.06 16 29 H 0.12 -0.12 6.98 -2.39 -0.02 -0.14 16 30 H -0.28 -0.82 7.11 99.48 0.71 -0.11 16 31 H -0.27 -0.34 7.11 99.48 0.71 0.37 16 32 H 0.21 -3.36 8.06 -2.91 -0.02 -3.39 16 33 H 0.18 -1.31 8.06 -2.91 -0.02 -1.33 16 34 H 0.08 0.07 8.09 -2.39 -0.02 0.05 16 35 H 0.12 -0.37 6.31 -2.39 -0.02 -0.39 16 36 H 0.13 0.17 8.05 -2.92 -0.02 0.14 16 37 H 0.14 -0.15 8.06 -2.91 -0.02 -0.17 16 38 H 0.14 -0.28 8.06 -2.91 -0.02 -0.30 16 39 H 0.14 -0.38 8.06 -2.91 -0.02 -0.40 16 40 H 0.14 -0.39 6.66 -2.91 -0.02 -0.41 16 41 H 0.12 -0.49 7.72 -2.39 -0.02 -0.51 16 42 H 0.09 -0.20 8.10 -2.39 -0.02 -0.22 16 Total: 0.00 -20.07 363.16 -0.43 -20.50 By element: Atomic # 1 Polarization: -11.57 SS G_CDS: 0.57 Total: -11.00 kcal Atomic # 6 Polarization: -0.79 SS G_CDS: 2.41 Total: 1.62 kcal Atomic # 8 Polarization: -19.88 SS G_CDS: -6.42 Total: -26.30 kcal Atomic # 9 Polarization: 0.74 SS G_CDS: 1.21 Total: 1.95 kcal Atomic # 14 Polarization: -2.37 SS G_CDS: 2.08 Total: -0.30 kcal Atomic # 16 Polarization: 13.81 SS G_CDS: -0.28 Total: 13.53 kcal Total: -20.07 -0.43 -20.50 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_9576490_17781816.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.779 kcal (2) G-P(sol) polarization free energy of solvation -20.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.495 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds